pycom12g08300

Pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
9470178 .. 9473675
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g08300.1

Sequence Viewer

Length: 1881 bp
ATGTGGGCTCTCCGCCGTGCTTCTCTTCCTCTCAGGAACCGAGCATTCAACATAGGAACTTCTCGTGTATGTTGTGCTAATTTGGAGCTACCAATTACTGACAGACATGAGGATGTTTGTTTCTTTGAGTCCTGTAAATCATTGTCTGATGAATGTCTGCCTTCCAAGAGACTATACCACACAACATGTGTTTCTTGGAACTTCTCCATGGATAAACGCAGCCTTTCTTCACAAGCTGGTGCAAAAAGCAATGGCGAGGAAGATGACTTGGAAGATGGGTTCTCTGAACTTGAAACACCATCTAGTGTTGAAGCAATTCCAGAGATCAATGGAAATGATGAAAATGTAGATGAATTAATTTCTGAACCAGAACTCTCTGAAGTTGATGAAGAAGTTGAGGCTTCCCAACATGAGCTGGAGTTGTCAGAGACTGAGACCGATCCAAGTGAGAAAATATTGCGAAAGAAAAGAAACCCTTTAGCACTTTACAAGGCCATCTTAGCTTTCCCAGGTTTCTCTGTTCATGGTGCTCTTGATAAGTGGGTAGAAGAAGGAAATGAAATAAACCGGACACAGATATCAATGGCCCTGCTTAATTTTCGCAGGCGTCAAATGTTTGGGAGGGCATTACAGCTTTCAGAGTGGTTGGAGGAGCATAAGAAGATTGAATTTAATGAAAGAGATTATGCAACTCGTCTCGGCTTAATCGCCAAAGTACGTGGCCTCCAAAAGGCAGAAAACTATCTCGAGAAGATTCCAAAATCCTTTAGAGGTGAGGTAATGTACCGAACCCTGTTGACGTACTGTGTCTCTACCAGCAATATGAAGAAAGCCGAAGAAGTTTTCAACAAAATGAATGACCTAGAATTCCCGGTCACAGCATTTACTTGCAACCAGTTGCTACTCCTCTACAAGAGGCTTGACAAGAAGAAAATACCAGCTGTATTACTGTTAATGGAGAAAGAAGATGTCAAGCCAACTGCCTTCACATATAAAGTCCTAATAGATACAAAAGGCCAGTCAAATGACATAACTGGAATGGAGCAAGTTTATGAGACAATGAAGGCAGAAGGCATTGAGCCAGACATCAGCACAAAAGCCACCTTGGCTAGGCACTATGCCACTGGCGGGCTTGAAGAAAAAGCCGAGGTGGTTTTGAAGGACATGGAATCTGGAAGCTTAAAACAGAATCGTTGGGTTTGTCGATCTTTGCTTCCCCTTTATGCTGAGTTGGGAAATGCCAACGAAGTAGAGAGAGTTTGGAAGGTTTGTGAATCAAATCCTCTGTTTGTAGAGTGTTTGGCTGCAATCGAAGCTTGGGGAAAGTTGAAAAAGATTGAAGAAGCAGAGGCAGTTTTTGATAAGATGTTAAAATCAGGGAAGATACTTTCTTCCAAGCATTATTCTGTGATGTTGAAGGTGTATGCGAACAATAAAATGCTAGACAAGGGTAAAGATCTTGTCAAGCGTATGGCAGATAACGATTGCGAGATTGGGCCATTAACTTGGGATGCACTTGTGAAACTCTATGTGGAAGCAGGAAAGGTTGGAAAGGCTGATTCTATTTTGCAGAAGGCTACCCAAAACAACCAAAAGAAGCCACTGTTCACTTCTTATATGACAATTTTGGAACAATATTCAAAGAAGGGGGACATCCATAACTCAGAAAAGATATTTCATAGGATGAGACAGGCTGGTTATATGCCTCACCTTCGTCAGTTCCAATCTCTTATTCAGGCCTATGTAAATGCCAAGGCTCCAGCTTATGGAATCTGGGAGAGGATGAAAGCAGATAATGTCTTTCCCAACAAATCTGCACTGGCACAGTTGACACAAGTTAATCCATTTAAGAAGACAGCAGTGTCGGATTTGTTTGATTGA

Protein Analysis

627

Amino Acids

71.34

Weight (kDa)

