FvH4_6g25350

Pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
19191215 .. 19197098
5884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25350.t1

Sequence Viewer

Length: 1878 bp
ATGTGGGCTCTTCGTCGTGTATCTCTTCCTCTCAGGAAGCAAGGATTCAGCGTTGGAACTTCCCGTGCTTGTTGTGCTAATTTGGAGCTACCGATTACTTACATACAAGACAAGTCTTTCTTCCTTGAGTCTCCTCAGTTGGGATCTGATGGATTTCTGCCTTCGAAGAGATTATACACAACAAATGTTTTGTCAAAGTTTTCTGTAGATAGATGCAGCCTTTCTTCACAAGCTGGTACAGAAAGCAGTGGAGAGGAAGATGACTTGGAAGATGGGTTTTCCAAACTTGAAACGCCTCCTACTGCTGAGGTAGTTCAAGCGAGCAATGCAAATGATGAAAATGAAGATGAATTAGTATCTGGACCAGAAATCTCTGATGATGAAGCAGACATTGAGCCTTCTCAAAATGAGCTGGAGTTATCAGAGATTGAGACCGATCTAAATGATAAACTGTCACCAAGGAGAAGGGATGTTTCAGCACTTTTCAAAGCCATCTTAGAATTTCCGGGTTTTTCTGTTCATAGTGCTCTGGATAAGTGGGTTAAAGAAGGAAATGATTTAAGCAGGGCAGAGATCTCATTAACCAAGATAAACTTGCGCAGGCGTCGAATGTTTGGGAGGGCATTGCAGCTCTCAGAGTGGTTGGAGGCACATAAGCAGATTGAATTTTCTGAAAGAGATTATGCATCTCGTCTAGACTTAATTGCCAAAGTATATGGCCTCTGGAAGGCAGAGAAGTATGTTGAGATGATCCCACAATCCTTTAGAGGTGAAAAAATCTACCGAACTCTGTTGGTTAACTGCGTTGGTGCCAACAATTTGAAGAAAGCCGAGGAGATTTTCAACAAAATGAAGGATCTAGAATTCCCATTTACCTCATTTACTTGCAACCAGTTGCTCCTTCTTTACAAGAGGCTTGACAAGAAGAAAATAGCAGATGTCTTGCTTTTTATGGAGAAAGAAAATGTGAAGCCGACTGCCTTCACTTATAAGCTATTAATAGCTACTAAAGGCGAATCCAATGACATAGCTGGAATGGAACAAGTTTACGGAACAATGAAGAGTGAAGGCATTGAACCAGACATTACTGTTAAAGCTGTCATGGCTAAGCATTATGCCTCTGGCGGACTGAAAGAAAAAGCTGAGGCTGTTTTGAAGGAGATGGAAGGGGGTAACTTAAAGGAGAACCGCTGGGCTTGCCGAGCTTTGCTGCCCCTTTATGCAGAGCTGGGTCAGGTTGATGAAGTGGGGAGAGTTTGGAATGTTTGCATGCCAAAACCTTGGGTTGAAGAATGCATGGCTGCAATCGAAGCTTGGGGAAAGTTAAATAAAATTGAAGAAGCTGAGGCAGTTTTTGATAAGATGTTGAAAACCTGGAAGAGGCTTTCTTCCAGGCAGTATGCTGTTCTTTTGCAGGTTTATACAAACCATAAGATGATTGAGAAGGGCAAAGATCTTGTTAAGCGTATGGTAGATAACAATTGTGAGGTTGACCCATTAATTTGGGATGCACTTGTAAAACTCTATGTGGAAATTGGAGAGGTTGAAAAGGCTGACTCAATTTTGCGGAAGGCTGCTGAGAAGAACCATAAGAAGCCAATGTTCAGTTCTTATATGGCTCTTATGGATCAATATTCAAAGAGGGGTGATATTCATAACTCAGAAAAGATATTTTATAGGATGAGACGGGACGGTTACACAGCTCGACTTCGTCAGTTCCAATCACTTGTCCAGGCCTATATAAATGCAAAGGCTCCAGCCTACGGACTCTGGGAGAGAATGAAGTCAGATAATTTCTTCCCCAACAAAGCTCTGCTTGGGCAGCTCTCACAAGTCGATCCATTTAAGAAGACAGCAGTGTCTGATCTGCTTGATTGA

