Prupe.7G034000_v2.0.a1

Pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
6352201 .. 6358090
5890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G034000.1

Sequence Viewer

Length: 1860 bp
ATGTGGGCTCTTCGTCGTGCTTCTCTTCCTCTCAGGAGCCAAGCATTTAACATAAGAAGTTCTCGTGCATGTTGTGCTAATTTGGAGCTACCAATCACCTATGGACAAGGGGATGCTTGTTTCCATGAGTCCTGTAAATCAATGCCTGATGGATGCCTGTCATCCAAGAGATTATACTACACAACACAAGTTTCTTGGAACTTCTCAGTGGATAGACGCAGCTTTTCTTCACAAGCTGGTGCAGAAAGCAGTGGAGAGAAAGATGACTTGGAAGATGGGTTTTCTGAACTAGAAACACTACCTAGTGCTGAGGCTTCCCAACATGAAGATGAATTAATTTCTGAACCAGAACTCTCTGAAGATGAAGAAGAAGTTGAGCCTTCTCAACATGAGTTGGAGTTGTCAGAGAATGGGGCTGATTCAATTGAGAAAAGATCACCAAGGAAAAGGAATGTTTCAGAACTGTTCAAGGCCATTTTAGCTTTCCCAGCGTTCTCTGTTCATGGAGCTCTTGATAAGTGGGTTAAAGCAGGAAATGATCTAAATAGGGCAGAGATATCGCTGGCCATGTTCAATTTTCGCAAGCGTCAAATGTTTGGGAGGGCATTACAGCTTTCAGAGTGGTTGGAGGAACATAAGCAGATTGAATTTGTTGAAAGAGATTATGCATCTCGCGTTGACTTAATTGCCAAAGTACGTGGCCTCTATAAGGCAGAGAAATACATTGAGACAATCCCAGCATCCTTTAGAGGTGAGGTAATTTACCGAACCCTGTTGGCATATGCTGTCTCTACCCACAATTTGAAGAAATCTGAAGAAATTTTCAACAAAATGAAGGACCTGGAATTCCCAGTCACACCATTTACTTGCAACCAGTTGCTACTCCTCTACAAGAGGCTTGACAAGAAGAAAATGGCAGATGTATTACTGTTAATGGAGAAAGAAAATGTCAAGCCGACGGCCTTTACTTATAAACTCTTAATAGATACCAAAGGCCAGTCCAATGACATGACTGGAATGGATCAAATTTACGAGACAATGAAGGCTGAAGGCTGTGAGCCAGACATCACTGTAAAAGCCATCTTGGCTAAGCACTACGCTGCTGGCGGGCTTAAAGAAAAAGCTGAGGCAGTTTTGAAAGATATGGAAGGCGGAAACTTAAAAGAGAACCGTTGGGCTTGTCAAGCTTTGCTTCCTCTTTATGCTGAGTTGGGACAGGTTGATGAAGTAGAGAGAGTTTGGAAGGTCTGTGAGTCAAATCCTCGGCTTCAAGAGTTCATGGCTGCAATTAAAGCTTGGGGAATGTTGAATAAAATTGAAGAAGCAGAGGCAGTTTTTGAGAAGATGTCAAATACATTTAAGAAACTTTCTTCAAGGCATTATTATGTGCTTTTGAAGGTCTATGCAAATGGAAAGAAGCTCACCAAGGGTAAAGATCTTGTTAAGCGTATGGCAGATAACAAATGTGACATCGGCCCGTTAACTTGGGATGCACTTGTGAAACTCTATGTGGAAGCAGGTGAGCTTGAAAAGGCTGACTCTATGTTGCAGAAGGCTGCCCAGACGAACCGGAAGAAGCCACTGTTCAATTCTTACATGACCATTATGGAGCAATATTCAAAGAAAGGTGATACCCATAACGCAGAAAAGATGTTTTATAGGATGAGACAGGCTGGTTATATGGCTCGACTTCGTCAGTTCCAAACTCTAATTCAGGCCTACATAAATGCCAAAACTTCACCTTATGGAATCTGGGAGAGGATGAAGGCAGATAATATATTTCCCAACAAATCTTTACTGGCACAGCTGGCACAAGTTGATCCATTTAAGAAGACAGCGGCATCGGATTTGCTTGATTGA