6.19

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1861
AccB7I CCANNNNNTGG 1 cut(s) 1766
AciI CCGC 2 cut(s) 13, 1128
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 2 cut(s) 668, 866
AcuI CTGAAG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 607
AfaI GTAC 3 cut(s) 717, 785, 803
AfiI CCNNNNNNNGG 4 cut(s) 730, 1110, 1128, 1766
AflIII ACRYGT 1 cut(s) 185
AjnI CCWGG 1 cut(s) 508
AjuI GAANNNNNNNTTGG 2 cut(s) 1716, 1748
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 9 cut(s) 88, 236, 415, 503, 634, 941, 1179, 1316, 1763
AluI AGCT 9 cut(s) 88, 236, 415, 503, 634, 941, 1179, 1316, 1763
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 7 cut(s) 163, 422, 428, 701, 814, 1049, 1681
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 746
AoxI GGCC 6 cut(s) 492, 585, 721, 1015, 1496, 1737
ApeKI GCWGC 2 cut(s) 219, 1304
ApoI RAATTY 2 cut(s) 668, 866
ArsI GACNNNNNNTTYG 2 cut(s) 1004, 1036
AseI ATTAAT 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 586, 1496
AsuC2I CCSGG 1 cut(s) 872
AsuHPI GGTGA 2 cut(s) 785, 1700
AvaI CYCGRG 1 cut(s) 746
BanII GRGCYC 1 cut(s) 10
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 1859
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 231, 1291
BccI CCATC 3 cut(s) 269, 307, 503
BciT130I CCWGG 1 cut(s) 510
BcnI CCSGG 1 cut(s) 872
BcoDI GTCTC 7 cut(s) 163, 422, 428, 701, 814, 1049, 1681
BfaI CTAG 4 cut(s) 303, 863, 1110, 1442
BglI GCCNNNNNGGC 1 cut(s) 1106
BglII AGATCT 1 cut(s) 1456
BisI GCNGC 2 cut(s) 220, 1305
BlsI GCNGC 2 cut(s) 221, 1306
Bme1390I CCNGG 2 cut(s) 510, 872
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 586, 1496
BmiI GGNNCC 2 cut(s) 38, 1758
BmrFI CCNGG 2 cut(s) 510, 872
BmsI GCATC 1 cut(s) 1501
BpiI GAAGAC 1 cut(s) 1859
BpmI CTGGAG 2 cut(s) 437, 1743
BpuMI CCSGG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 607
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 5 cut(s) 207, 508, 1104, 1146, 1752
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 708, 738
Bsc4I CCNNNNNNNGG 4 cut(s) 730, 1110, 1128, 1766
Bse1I ACTGG 5 cut(s) 895, 1018, 1039, 1129, 1824
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 5 cut(s) 207, 508, 1104, 1146, 1752
BseGI GGATG 5 cut(s) 118, 1516, 1653, 1689, 1788
BseLI CCNNNNNNNGG 4 cut(s) 730, 1110, 1128, 1766
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 4 cut(s) 46, 423, 1218, 1677
BseNI ACTGG 5 cut(s) 895, 1018, 1039, 1129, 1824
BseRI GAGGAG 2 cut(s) 665, 896
BseXI GCAGC 2 cut(s) 231, 1291
BsgI GTGCAG 1 cut(s) 1800
BshFI GGCC 6 cut(s) 494, 587, 723, 1017, 1498, 1739
BsiHKAI GWGCWC 1 cut(s) 532
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 2 cut(s) 568, 872
BslFI GGGAC 1 cut(s) 1664
BslI CCNNNNNNNGG 4 cut(s) 730, 1110, 1128, 1766
BsmAI GTCTC 7 cut(s) 163, 422, 428, 701, 814, 1049, 1681
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 1664
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 6 cut(s) 494, 587, 723, 1017, 1498, 1739
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 10, 532
Bsp143I GATC 4 cut(s) 324, 439, 1205, 1456
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 2 cut(s) 13, 1128
BspANI GGCC 6 cut(s) 494, 587, 723, 1017, 1498, 1739
BspCNI CTCAG 4 cut(s) 45, 424, 1219, 1676
BspLI GGNNCC 2 cut(s) 38, 1758