Protein Analysis

626

Amino Acids

71.33

Weight (kDa)

6.11

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 990
AasI GACNNNNNNGTC 1 cut(s) 1858
Acc16I TGCGCA 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 1405
AccB1I GGYRCC 1 cut(s) 809
AciI CCGC 3 cut(s) 1125, 1189, 1567
AclWI GGATC 5 cut(s) 151, 745, 864, 1635, 1832
AcsI RAATTY 3 cut(s) 500, 665, 863
AcyI GRCGYC 1 cut(s) 604
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 4 cut(s) 140, 727, 1380, 1763
AjnI CCWGG 3 cut(s) 1373, 1391, 1731
AjuI GAANNNNNNNTTGG 2 cut(s) 1591, 1623
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 3 cut(s) 135, 425, 1678
AlwI GGATC 5 cut(s) 151, 745, 864, 1635, 1832
AlwNI CAGNNNCTG 1 cut(s) 1862
AoxI GGCC 2 cut(s) 718, 1734
ApeKI GCWGC 6 cut(s) 216, 628, 1210, 1301, 1574, 1822
ApoI RAATTY 3 cut(s) 500, 665, 863
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AseI ATTAAT 2 cut(s) 998, 1499
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 3 cut(s) 447, 782, 1658
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 809
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BbsI GAAGAC 1 cut(s) 1856
Bbv12I GWGCWC 1 cut(s) 529
BbvCI CCTCAGC 3 cut(s) 306, 1143, 1344
BbvI GCAGC 6 cut(s) 228, 640, 1197, 1288, 1561, 1834
BccI CCATC 4 cut(s) 143, 266, 500, 1156
BciT130I CCWGG 3 cut(s) 1375, 1393, 1733
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 3 cut(s) 135, 425, 1678
BfaI CTAG 2 cut(s) 695, 860
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 1405
BglII AGATCT 2 cut(s) 573, 1453
BisI GCNGC 6 cut(s) 217, 629, 1211, 1302, 1575, 1823
BlpI GCTNAGC 1 cut(s) 1107
BlsI GCNGC 6 cut(s) 218, 630, 1212, 1303, 1576, 1824
Bme1390I CCNGG 4 cut(s) 507, 1375, 1393, 1733
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 811, 1755
BmrFI CCNGG 4 cut(s) 507, 1375, 1393, 1733
BmsI GCATC 3 cut(s) 203, 695, 1498
BpiI GAAGAC 1 cut(s) 1856
BpmI CTGGAG 2 cut(s) 434, 1740
Bpu10I CCTNAGC 3 cut(s) 306, 1143, 1344
Bpu1102I GCTNAGC 1 cut(s) 1107
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 3 cut(s) 458, 831, 1280
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 727, 1380, 1763
Bse1I ACTGG 1 cut(s) 892
Bse3DI GCAATG 2 cut(s) 331, 623
BseBI CCWGG 3 cut(s) 1375, 1393, 1733
BseDI CCNNGG 3 cut(s) 458, 831, 1280
BseGI GGATG 3 cut(s) 475, 1513, 1686
BseLI CCNNNNNNNGG 4 cut(s) 140, 727, 1380, 1763
BseMI GCAATG 2 cut(s) 331, 623
BseMII CTCAG 8 cut(s) 46, 149, 297, 648, 1134, 1335, 1569, 1674
BseNI ACTGG 1 cut(s) 892
BseRI GAGGAG 2 cut(s) 123, 848
BseXI GCAGC 6 cut(s) 228, 640, 1197, 1288, 1561, 1834
BseYI CCCAGC 2 cut(s) 1191, 1228
