Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026259.1

Orthogroup ID

OG0006632

Physical Location & Seq

Genomic Coordinates Reverse (-)

339 .. 1469

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026259.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgatcccacagtcctttagaggtgaggtaatctaccgaaccctgttggctaattgcgttgctgccaacaatttgaagaaagccgaggacattttcaacaaaatgaaggatctagaattcccagttacctcatttacgtgcaaccagttgctccttctttacaaaaggcttgacaagaaaaaaatagcagatgtcttgctttttatggagaaagaaaatgtgaagccgactgccttcacttataaactattaatagataccaaaggccaatccaatgacatagctggaatggaacaagtttacgaaacaatgaaaactgaaggcattgaaccagacattactgtaaaagctatcatggctaagcattatgcctctggtggactgaaagaaaaagctgaggttcttttgaaggagatggaaggcggtaacttaaaggagaaccgctgggcttgccgaactttgcttcccctttatgcagaactgggtcaggttgatgaagtggggagagtttggaaggtttgtgtgtcaaatcctcgggttgaagaatgcttggctgcaattgaagcttggggaaagttgaataaaattgaagaagcagaggcggtttttgataagatgttgaaaacatggaagagactttcttccaggcagtatgctgtgcttttgaaggtgtatacgaaccacaagatgcttgcgaaaggcaaagatcttgttaagcatatggcagatagcaattgcgagattggcccattaatttgggatgcacttgtaaaactctatgtggaaactggagaggttgaaaaggctgattctattttgcagaaggctgctgggaagaaccagaagaagccaatgtttagttcttatatggctattatggatcaatattcaaggaggggtgatatccataactcagaaaagatattttataggatgagacaggtcggttacacagctcgacttcgtcagttccaatctcttgtccaggcctatataaatgccaaggctccagcctatggaatctgggagagaatgaagtcagataatatctttcccagcaaagctctgcttgggcagctgacacaagtcgatccatttaagaagacagcagtgtctgatttgcttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

376

Amino Acids

42.89

Weight (kDa)