BspPI GGATC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 256
BsrI ACTGG 5 cut(s) 895, 1018, 1039, 1129, 1824
BssECI CCNNGG 5 cut(s) 207, 508, 1104, 1146, 1752
BssMI GATC 4 cut(s) 324, 439, 1205, 1456
BssNI GRCGYC 1 cut(s) 607
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 3 cut(s) 207, 1104, 1752
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 4 cut(s) 806, 951, 1605, 1827
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 607
BstBAI YACGTR 1 cut(s) 719
BstC8I GCNNGC 2 cut(s) 605, 1130
BstDEI CTNAG 5 cut(s) 32, 432, 499, 1227, 1663
BstDSI CCRYGG 1 cut(s) 207
BstENI CCTNNNNNAGG 2 cut(s) 728, 1108
BstF5I GGATG 5 cut(s) 118, 1516, 1653, 1689, 1788
BstKTI GATC 4 cut(s) 327, 442, 1208, 1459
BstMAI GTCTC 7 cut(s) 163, 422, 428, 701, 814, 1049, 1681
BstMBI GATC 4 cut(s) 324, 439, 1205, 1456
BstMWI GCNNNNNNNGC 3 cut(s) 500, 1106, 1313
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 508, 870
BstV1I GCAGC 2 cut(s) 231, 1291
BstV2I GAAGAC 1 cut(s) 1859
BstX2I RGATCY 1 cut(s) 1456
BstXI CCANNNNNNTGG 1 cut(s) 1506
BstYI RGATCY 1 cut(s) 1456
BsuRI GGCC 6 cut(s) 494, 587, 723, 1017, 1498, 1739
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 5 cut(s) 118, 1516, 1653, 1689, 1788
BtsI GCAGTG 1 cut(s) 1866
BtsIMutI CAGTG 4 cut(s) 1122, 1601, 1817, 1866
Cac8I GCNNGC 2 cut(s) 605, 1130
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 586, 1496
CseI GACGC 1 cut(s) 596
Csp6I GTAC 3 cut(s) 716, 784, 802
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 6 cut(s) 107, 186, 208, 410, 524, 1165
CviQI GTAC 3 cut(s) 716, 784, 802
DdeI CTNAG 5 cut(s) 32, 432, 499, 1227, 1663
DpnI GATC 4 cut(s) 326, 441, 1207, 1458
DpnII GATC 4 cut(s) 324, 439, 1205, 1456
DrdI GACNNNNNNGTC 1 cut(s) 1861
DseDI GACNNNNNNGTC 1 cut(s) 1861
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 207, 1104, 1752
Eco147I AGGCCT 1 cut(s) 1739
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 746
EcoNI CCTNNNNNAGG 2 cut(s) 728, 1108
EcoRI GAATTC 1 cut(s) 866
EcoRII CCWGG 1 cut(s) 508
EcoRV GATATC 1 cut(s) 579
EcoT14I CCWWGG 3 cut(s) 207, 1104, 1752
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 3 cut(s) 207, 1104, 1752
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 6 cut(s) 110, 189, 211, 413, 527, 1168
FalI AAGNNNNNCTT 4 cut(s) 460, 492, 482, 514
FaqI GGGAC 1 cut(s) 1664
FatI CATG 6 cut(s) 106, 185, 207, 409, 523, 1164
FauI CCCGC 1 cut(s) 1121
Fnu4HI GCNGC 2 cut(s) 220, 1305
FokI GGATG 5 cut(s) 125, 1523, 1640, 1696, 1795
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 2 cut(s) 220, 1305
FspBI CTAG 4 cut(s) 303, 863, 1110, 1442
GluI GCNGC 2 cut(s) 220, 1305
GsuI CTGGAG 2 cut(s) 437, 1743
HaeIII GGCC 6 cut(s) 494, 587, 723, 1017, 1498, 1739
HapII CCGG 2 cut(s) 568, 872
HgaI GACGC 1 cut(s) 596
Hin1I GRCGYC 1 cut(s) 607
Hin1II CATG 6 cut(s) 110, 189, 211, 413, 527, 1168
HincII GTYRAC 2 cut(s) 798, 1830
HindII GTYRAC 2 cut(s) 798, 1830
HindIII AAGCTT 2 cut(s) 1177, 1314
HinfI GANTC 7 cut(s) 128, 754, 1169, 1189, 1274, 1559, 1770
HpaII CCGG 2 cut(s) 568, 872
HphI GGTGA 2 cut(s) 785, 1700
Hpy166II GTNNAC 3 cut(s) 798, 1608, 1830
Hpy188I TCNGA 8 cut(s) 148, 286, 364, 379, 427, 640, 1666, 1867
Hpy188III TCNNGA 6 cut(s) 34, 320, 533, 746, 748, 1173
Hpy8I GTNNAC 3 cut(s) 798, 1608, 1830