BshFI GGCC 2 cut(s) 720, 1736
BshNI GGYRCC 1 cut(s) 809
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 1703
BslI CCNNNNNNNGG 4 cut(s) 140, 727, 1380, 1763
BsmAI GTCTC 3 cut(s) 135, 425, 1678
BsmBI CGTCTC 1 cut(s) 1678
BsmFI GGGAC 1 cut(s) 1703
BsmI GAATGC 1 cut(s) 1298
BsnI GGCC 2 cut(s) 720, 1736
Bso31I GGTCTC 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 10, 529
Bsp143I GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
Bsp1720I GCTNAGC 1 cut(s) 1107
BspACI CCGC 3 cut(s) 1125, 1189, 1567
BspANI GGCC 2 cut(s) 720, 1736
BspCNI CTCAG 8 cut(s) 45, 148, 298, 647, 1135, 1336, 1570, 1673
BspLI GGNNCC 2 cut(s) 811, 1755
BspMI ACCTGC 1 cut(s) 1405
BspPI GGATC 5 cut(s) 151, 745, 864, 1635, 1832
BspQI GCTCTTC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 809
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 331, 623
BsrI ACTGG 1 cut(s) 892
BssECI CCNNGG 3 cut(s) 458, 831, 1280
BssMI GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
BssNI GRCGYC 1 cut(s) 604
BssT1I CCWWGG 2 cut(s) 458, 1280
Bst2UI CCWGG 3 cut(s) 1375, 1393, 1733
Bst4CI ACNGT 3 cut(s) 453, 1090, 1694
Bst6I CTCTTC 5 cut(s) 15, 30, 161, 1055, 1373
BstACI GRCGYC 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 4 cut(s) 322, 602, 1198, 1271
BstENI CCTNNNNNAGG 2 cut(s) 725, 1378
BstF5I GGATG 3 cut(s) 475, 1513, 1686
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 9 cut(s) 146, 439, 576, 753, 859, 1456, 1630, 1840, 1867
BstMAI GTCTC 3 cut(s) 135, 425, 1678
BstMBI GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
BstMWI GCNNNNNNNGC 7 cut(s) 74, 326, 1103, 1197, 1202, 1310, 1822
BstNI CCWGG 3 cut(s) 1375, 1393, 1733
BstNSI RCATGY 1 cut(s) 1273
BstSCI CCNGG 4 cut(s) 505, 1373, 1391, 1731
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 6 cut(s) 228, 640, 1197, 1288, 1561, 1834
BstV2I GAAGAC 1 cut(s) 1856
BstX2I RGATCY 4 cut(s) 143, 573, 856, 1453
BstXI CCANNNNNNTGG 2 cut(s) 1281, 1503
BstYI RGATCY 4 cut(s) 143, 573, 856, 1453
BsuRI GGCC 2 cut(s) 720, 1736
BtsCI GGATG 3 cut(s) 475, 1513, 1686
BtsI GCAGTG 2 cut(s) 253, 1863
BtsIMutI CAGTG 2 cut(s) 253, 1863
BveI ACCTGC 1 cut(s) 1405
Cac8I GCNNGC 4 cut(s) 322, 602, 1198, 1271
CaiI CAGNNNCTG 1 cut(s) 1862
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 362
CseI GACGC 1 cut(s) 593
Csp6I GTAC 1 cut(s) 237
CviAII CATG 3 cut(s) 1102, 1270, 1297
CviQI GTAC 1 cut(s) 237
DpnI GATC 9 cut(s) 145, 438, 575, 752, 858, 1455, 1629, 1839, 1866
DpnII GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
DrdI GACNNNNNNGTC 1 cut(s) 1858
DseDI GACNNNNNNGTC 1 cut(s) 1858