Protein Analysis

620

Amino Acids

70.69

Weight (kDa)

7.1

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 972
AarI CACCTGC 1 cut(s) 1508
Acc36I ACCTGC 1 cut(s) 1508
AccII CGCG 1 cut(s) 675
AciI CCGC 3 cut(s) 1107, 1152, 1838
AclWI GGATC 2 cut(s) 1029, 1814
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 4 cut(s) 647, 819, 845, 1026
AcuI CTGAAG 3 cut(s) 378, 834, 1068
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 1 cut(s) 709
AjnI CCWGG 1 cut(s) 840
AjuI GAANNNNNNNTTGG 4 cut(s) 251, 283, 1695, 1727
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 4 cut(s) 722, 793, 1028, 1660
AlwI GGATC 2 cut(s) 1029, 1814
AoxI GGCC 7 cut(s) 471, 564, 700, 960, 994, 1474, 1716
ApeKI GCWGC 4 cut(s) 219, 1100, 1283, 1556
ApoI RAATTY 4 cut(s) 647, 819, 845, 1026
AseI ATTAAT 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 838, 1475
AsuHPI GGTGA 7 cut(s) 88, 429, 764, 1414, 1532, 1640, 1731
AvaII GGWCC 1 cut(s) 838
BalI TGGCCA 1 cut(s) 566
BanII GRGCYC 2 cut(s) 10, 511
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 1838
Bbv12I GWGCWC 1 cut(s) 511
BbvCI CCTCAGC 2 cut(s) 309, 1125
BbvI GCAGC 4 cut(s) 231, 1087, 1270, 1543
BccI CCATC 3 cut(s) 143, 269, 1088
BceAI ACGGC 1 cut(s) 975
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 1 cut(s) 842
BcoDI GTCTC 4 cut(s) 722, 793, 1028, 1660
BfaI CTAG 2 cut(s) 290, 303
BfuAI ACCTGC 1 cut(s) 1508
BglI GCCNNNNNGGC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 1435
BisI GCNGC 5 cut(s) 220, 1101, 1284, 1557, 1839
BlpI GCTNAGC 1 cut(s) 1089
BlsI GCNGC 5 cut(s) 221, 1102, 1285, 1558, 1840
Bme1390I CCNGG 1 cut(s) 842
Bme18I GGWCC 1 cut(s) 838
BmgT120I GGNCC 2 cut(s) 838, 1475
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 842
BmrI ACTGGG 1 cut(s) 845
BmsI GCATC 6 cut(s) 103, 143, 677, 749, 1480, 1850
BmuI ACTGGG 1 cut(s) 845
BpiI GAAGAC 1 cut(s) 1838
Bpu10I CCTNAGC 2 cut(s) 309, 1125
Bpu1102I GCTNAGC 1 cut(s) 1089
BsaAI YACGTR 1 cut(s) 698
BsaJI CCNNGG 3 cut(s) 440, 1262, 1425
BsaWI WCCGGW 1 cut(s) 1569
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse1I ACTGG 5 cut(s) 851, 874, 997, 1018, 1803
BseBI CCWGG 1 cut(s) 842
BseDI CCNNGG 3 cut(s) 440, 1262, 1425
BseGI GGATG 7 cut(s) 118, 158, 161, 740, 1495, 1668, 1767
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMII CTCAG 5 cut(s) 46, 219, 300, 1116, 1197
BseNI ACTGG 5 cut(s) 851, 874, 997, 1018, 1803
BseRI GAGGAG 1 cut(s) 875
BseXI GCAGC 4 cut(s) 231, 1087, 1270, 1543
BseYI CCCAGC 2 cut(s) 487, 736
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 7 cut(s) 473, 566, 702, 962, 996, 1476, 1718
BsiHKAI GWGCWC 1 cut(s) 511
BsiSI CCGG 1 cut(s) 1570
BslFI GGGAC 1 cut(s) 1227