HpyCH4III ACNGT 4 cut(s) 806, 951, 1605, 1827
HpyCH4IV ACGT 2 cut(s) 718, 800
HpyCH4V TGCA 7 cut(s) 242, 689, 891, 1307, 1514, 1570, 1817
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 1106, 1313
HpyF3I CTNAG 5 cut(s) 32, 432, 499, 1227, 1663
HpySE526I ACGT 2 cut(s) 718, 800
Hsp92I GRCGYC 1 cut(s) 607
Hsp92II CATG 6 cut(s) 110, 189, 211, 413, 527, 1168
Kzo9I GATC 4 cut(s) 324, 439, 1205, 1456
LmnI GCTCC 4 cut(s) 85, 652, 1042, 1762
Lsp1109I GCAGC 2 cut(s) 231, 1291
LweI GCATC 1 cut(s) 1501
MaeI CTAG 4 cut(s) 303, 863, 1110, 1442
MaeII ACGT 2 cut(s) 718, 800
MaeIII GTNAC 1 cut(s) 874
MalI GATC 4 cut(s) 326, 441, 1207, 1458
MboI GATC 4 cut(s) 324, 439, 1205, 1456
MflI RGATCY 1 cut(s) 1456
MhlI GDGCHC 2 cut(s) 10, 532
MluCI AATT 9 cut(s) 79, 93, 315, 353, 357, 595, 668, 866, 1623
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 3 cut(s) 627, 1528, 1845
MroXI GAANNNNTTC 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 2 cut(s) 568, 872
MspR9I CCNGG 2 cut(s) 510, 872
Mva1269I GAATGC 1 cut(s) 44
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 3 cut(s) 500, 1106, 1313
NciI CCSGG 1 cut(s) 872
NcoI CCATGG 1 cut(s) 207
NdeII GATC 4 cut(s) 324, 439, 1205, 1456
NlaIII CATG 6 cut(s) 110, 189, 211, 413, 527, 1168
NlaIV GGNNCC 2 cut(s) 38, 1758
NmeAIII GCCGAG 2 cut(s) 678, 1171
NmuCI GTSAC 1 cut(s) 874
NspI RCATGY 1 cut(s) 189
PaeR7I CTCGAG 1 cut(s) 746
PceI AGGCCT 1 cut(s) 1739
PciI ACATGT 1 cut(s) 185
PctI GAATGC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 6 cut(s) 754, 1169, 1189, 1274, 1559, 1770
PflMI CCANNNNNTGG 1 cut(s) 1766
PkrI GCNGC 2 cut(s) 221, 1306
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 719
PscI ACATGT 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 38, 1758
PspPI GGNCC 2 cut(s) 586, 1496
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 1456
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 3 cut(s) 717, 785, 803
RsaNI GTAC 3 cut(s) 716, 784, 802
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 2 cut(s) 220, 1305
Sau3AI GATC 4 cut(s) 324, 439, 1205, 1456
Sau96I GGNCC 2 cut(s) 586, 1496
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 510, 872
SduI GDGCHC 2 cut(s) 10, 532
SfaNI GCATC 1 cut(s) 1501
Sfr274I CTCGAG 1 cut(s) 746
SlaI CTCGAG 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 9 cut(s) 79, 93, 315, 353, 357, 595, 668, 866, 1623
SseBI AGGCCT 1 cut(s) 1739
SsiI CCGC 2 cut(s) 13, 1128
SspI AATATT 2 cut(s) 456, 1637
SspMI CTAG 4 cut(s) 303, 863, 1110, 1442
StuI AGGCCT 1 cut(s) 1739
StyD4I CCNGG 2 cut(s) 508, 870
StyI CCWWGG 3 cut(s) 207, 1104, 1752
TaaI ACNGT 4 cut(s) 806, 951, 1605, 1827
TaiI ACGT 2 cut(s) 721, 803
TaqI TCGA 3 cut(s) 747, 1204, 1311
TaqII GACCGA 1 cut(s) 452
TasI AATT 9 cut(s) 79, 93, 315, 353, 357, 595, 668, 866, 1623
TfiI GAWTC 6 cut(s) 754, 1169, 1189, 1274, 1559, 1770
TscAI CASTG 4 cut(s) 1129, 1608, 1824, 1866
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 2 cut(s) 219, 1304
Tsp45I GTSAC 1 cut(s) 874
TspRI CASTG 4 cut(s) 1129, 1608, 1824, 1866
Van91I CCANNNNNTGG 1 cut(s) 1766
VspI ATTAAT 1 cut(s) 356
XagI CCTNNNNNAGG 2 cut(s) 728, 1108
XapI RAATTY 2 cut(s) 668, 866
XceI RCATGY 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 4 cut(s) 303, 863, 1110, 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.