Eam1104I CTCTTC 5 cut(s) 15, 30, 161, 1055, 1373
EarI CTCTTC 5 cut(s) 15, 30, 161, 1055, 1373
EciI GGCGGA 1 cut(s) 1140
Eco130I CCWWGG 2 cut(s) 458, 1280
Eco147I AGGCCT 1 cut(s) 1736
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 362
EcoNI CCTNNNNNAGG 2 cut(s) 725, 1378
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 3 cut(s) 1373, 1391, 1731
EcoT14I CCWWGG 2 cut(s) 458, 1280
EcoT22I ATGCAT 2 cut(s) 688, 1298
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 458, 1280
Esp3I CGTCTC 1 cut(s) 1678
FaeI CATG 3 cut(s) 1105, 1273, 1300
FalI AAGNNNNNCTT 6 cut(s) 104, 136, 578, 610, 1800, 1832
FaqI GGGAC 1 cut(s) 1703
FatI CATG 3 cut(s) 1101, 1269, 1296
Fnu4HI GCNGC 6 cut(s) 217, 629, 1211, 1302, 1575, 1823
FokI GGATG 3 cut(s) 482, 1520, 1693
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 6 cut(s) 217, 629, 1211, 1302, 1575, 1823
FspBI CTAG 2 cut(s) 695, 860
FspI TGCGCA 1 cut(s) 599
GlaI GCGC 1 cut(s) 599
GluI GCNGC 6 cut(s) 217, 629, 1211, 1302, 1575, 1823
GsaI CCCAGC 2 cut(s) 1195, 1232
GsuI CTGGAG 2 cut(s) 434, 1740
HaeIII GGCC 2 cut(s) 720, 1736
HapII CCGG 1 cut(s) 506
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 600
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 3 cut(s) 1105, 1273, 1300
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HincII GTYRAC 2 cut(s) 799, 1492
HindII GTYRAC 2 cut(s) 799, 1492
HindIII AAGCTT 1 cut(s) 1311
HinfI GANTC 5 cut(s) 45, 128, 1016, 1556, 1767
HpaI GTTAAC 1 cut(s) 799
HpaII CCGG 1 cut(s) 506
HphI GGTGA 3 cut(s) 447, 782, 1658
Hpy166II GTNNAC 3 cut(s) 799, 1048, 1492
Hpy188I TCNGA 8 cut(s) 148, 376, 424, 637, 673, 1663, 1789, 1864
Hpy188III TCNNGA 6 cut(s) 34, 360, 530, 695, 724, 860
Hpy8I GTNNAC 3 cut(s) 799, 1048, 1492
Hpy99I CGWCG 2 cut(s) 18, 609
HpyCH4III ACNGT 3 cut(s) 453, 1090, 1694
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 326, 1103, 1197, 1202, 1310, 1822
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 3 cut(s) 1105, 1273, 1300
HspAI GCGC 1 cut(s) 598
KspAI GTTAAC 1 cut(s) 799
Kzo9I GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 85, 903, 1759
Lsp1109I GCAGC 6 cut(s) 228, 640, 1197, 1288, 1561, 1834
LweI GCATC 3 cut(s) 203, 695, 1498
MaeI CTAG 2 cut(s) 695, 860
MaeIII GTNAC 3 cut(s) 453, 1172, 1694
MalI GATC 9 cut(s) 145, 438, 575, 752, 858, 1455, 1629, 1839, 1866
MboI GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
MfeI CAATTG 1 cut(s) 1480
MflI RGATCY 4 cut(s) 143, 573, 856, 1453
MhlI GDGCHC 2 cut(s) 10, 529
MlyI GAGTC 3 cut(s) 137, 1550, 1761
MmeI TCCRAC 2 cut(s) 34, 624
Mph1103I ATGCAT 2 cut(s) 688, 1298