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 4 cut(s) 722, 793, 1028, 1660
BsmFI GGGAC 1 cut(s) 1227
BsnI GGCC 7 cut(s) 473, 566, 702, 962, 996, 1476, 1718
Bsp1286I GDGCHC 2 cut(s) 10, 511
Bsp143I GATC 5 cut(s) 434, 538, 1021, 1435, 1819
Bsp1720I GCTNAGC 1 cut(s) 1089
BspACI CCGC 3 cut(s) 1107, 1152, 1838
BspANI GGCC 7 cut(s) 473, 566, 702, 962, 996, 1476, 1718
BspCNI CTCAG 5 cut(s) 45, 218, 301, 1117, 1198
BspFNI CGCG 1 cut(s) 675
BspLI GGNNCC 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 1508
BspPI GGATC 2 cut(s) 1029, 1814
BspQI GCTCTTC 1 cut(s) 15
BsrI ACTGG 5 cut(s) 851, 874, 997, 1018, 1803
BssECI CCNNGG 3 cut(s) 440, 1262, 1425
BssMI GATC 5 cut(s) 434, 538, 1021, 1435, 1819
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 440, 1425
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 842
Bst4CI ACNGT 5 cut(s) 465, 930, 1072, 1172, 1584
Bst6I CTCTTC 2 cut(s) 15, 30
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 698
BstC8I GCNNGC 5 cut(s) 564, 584, 1105, 1109, 1809
BstDEI CTNAG 6 cut(s) 32, 205, 309, 1089, 1125, 1206
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 7 cut(s) 118, 158, 161, 740, 1495, 1668, 1767
BstFNI CGCG 1 cut(s) 675
BstKTI GATC 5 cut(s) 437, 541, 1024, 1438, 1822
BstMAI GTCTC 4 cut(s) 722, 793, 1028, 1660
BstMBI GATC 5 cut(s) 434, 538, 1021, 1435, 1819
BstMWI GCNNNNNNNGC 7 cut(s) 74, 479, 488, 1085, 1184, 1292, 1808
BstNI CCWGG 1 cut(s) 842
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 840
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 4 cut(s) 231, 1087, 1270, 1543
BstV2I GAAGAC 1 cut(s) 1838
BstX2I RGATCY 1 cut(s) 1435
BstYI RGATCY 1 cut(s) 1435
BsuRI GGCC 7 cut(s) 473, 566, 702, 962, 996, 1476, 1718
BtsCI GGATG 7 cut(s) 118, 158, 161, 740, 1495, 1668, 1767
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 4 cut(s) 213, 256, 1068, 1580
BveI ACCTGC 1 cut(s) 1508
Cac8I GCNNGC 5 cut(s) 564, 584, 1105, 1109, 1809
Cfr13I GGNCC 2 cut(s) 838, 1475
CseI GACGC 2 cut(s) 225, 575
Csp6I GTAC 1 cut(s) 695
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 9 cut(s) 69, 125, 323, 389, 503, 568, 1009, 1279, 1597
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 6 cut(s) 32, 205, 309, 1089, 1125, 1206
DpnI GATC 5 cut(s) 436, 540, 1023, 1437, 1821
DpnII GATC 5 cut(s) 434, 538, 1021, 1435, 1819
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 15, 30
EarI CTCTTC 2 cut(s) 15, 30
EciI GGCGGA 1 cut(s) 1167
Ecl136II GAGCTC 1 cut(s) 509
Eco130I CCWWGG 2 cut(s) 440, 1425
Eco147I AGGCCT 1 cut(s) 1718
Eco24I GRGCYC 2 cut(s) 10, 511
Eco32I GATATC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 838
Eco53kI GAGCTC 1 cut(s) 509
Eco57I CTGAAG 3 cut(s) 378, 834, 1068