9.12

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15480 AT1G80270 AT1G80270 AT1G80270 AT1G80270 AT1G80270
fragaria_vesca	FvH4_6g25350
malus_domestica	MD12G1096000.v1.1 MD14G1090300.v1.1
prunus_persica	Prupe.7G034000_v2.0.a1 Prupe.7G034000_v2.0.a1
pyrus_communis	pycom12g08300 pycom14g08090
rosa_chinensis	RchiOBHm_Chr2g0125771
rosa_laevigata	RLG00000018879
rosa_multiflora	Rmu_sc0005557.1_g000002 Rmu_sc0026259.1_g000001 Rmu_sc0026260.1_g000001 Rmu_ssc0000055.1_g000010
rosa_roxburghii	Rroxscaffold_2G00117730
rosa_rugosa	Rorug02G0259300
rosa_samantha	Rh2AG317300 Rh2BG325300 Rh2CG307100 Rh2DG343300
rosa_wichuraiana	Rw2G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AasI	GACNNNNNNGTC	1 cut(s)	1111
AccB7I	CCANNNNNTGG	1 cut(s)	1016
AccI	GTMKAC	1 cut(s)	674
AciI	CCGC	3 cut(s)	423, 442, 602
AclWI	GGATC	3 cut(s)	117, 888, 1085
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	1016
AjnI	CCWGG	2 cut(s)	644, 984
AjuI	GAANNNNNNNTTGG	2 cut(s)	844, 876
AloI	GAACNNNNNNTCC	2 cut(s)	448, 480
AluBI	AGCT	7 cut(s)	284, 350, 395, 566, 956, 1064, 1078
AluI	AGCT	7 cut(s)	284, 350, 395, 566, 956, 1064, 1078
Alw26I	GTCTC	2 cut(s)	628, 931
AlwI	GGATC	3 cut(s)	117, 888, 1085
AlwNI	CAGNNNCTG	1 cut(s)	1115
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	3 cut(s)	265, 745, 987
ApeKI	GCWGC	4 cut(s)	62, 554, 827, 1075
ApoI	RAATTY	1 cut(s)	116
AseI	ATTAAT	2 cut(s)	251, 752
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	35, 911
AvaI	CYCGRG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	1109
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	49, 541, 814, 1087
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	2 cut(s)	646, 986
BcoDI	GTCTC	2 cut(s)	628, 931
BfaI	CTAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	4 cut(s)	63, 555, 828, 1076
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	4 cut(s)	64, 556, 829, 1077
Bme1390I	CCNGG	2 cut(s)	646, 986
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	1008
BmrFI	CCNGG	2 cut(s)	646, 986
BmrI	ACTGGG	2 cut(s)	116, 491
BmsI	GCATC	2 cut(s)	678, 751
BmuI	ACTGGG	2 cut(s)	116, 491
BoxI	GACNNNNGTC	1 cut(s)	1085
BpiI	GAAGAC	1 cut(s)	1109
BpmI	CTGGAG	2 cut(s)	810, 993
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	84, 533, 1002
Bsc4I	CCNNNNNNNGG	1 cut(s)	1016
Bse1I	ACTGG	4 cut(s)	122, 145, 486, 793
BseBI	CCWGG	2 cut(s)	646, 986
BseDI	CCNNGG	3 cut(s)	84, 533, 1002
BseGI	GGATG	2 cut(s)	766, 939
BseLI	CCNNNNNNNGG	1 cut(s)	1016
BseMII	CTCAG	2 cut(s)	387, 927
BseNI	ACTGG	4 cut(s)	122, 145, 486, 793
BseXI	GCAGC	4 cut(s)	49, 541, 814, 1087
BseYI	CCCAGC	3 cut(s)	444, 830, 1055
BshFI	GGCC	3 cut(s)	267, 747, 989
BsiHKCI	CYCGRG	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	1016
BsmAI	GTCTC	2 cut(s)	628, 931
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	3 cut(s)	267, 747, 989
BsoBI	CYCGRG	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	3, 109, 706, 880, 1090
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	3 cut(s)	423, 442, 602
BspANI	GGCC	3 cut(s)	267, 747, 989
BspCNI	CTCAG	2 cut(s)	388, 926
BspLI	GGNNCC	1 cut(s)	1008
BspPI	GGATC	3 cut(s)	117, 888, 1085
BsrI	ACTGG	4 cut(s)	122, 145, 486, 793
BssECI	CCNNGG	3 cut(s)	84, 533, 1002
BssMI	GATC	5 cut(s)	3, 109, 706, 880, 1090
BssNAI	GTATAC	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	1002
Bst1107I	GTATAC	1 cut(s)	675
Bst2UI	CCWGG	2 cut(s)	646, 986
Bst4CI	ACNGT	2 cut(s)	12, 343
Bst6I	CTCTTC	1 cut(s)	626
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	451, 693
BstDEI	CTNAG	3 cut(s)	360, 396, 913
BstF5I	GGATG	2 cut(s)	766, 939
BstKTI	GATC	5 cut(s)	6, 112, 709, 883, 1093
BstMAI	GTCTC	2 cut(s)	628, 931
BstMBI	GATC	5 cut(s)	3, 109, 706, 880, 1090
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 450, 563, 744, 1075
BstNI	CCWGG	2 cut(s)	646, 986
BstPAI	GACNNNNGTC	1 cut(s)	1085
BstSCI	CCNGG	2 cut(s)	644, 984
BstV1I	GCAGC	4 cut(s)	49, 541, 814, 1087
BstV2I	GAAGAC	1 cut(s)	1109
BstX2I	RGATCY	2 cut(s)	109, 706
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstYI	RGATCY	2 cut(s)	109, 706
BstZ17I	GTATAC	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	267, 747, 989
BtsCI	GGATG	2 cut(s)	766, 939
BtsI	GCAGTG	1 cut(s)	1116
BtsIMutI	CAGTG	1 cut(s)	1116
Cac8I	GCNNGC	2 cut(s)	451, 693
CaiI	CAGNNNCTG	1 cut(s)	1115
Cfr13I	GGNCC	1 cut(s)	746
CviAII	CATG	2 cut(s)	355, 627
