Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006632

Physical Location & Seq

Genomic Coordinates Reverse (-)

13349315 .. 13352171

Gene Structure 2857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1096000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTGGGCTCTCCGCCGTGCTTCTTTTCCTCTCAGGAACCAAGCATTCAACATAGGAACTTCTCGTGTATGTTGTGCTAATTTGGAGCTACCAATGACTGACAGACACGAGGATGTTTGTTTCTTTGAGTCCTGTAAATCATTGTCTGATGAATGTCTGCCTTCCAAGAGACTATACCACACAACATGTGTTTCTTGGAACTTCTCCATGGATAAACACAGCCTTTCTTCACAAGCTGGTGCAAAAAGCAATGGCGAGGAAGATGACTTGGAAGATGGGTTCTCTGAACTTGAAACACCATCTAGTGTTGAAGCAATTCCAGAGATCAATGGAAATGATGAAAATATAGATGAATTAATTTCTGAACCAGAACTCTCTGAAGTTGATGAAGAAGTTGAGGTTTCCCAACATGAGCTAGAGTTGTCAGAGACTGAGACTGATCCAAGTGATAAAATATCGCGAAAGAAAAGAAACCCTTTAGCACTTTACAAGGCCATCTTAGCTTTCCCGGGTTTCTCTGTTCATGGTGCTCTTGATAAGTGGGTAGAAGAAGGAAATGAAATAAACCGGACACAGATATCGATGGCCCTGCTCAATTTTCGCAGGCGTCAAATGTTTGGGAGGGCATTACAGCTTTCAGAGTGGTTGGAGGAGCATAAGAAGATTGAATTTAATGAAAGAGACTATGCAACTCGTCTCGGCTTAATCGCCAAAGTACGTGGCCTCCAAAGGGCAGAAAACTATCTCGAGAAGATTCCAAAATCCTTTAGAGGTGAGGTAATGTACCAAACCCTGTTGGCATACTGTGTCTCTACCAGCAATATGAAGAAAGCCGAAGAAGTTTTCAACAAAATGAAGGACCTAGAATTCTCGGTCACAGCATTTACTTGCAACCACTGTATTACTGTTAATGGAGAAAGAAGATGTCAAGCCAACTGCCTTCACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

317

Amino Acids

36.18

Weight (kDa)

