Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000369.1

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

90473 .. 93362

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000369.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggagcctgagagaaagctaacggcggcggctgtggcggcgttccaagaaggggtcgggctagttctgtcgcggtggtcggcgcttcaattggccgttgagaacgagtggggtggccgtgactcgcgcctcaaggccgagcaactcctctccgatatcgtctcctgggtcaatcactccaccgctgaaaaaataatgattatgcatgaagaatgtttggattgcaatttcaagtctattgaaagcctaagggaagccaatagtcgaagagttccaactcttcatgttaaacaggttgtggatgacgatgaagacagtgatgatgatgatgatgatactgatcctagcatgaataaagatgagtcatcaaacatgaatgtggacaaaccagagtctcatgcagtagcgccaaagaccaggcaggcagttgaagcagaagatggttgggaggtagtcggaccaagaagaagtaggggtaaaaggaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

162

Amino Acids

18.17

Weight (kDa)

4.71

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	73, 127
AciI	CCGC	5 cut(s)	26, 29, 38, 73, 183
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	2 cut(s)	93, 115
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	4 cut(s)	89, 232, 242, 431
AjnI	CCWGG	2 cut(s)	164, 416
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	166, 399
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	3 cut(s)	93, 115, 135
AspLEI	GCGC	3 cut(s)	85, 129, 409
AspS9I	GGNCC	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	458
AxyI	CCTNAGG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	318
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	3 cut(s)	39, 80, 102
BciT130I	CCWGG	2 cut(s)	166, 418
BcoDI	GTCTC	2 cut(s)	166, 399
BfaI	CTAG	2 cut(s)	62, 345
BfoI	RGCGCY	2 cut(s)	86, 410
BisI	GCNGC	3 cut(s)	27, 30, 39
BlsI	GCNGC	3 cut(s)	28, 31, 40
Bme1390I	CCNGG	2 cut(s)	166, 418
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	166, 418
BpiI	GAAGAC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	166, 418
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	73, 127
BshFI	GGCC	3 cut(s)	95, 117, 137
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	166, 399
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	95, 117, 137
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	5 cut(s)	26, 29, 38, 73, 183
BspANI	GGCC	3 cut(s)	95, 117, 137
BspFNI	CGCG	2 cut(s)	73, 127
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	166, 418
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	262, 285
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	9, 248
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	2 cut(s)	73, 127
BstH2I	RGCGCY	2 cut(s)	86, 410
BstHHI	GCGC	3 cut(s)	85, 129, 409
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	166, 399
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 38, 431
BstNI	CCWGG	2 cut(s)	166, 418
BstSCI	CCNGG	2 cut(s)	164, 416
BstUI	CGCG	2 cut(s)	73, 127
BstV2I	GAAGAC	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	95, 117, 137
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	3 cut(s)	85, 129, 409
Cfr13I	GGNCC	1 cut(s)	458
CviAII	CATG	5 cut(s)	206, 284, 349, 373, 398
CviJI	RGCY	9 cut(s)	7, 19, 32, 61, 95, 117, 137, 246, 257
CviKI_1	RGCY	9 cut(s)	7, 19, 32, 61, 95, 117, 137, 246, 257
DdeI	CTNAG	2 cut(s)	9, 248
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
EaeI	YGGCCR	2 cut(s)	93, 115
Eam1104I	CTCTTC	2 cut(s)	262, 285
EarI	CTCTTC	2 cut(s)	262, 285
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	164, 416
EcoRV	GATATC	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	5 cut(s)	209, 287, 352, 376, 401
FaiI	YATR	6 cut(s)	203, 207, 285, 350, 374, 399
FatI	CATG	5 cut(s)	205, 283, 348, 372, 397
Fnu4HI	GCNGC	3 cut(s)	27, 30, 39
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	27, 30, 39
FspBI	CTAG	2 cut(s)	62, 345
GlaI	GCGC	3 cut(s)	84, 128, 408
GluI	GCNGC	3 cut(s)	27, 30, 39
HaeII	RGCGCY	2 cut(s)	86, 410
HaeIII	GGCC	3 cut(s)	95, 117, 137
HhaI	GCGC	3 cut(s)	85, 129, 409
Hin1II	CATG	5 cut(s)	209, 287, 352, 376, 401
Hin6I	GCGC	3 cut(s)	83, 127, 407
HinP1I	GCGC	3 cut(s)	83, 127, 407
HinfI	GANTC	3 cut(s)	122, 362, 392
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	154, 458
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	3 cut(s)	205, 225, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 38, 431
HpyF3I	CTNAG	2 cut(s)	9, 248
Hsp92II	CATG	5 cut(s)	209, 287, 352, 376, 401
HspAI	GCGC	3 cut(s)	83, 127, 407
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	21, 151, 178, 278, 402, 403, 407, 430
MaeI	CTAG	2 cut(s)	62, 345
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	6 cut(s)	221, 272, 279, 323, 449, 477
MfeI	CAATTG	1 cut(s)	89
MluCI	AATT	3 cut(s)	89, 226, 484
MlyI	GAGTC	3 cut(s)	116, 371, 401
MmeI	TCCRAC	2 cut(s)	299, 436
MnlI	CCTC	3 cut(s)	140, 158, 442
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	166, 418
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	166, 418
MvnI	CGCG	2 cut(s)	73, 127
MwoI	GCNNNNNNNGC	3 cut(s)	35, 38, 431
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	5 cut(s)	209, 287, 352, 376, 401
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	28, 31, 40
PleI	GAGTC	3 cut(s)	116, 370, 400
PpsI	GAGTC	3 cut(s)	116, 370, 400
Psp6I	CCWGG	2 cut(s)	164, 416
PspGI	CCWGG	2 cut(s)	164, 416
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	27, 30, 39
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	3 cut(s)	116, 371, 401
ScrFI	CCNGG	2 cut(s)	166, 418
SetI	ASST	3 cut(s)	21, 297, 453
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	89, 226, 484
SsiI	CCGC	5 cut(s)	26, 29, 38, 73, 183
SspMI	CTAG	2 cut(s)	62, 345
StyD4I	CCNGG	2 cut(s)	164, 416
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	265
TasI	AATT	3 cut(s)	89, 226, 484
TauI	GCSGC	3 cut(s)	29, 32, 41
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	5 cut(s)	222, 272, 324, 365, 389
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	458
XspI	CTAG	2 cut(s)	62, 345
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.