DdeI	CTNAG	3 cut(s)	360, 396, 913
DpnI	GATC	5 cut(s)	5, 111, 708, 882, 1092
DpnII	GATC	5 cut(s)	3, 109, 706, 880, 1090
DrdI	GACNNNNNNGTC	1 cut(s)	1111
DseDI	GACNNNNNNGTC	1 cut(s)	1111
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	1002
Eco147I	AGGCCT	1 cut(s)	989
Eco32I	GATATC	1 cut(s)	904
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	644, 984
EcoRV	GATATC	1 cut(s)	904
EcoT14I	CCWWGG	1 cut(s)	1002
ErhI	CCWWGG	1 cut(s)	1002
FaeI	CATG	2 cut(s)	358, 630
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FatI	CATG	2 cut(s)	354, 626
FauNDI	CATATG	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	674
Fnu4HI	GCNGC	4 cut(s)	63, 555, 828, 1076
FokI	GGATG	2 cut(s)	773, 946
Fsp4HI	GCNGC	4 cut(s)	63, 555, 828, 1076
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	4 cut(s)	63, 555, 828, 1076
GsaI	CCCAGC	3 cut(s)	448, 834, 1059
GsuI	CTGGAG	2 cut(s)	810, 993
HaeIII	GGCC	3 cut(s)	267, 747, 989
Hin1II	CATG	2 cut(s)	358, 630
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	2 cut(s)	809, 1020
HphI	GGTGA	2 cut(s)	35, 911
Hpy166II	GTNNAC	3 cut(s)	301, 380, 675
Hpy188I	TCNGA	3 cut(s)	916, 1042, 1117
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	3 cut(s)	301, 380, 675
HpyAV	CCTTC	9 cut(s)	100, 164, 244, 314, 403, 413, 508, 661, 817
HpyCH4III	ACNGT	2 cut(s)	12, 343
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	141, 476, 557, 764, 820
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 450, 563, 744, 1075
HpyF3I	CTNAG	3 cut(s)	360, 396, 913
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	358, 630
Kzo9I	GATC	5 cut(s)	3, 109, 706, 880, 1090
LmnI	GCTCC	2 cut(s)	156, 1012
Lsp1109I	GCAGC	4 cut(s)	49, 541, 814, 1087
LweI	GCATC	2 cut(s)	678, 751
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	3 cut(s)	124, 425, 947
MalI	GATC	5 cut(s)	5, 111, 708, 882, 1092
MboI	GATC	5 cut(s)	3, 109, 706, 880, 1090
MboII	GAAGA	8 cut(s)	88, 554, 602, 633, 643, 847, 856, 1114
MfeI	CAATTG	2 cut(s)	558, 733
MflI	RGATCY	2 cut(s)	109, 706
MluCI	AATT	7 cut(s)	52, 70, 116, 558, 585, 733, 753
MseI	TTAA	5 cut(s)	251, 431, 714, 752, 1098
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	2 cut(s)	444, 1078
MspR9I	CCNGG	2 cut(s)	646, 986
MunI	CAATTG	2 cut(s)	558, 733
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	2 cut(s)	646, 986
MwoI	GCNNNNNNNGC	5 cut(s)	356, 450, 563, 744, 1075
NdeI	CATATG	1 cut(s)	720
NdeII	GATC	5 cut(s)	3, 109, 706, 880, 1090
NlaIII	CATG	2 cut(s)	358, 630
NlaIV	GGNNCC	1 cut(s)	1008
NmeAIII	GCCGAG	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	989
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	2 cut(s)	809, 1020
PflFI	GACNNNGTC	1 cut(s)	963
PflMI	CCANNNNNTGG	1 cut(s)	1016
PkrI	GCNGC	4 cut(s)	64, 556, 829, 1077
Ppu21I	YACGTR	1 cut(s)	138
PshAI	GACNNNNGTC	1 cut(s)	1085
PshBI	ATTAAT	2 cut(s)	251, 752
PsiI	TTATAA	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	644, 984
PspFI	CCCAGC	3 cut(s)	444, 830, 1055
PspGI	CCWGG	2 cut(s)	644, 984
PspN4I	GGNNCC	1 cut(s)	1008
PspPI	GGNCC	1 cut(s)	746
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	2 cut(s)	109, 706
PsyI	GACNNNGTC	1 cut(s)	963
PvuII	CAGCTG	1 cut(s)	1078
RseI	CAYNNNNRTG	1 cut(s)	136
SaqAI	TTAA	5 cut(s)	251, 431, 714, 752, 1098
SatI	GCNGC	4 cut(s)	63, 555, 828, 1076
Sau3AI	GATC	5 cut(s)	3, 109, 706, 880, 1090
Sau96I	GGNCC	1 cut(s)	746
ScrFI	CCNGG	2 cut(s)	646, 986
SfaNI	GCATC	2 cut(s)	678, 751
SmiMI	CAYNNNNRTG	1 cut(s)	136
Sse9I	AATT	7 cut(s)	52, 70, 116, 558, 585, 733, 753
SseBI	AGGCCT	1 cut(s)	989
SsiI	CCGC	3 cut(s)	423, 442, 602
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	989
StyD4I	CCNGG	2 cut(s)	644, 984
StyI	CCWWGG	1 cut(s)	1002
TaaI	ACNGT	2 cut(s)	12, 343
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	958, 1089
TasI	AATT	7 cut(s)	52, 70, 116, 558, 585, 733, 753
TfiI	GAWTC	2 cut(s)	809, 1020
Tru1I	TTAA	5 cut(s)	251, 431, 714, 752, 1098
Tru9I	TTAA	5 cut(s)	251, 431, 714, 752, 1098
TscAI	CASTG	1 cut(s)	1116
TseI	GCWGC	4 cut(s)	62, 554, 827, 1075
TspDTI	ATGAA	4 cut(s)	119, 326, 510, 1049
TspRI	CASTG	1 cut(s)	1116
Tth111I	GACNNNGTC	1 cut(s)	963
Van91I	CCANNNNNTGG	1 cut(s)	1016
VspI	ATTAAT	2 cut(s)	251, 752
XapI	RAATTY	1 cut(s)	116
XbaI	TCTAGA	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	674
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.