MspA1I CMGCKG 1 cut(s) 1191
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 4 cut(s) 507, 1375, 1393, 1733
MunI CAATTG 1 cut(s) 1480
Mva1269I GAATGC 1 cut(s) 1298
MvaI CCWGG 3 cut(s) 1375, 1393, 1733
MwoI GCNNNNNNNGC 7 cut(s) 74, 326, 1103, 1197, 1202, 1310, 1822
NciI CCSGG 1 cut(s) 507
NdeII GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
NlaIII CATG 3 cut(s) 1105, 1273, 1300
NlaIV GGNNCC 2 cut(s) 811, 1755
NmeAIII GCCGAG 2 cut(s) 856, 1226
NmuCI GTSAC 1 cut(s) 453
NsbI TGCGCA 1 cut(s) 599
NsiI ATGCAT 2 cut(s) 688, 1298
NspI RCATGY 1 cut(s) 1273
NspV TTCGAA 1 cut(s) 164
PaeI GCATGC 1 cut(s) 1273
PceI AGGCCT 1 cut(s) 1736
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 1 cut(s) 1298
PfeI GAWTC 2 cut(s) 45, 1016
PflFI GACNNNGTC 1 cut(s) 1710
PkrI GCNGC 6 cut(s) 218, 630, 1212, 1303, 1576, 1824
PleI GAGTC 3 cut(s) 136, 1550, 1761
PpsI GAGTC 3 cut(s) 136, 1550, 1761
PshBI ATTAAT 2 cut(s) 998, 1499
PsiI TTATAA 1 cut(s) 990
Psp6I CCWGG 3 cut(s) 1373, 1391, 1731
PspFI CCCAGC 2 cut(s) 1191, 1228
PspGI CCWGG 3 cut(s) 1373, 1391, 1731
PspN4I GGNNCC 2 cut(s) 811, 1755
PspPI GGNCC 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 1862
PsuI RGATCY 4 cut(s) 143, 573, 856, 1453
PsyI GACNNNGTC 1 cut(s) 1710
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 15
SatI GCNGC 6 cut(s) 217, 629, 1211, 1302, 1575, 1823
Sau3AI GATC 9 cut(s) 143, 436, 573, 750, 856, 1453, 1627, 1837, 1864
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 3 cut(s) 137, 1550, 1761
ScrFI CCNGG 4 cut(s) 507, 1375, 1393, 1733
SduI GDGCHC 2 cut(s) 10, 529
SfaNI GCATC 3 cut(s) 203, 695, 1498
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SphI GCATGC 1 cut(s) 1273
SseBI AGGCCT 1 cut(s) 1736
SsiI CCGC 3 cut(s) 1125, 1189, 1567
SspI AATATT 1 cut(s) 1634
SspMI CTAG 2 cut(s) 695, 860
StuI AGGCCT 1 cut(s) 1736
StyD4I CCNGG 4 cut(s) 505, 1373, 1391, 1731
StyI CCWWGG 2 cut(s) 458, 1280
TaaI ACNGT 3 cut(s) 453, 1090, 1694
TaqI TCGA 5 cut(s) 164, 607, 1308, 1705, 1836
TaqII GACCGA 1 cut(s) 449
TfiI GAWTC 2 cut(s) 45, 1016
TscAI CASTG 2 cut(s) 253, 1863
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 6 cut(s) 216, 628, 1210, 1301, 1574, 1822
Tsp45I GTSAC 1 cut(s) 453
TspGWI ACGGA 2 cut(s) 1065, 1779
TspRI CASTG 2 cut(s) 253, 1863
Tth111I GACNNNGTC 1 cut(s) 1710
VpaK11BI GGWCC 1 cut(s) 362
VspI ATTAAT 2 cut(s) 998, 1499
XagI CCTNNNNNAGG 2 cut(s) 725, 1378
XapI RAATTY 3 cut(s) 500, 665, 863
XbaI TCTAGA 2 cut(s) 694, 859
XceI RCATGY 1 cut(s) 1273
XspI CTAG 2 cut(s) 695, 860
Zsp2I ATGCAT 2 cut(s) 688, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.