EcoICRI GAGCTC 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 838
EcoRI GAATTC 1 cut(s) 845
EcoRII CCWGG 1 cut(s) 840
EcoRV GATATC 1 cut(s) 558
EcoT14I CCWWGG 2 cut(s) 440, 1425
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 2 cut(s) 10, 511
ErhI CCWWGG 2 cut(s) 440, 1425
FaeI CATG 9 cut(s) 72, 128, 326, 392, 506, 571, 1012, 1282, 1600
FalI AAGNNNNNCTT 2 cut(s) 1176, 1208
FaqI GGGAC 1 cut(s) 1227
FatI CATG 9 cut(s) 68, 124, 322, 388, 502, 567, 1008, 1278, 1596
FauI CCCGC 1 cut(s) 1100
FauNDI CATATG 1 cut(s) 781
Fnu4HI GCNGC 5 cut(s) 220, 1101, 1284, 1557, 1839
FokI GGATG 7 cut(s) 125, 148, 165, 727, 1502, 1675, 1774
FriOI GRGCYC 2 cut(s) 10, 511
Fsp4HI GCNGC 5 cut(s) 220, 1101, 1284, 1557, 1839
FspBI CTAG 2 cut(s) 290, 303
GluI GCNGC 5 cut(s) 220, 1101, 1284, 1557, 1839
GsaI CCCAGC 2 cut(s) 491, 740
HaeIII GGCC 7 cut(s) 473, 566, 702, 962, 996, 1476, 1718
HapII CCGG 1 cut(s) 1570
HgaI GACGC 2 cut(s) 225, 575
Hin1II CATG 9 cut(s) 72, 128, 326, 392, 506, 571, 1012, 1282, 1600
HincII GTYRAC 2 cut(s) 679, 1482
HindII GTYRAC 2 cut(s) 679, 1482
HindIII AAGCTT 2 cut(s) 1185, 1293
HinfI GANTC 5 cut(s) 128, 419, 1253, 1538, 1749
HpaI GTTAAC 1 cut(s) 1482
HpaII CCGG 1 cut(s) 1570
HphI GGTGA 7 cut(s) 88, 429, 764, 1414, 1532, 1640, 1731
Hpy166II GTNNAC 2 cut(s) 679, 1482
Hpy188I TCNGA 8 cut(s) 286, 343, 358, 406, 460, 619, 814, 1846
Hpy188III TCNNGA 3 cut(s) 34, 512, 1271
Hpy8I GTNNAC 2 cut(s) 679, 1482
Hpy99I CGWCG 2 cut(s) 18, 961
HpyAV CCTTC 9 cut(s) 390, 829, 1036, 1043, 1142, 1237, 1390, 1546, 1759
HpyCH4III ACNGT 5 cut(s) 465, 930, 1072, 1172, 1584
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 8 cut(s) 68, 242, 668, 870, 1286, 1406, 1493, 1549
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 479, 488, 1085, 1184, 1292, 1808
HpyF3I CTNAG 6 cut(s) 32, 205, 309, 1089, 1125, 1206
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 9 cut(s) 72, 128, 326, 392, 506, 571, 1012, 1282, 1600
KspAI GTTAAC 1 cut(s) 1482
Kzo9I GATC 5 cut(s) 434, 538, 1021, 1435, 1819
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 4 cut(s) 36, 85, 506, 1609
Lsp1109I GCAGC 4 cut(s) 231, 1087, 1270, 1543
LweI GCATC 6 cut(s) 103, 143, 677, 749, 1480, 1850
MaeI CTAG 2 cut(s) 290, 303
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 2 cut(s) 853, 1466
MalI GATC 5 cut(s) 436, 540, 1023, 1437, 1821
MboI GATC 5 cut(s) 434, 538, 1021, 1435, 1819
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 1 cut(s) 1435
MhlI GDGCHC 2 cut(s) 10, 511
MlsI TGGCCA 1 cut(s) 566
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 3 cut(s) 137, 1262, 1532
MmeI TCCRAC 2 cut(s) 375, 606
Mox20I TGGCCA 1 cut(s) 566
Mph1103I ATGCAT 1 cut(s) 670