5.11

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	259 - 301	7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15480 AT1G80270 AT1G80270 AT1G80270 AT1G80270 AT1G80270
fragaria_vesca	FvH4_6g25350
malus_domestica	MD12G1096000.v1.1 MD14G1090300.v1.1
prunus_persica	Prupe.7G034000_v2.0.a1 Prupe.7G034000_v2.0.a1
pyrus_communis	pycom12g08300 pycom14g08090
rosa_chinensis	RchiOBHm_Chr2g0125771
rosa_laevigata	RLG00000018879
rosa_multiflora	Rmu_sc0005557.1_g000002 Rmu_sc0026259.1_g000001 Rmu_sc0026260.1_g000001 Rmu_ssc0000055.1_g000010
rosa_roxburghii	Rroxscaffold_2G00117730
rosa_rugosa	Rorug02G0259300
rosa_samantha	Rh2AG317300 Rh2BG325300 Rh2CG307100 Rh2DG343300
rosa_wichuraiana	Rw2G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	460
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	668, 866
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	607
AfaI	GTAC	2 cut(s)	717, 785
AfiI	CCNNNNNNNGG	1 cut(s)	730
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	49, 293, 311, 668, 847
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	5 cut(s)	88, 236, 415, 503, 634
AluI	AGCT	5 cut(s)	88, 236, 415, 503, 634
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	6 cut(s)	163, 422, 428, 675, 701, 814
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	2 cut(s)	508, 746
AoxI	GGCC	3 cut(s)	492, 585, 721
ApoI	RAATTY	2 cut(s)	668, 866
AseI	ATTAAT	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	586, 859
AsuC2I	CCSGG	2 cut(s)	509, 510
AsuHPI	GGTGA	1 cut(s)	785
AvaI	CYCGRG	2 cut(s)	508, 746
AvaII	GGWCC	1 cut(s)	859
BanII	GRGCYC	1 cut(s)	10
BauI	CACGAG	2 cut(s)	63, 107
Bbv12I	GWGCWC	1 cut(s)	532
BccI	CCATC	4 cut(s)	269, 307, 503, 577
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BcnI	CCSGG	2 cut(s)	509, 510
BcoDI	GTCTC	6 cut(s)	163, 422, 428, 675, 701, 814
BfaI	CTAG	3 cut(s)	303, 416, 863
Bme1390I	CCNGG	2 cut(s)	509, 510
Bme18I	GGWCC	1 cut(s)	859
BmeT110I	CYCGRG	2 cut(s)	508, 746
BmgT120I	GGNCC	2 cut(s)	586, 859
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	509, 510
BpuMI	CCSGG	2 cut(s)	509, 510
Bsa29I	ATCGAT	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	607
BsaJI	CCNNGG	2 cut(s)	207, 508
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse3DI	GCAATG	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	207, 508
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	46, 423
BseRI	GAGGAG	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	3 cut(s)	494, 587, 723
BshVI	ATCGAT	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	2 cut(s)	508, 746
BsiSI	CCGG	2 cut(s)	509, 568
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	6 cut(s)	163, 422, 428, 675, 701, 814
BsmBI	CGTCTC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	3 cut(s)	494, 587, 723
BsoBI	CYCGRG	2 cut(s)	508, 746
Bsp1286I	GDGCHC	2 cut(s)	10, 532
Bsp143I	GATC	2 cut(s)	324, 439
Bsp19I	CCATGG	1 cut(s)	207
Bsp68I	TCGCGA	1 cut(s)	460
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	3 cut(s)	494, 587, 723
BspCNI	CTCAG	2 cut(s)	45, 424
BspDI	ATCGAT	1 cut(s)	581
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	207, 508
BssMI	GATC	2 cut(s)	324, 439
BssNI	GRCGYC	1 cut(s)	607
BssSI	CACGAG	2 cut(s)	63, 107
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	2 cut(s)	63, 107
Bst4CI	ACNGT	3 cut(s)	806, 899, 907
BstACI	GRCGYC	1 cut(s)	607
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	3 cut(s)	32, 432, 499
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	460
BstKTI	GATC	2 cut(s)	327, 442
BstMAI	GTCTC	6 cut(s)	163, 422, 428, 675, 701, 814
BstMBI	GATC	2 cut(s)	324, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	507, 508
BstUI	CGCG	1 cut(s)	460
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	494, 587, 723
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	895
BtuMI	TCGCGA	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	605
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	586, 859
Cfr9I	CCCGGG	1 cut(s)	508
ClaI	ATCGAT	1 cut(s)	581
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	716, 784
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	4 cut(s)	186, 208, 410, 524
CviQI	GTAC	2 cut(s)	716, 784
DdeI	CTNAG	3 cut(s)	32, 432, 499
DpnI	GATC	2 cut(s)	326, 441
DpnII	GATC	2 cut(s)	324, 439
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	2 cut(s)	508, 746
EcoO109I	RGGNCCY	1 cut(s)	859
EcoRI	GAATTC	1 cut(s)	866
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	701
FaeI	CATG	4 cut(s)	189, 211, 413, 527
FalI	AAGNNNNNCTT	4 cut(s)	460, 492, 482, 514
FatI	CATG	4 cut(s)	185, 207, 409, 523
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	10
FspBI	CTAG	3 cut(s)	303, 416, 863
HaeIII	GGCC	3 cut(s)	494, 587, 723
HapII	CCGG	2 cut(s)	509, 568
HgaI	GACGC	1 cut(s)	596
Hin1I	GRCGYC	1 cut(s)	607
Hin1II	CATG	4 cut(s)	189, 211, 413, 527
HinfI	GANTC	2 cut(s)	128, 754
HpaII	CCGG	2 cut(s)	509, 568
HphI	GGTGA	1 cut(s)	785
Hpy188I	TCNGA	6 cut(s)	148, 286, 364, 379, 427, 640
Hpy188III	TCNNGA	6 cut(s)	34, 320, 459, 533, 746, 748
HpyAV	CCTTC	4 cut(s)	171, 545, 850, 950
HpyCH4III	ACNGT	3 cut(s)	806, 899, 907
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	3 cut(s)	242, 689, 891
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	32, 432, 499
HpySE526I	ACGT	1 cut(s)	718
Hsp92I	GRCGYC	1 cut(s)	607
Hsp92II	CATG	4 cut(s)	189, 211, 413, 527
Kzo9I	GATC	2 cut(s)	324, 439
LmnI	GCTCC	2 cut(s)	85, 652
MaeI	CTAG	3 cut(s)	303, 416, 863
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	2 cut(s)	326, 441
MboI	GATC	2 cut(s)	324, 439
MhlI	GDGCHC	2 cut(s)	10, 532
MluCI	AATT	7 cut(s)	79, 315, 353, 357, 595, 668, 866
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	9 cut(s)	39, 103, 250, 391, 615, 643, 734, 764, 769
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	4 cut(s)	356, 672, 704, 909
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	2 cut(s)	509, 568
MspR9I	CCNGG	2 cut(s)	509, 510
Mva1269I	GAATGC	1 cut(s)	44
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	2 cut(s)	509, 510
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	324, 439
NlaIII	CATG	4 cut(s)	189, 211, 413, 527
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	678
NmuCI	GTSAC	1 cut(s)	874
NruI	TCGCGA	1 cut(s)	460
NspI	RCATGY	1 cut(s)	189
PaeR7I	CTCGAG	1 cut(s)	746
PciI	ACATGT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	754
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	859
PscI	ACATGT	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	859
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	586, 859
PspPPI	RGGWCCY	1 cut(s)	859
PstNI	CAGNNNCTG	1 cut(s)	431
RruI	TCGCGA	1 cut(s)	460
RsaI	GTAC	2 cut(s)	717, 785
RsaNI	GTAC	2 cut(s)	716, 784
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	356, 672, 704, 909
Sau3AI	GATC	2 cut(s)	324, 439
Sau96I	GGNCC	2 cut(s)	586, 859
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	509, 510
SduI	GDGCHC	2 cut(s)	10, 532
Sfr274I	CTCGAG	1 cut(s)	746
SinI	GGWCC	1 cut(s)	859
SlaI	CTCGAG	1 cut(s)	746
SmaI	CCCGGG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	7 cut(s)	79, 315, 353, 357, 595, 668, 866
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	3 cut(s)	303, 416, 863
StyD4I	CCNGG	2 cut(s)	507, 508
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	806, 899, 907
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	2 cut(s)	581, 747
TaqII	GACCGA	1 cut(s)	862
TasI	AATT	7 cut(s)	79, 315, 353, 357, 595, 668, 866
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	4 cut(s)	356, 672, 704, 909
Tru9I	TTAA	4 cut(s)	356, 672, 704, 909
TscAI	CASTG	1 cut(s)	902
TseFI	GTSAC	1 cut(s)	874
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	9 cut(s)	165, 354, 366, 402, 512, 573, 690, 839, 869
TspMI	CCCGGG	1 cut(s)	508
TspRI	CASTG	1 cut(s)	902
VpaK11BI	GGWCC	1 cut(s)	859
VspI	ATTAAT	1 cut(s)	356
XapI	RAATTY	2 cut(s)	668, 866
XceI	RCATGY	1 cut(s)	189
XhoI	CTCGAG	1 cut(s)	746
XmaI	CCCGGG	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	3 cut(s)	303, 416, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.