MscI TGGCCA 1 cut(s) 566
MslI CAYNNNNRTG 2 cut(s) 327, 1383
Msp20I TGGCCA 1 cut(s) 566
MspA1I CMGCKG 2 cut(s) 1807, 1838
MspI CCGG 1 cut(s) 1570
MspR9I CCNGG 1 cut(s) 842
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 842
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 7 cut(s) 74, 479, 488, 1085, 1184, 1292, 1808
NdeI CATATG 1 cut(s) 781
NdeII GATC 5 cut(s) 434, 538, 1021, 1435, 1819
NlaIII CATG 9 cut(s) 72, 128, 326, 392, 506, 571, 1012, 1282, 1600
NlaIV GGNNCC 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 1243
NmuCI GTSAC 2 cut(s) 853, 1466
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 1508
PceI AGGCCT 1 cut(s) 1718
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 419, 1749
PflFI GACNNNGTC 1 cut(s) 1692
PkrI GCNGC 5 cut(s) 221, 1102, 1285, 1558, 1840
PleI GAGTC 3 cut(s) 136, 1261, 1532
PpsI GAGTC 3 cut(s) 136, 1261, 1532
Ppu21I YACGTR 1 cut(s) 698
PpuMI RGGWCCY 1 cut(s) 838
PshBI ATTAAT 1 cut(s) 335
PsiI TTATAA 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 838
Psp6I CCWGG 1 cut(s) 840
PspFI CCCAGC 2 cut(s) 487, 736
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 2 cut(s) 838, 1475
PspPPI RGGWCCY 1 cut(s) 838
PsuI RGATCY 1 cut(s) 1435
PsyI GACNNNGTC 1 cut(s) 1692
PvuII CAGCTG 1 cut(s) 1807
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
RseI CAYNNNNRTG 2 cut(s) 327, 1383
SacI GAGCTC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 15
SatI GCNGC 5 cut(s) 220, 1101, 1284, 1557, 1839
Sau3AI GATC 5 cut(s) 434, 538, 1021, 1435, 1819
Sau96I GGNCC 2 cut(s) 838, 1475
SchI GAGTC 3 cut(s) 137, 1262, 1532
ScrFI CCNGG 1 cut(s) 842
SduI GDGCHC 2 cut(s) 10, 511
SfaNI GCATC 6 cut(s) 103, 143, 677, 749, 1480, 1850
SinI GGWCC 1 cut(s) 838
SmiMI CAYNNNNRTG 2 cut(s) 327, 1383
SseBI AGGCCT 1 cut(s) 1718
SsiI CCGC 3 cut(s) 1107, 1152, 1838
SspI AATATT 1 cut(s) 1616
SspMI CTAG 2 cut(s) 290, 303
SstI GAGCTC 1 cut(s) 511
StuI AGGCCT 1 cut(s) 1718
StyD4I CCNGG 1 cut(s) 840
StyI CCWWGG 2 cut(s) 440, 1425
TaaI ACNGT 5 cut(s) 465, 930, 1072, 1172, 1584
TaiI ACGT 1 cut(s) 700
TaqI TCGA 1 cut(s) 1687
TauI GCSGC 1 cut(s) 1841
TfiI GAWTC 2 cut(s) 419, 1749
TscAI CASTG 4 cut(s) 213, 256, 1075, 1587
TseFI GTSAC 2 cut(s) 853, 1466
TseI GCWGC 4 cut(s) 219, 1100, 1283, 1556
Tsp45I GTSAC 2 cut(s) 853, 1466
TspDTI ATGAA 9 cut(s) 339, 345, 378, 491, 848, 1055, 1239, 1267, 1778
TspRI CASTG 4 cut(s) 213, 256, 1075, 1587
Tth111I GACNNNGTC 1 cut(s) 1692
VpaK11BI GGWCC 1 cut(s) 838
VspI ATTAAT 1 cut(s) 335
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 4 cut(s) 647, 819, 845, 1026
XceI RCATGY 1 cut(s) 72
XspI CTAG 2 cut(s) 290, 303
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.