Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005557.1

Orthogroup ID

OG0006632

Physical Location & Seq

Genomic Coordinates Reverse (-)

19989 .. 21291

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005557.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtgggctcttcgtcgtcgtgtatctcttgctctcaggaagcaagggtttagcattggaacttcccatgcttgttgtgctaatttggagctatcaattacttacatacaagacacgccttctttcctcgagtcccctcaatcagtgtccgatggatatctgccttccaagagattatactacacaacggatgttttgtcaaacttctctatagatagacgcagcctttcttcacaagctggtacaaaaagcagtggggaggaagatgacttggaagatgggttttctgaacttgaaacgccacccactgctgaggcaattcaggtgagcaatacaaacgatgaaaatgaagatgagttaatctctggaccagaagtctctgatgatgaagaagacattgaaccttctcaaaatgagctggagttatcagagacagagagcgatccaaatgagaaaaggtcgccaaggaaaagggatgtttcagcacttttcaaagccatcttagaatttccgggtttatctgttcatagtgctctggataagtgggttaaagaaggaaatgatttaagcagggcagagatctcattggccatgctaaacttacgcagacgtcgaatgtttgggagggcattgcaggtgatttcacatgtttttagatttatgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

222

Amino Acids

24.97

Weight (kDa)

4.71

Isoelectric Point (pI)

66.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15480 AT1G80270 AT1G80270 AT1G80270 AT1G80270 AT1G80270
fragaria_vesca	FvH4_6g25350
malus_domestica	MD12G1096000.v1.1 MD14G1090300.v1.1
prunus_persica	Prupe.7G034000_v2.0.a1 Prupe.7G034000_v2.0.a1
pyrus_communis	pycom12g08300 pycom14g08090
rosa_chinensis	RchiOBHm_Chr2g0125771
rosa_laevigata	RLG00000018879
rosa_multiflora	Rmu_sc0005557.1_g000002 Rmu_sc0026259.1_g000001 Rmu_sc0026260.1_g000001 Rmu_ssc0000055.1_g000010
rosa_roxburghii	Rroxscaffold_2G00117730
rosa_rugosa	Rorug02G0259300
rosa_samantha	Rh2AG317300 Rh2BG325300 Rh2CG307100 Rh2DG343300
rosa_wichuraiana	Rw2G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
AatII	GACGTC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	625
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	610
AfaI	GTAC	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	3 cut(s)	296, 401, 493
AhdI	GACNNNNNGTC	1 cut(s)	374
AluBI	AGCT	3 cut(s)	91, 239, 418
AluI	AGCT	3 cut(s)	91, 239, 418
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	382, 425
AlwI	GGATC	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	337, 649
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	535
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	3 cut(s)	146, 272, 506
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	382, 425
BfmI	CTRYAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	625
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	368
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	629
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	2 cut(s)	196, 481
BseJI	GATNNNNATC	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	2 cut(s)	49, 303
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	382, 425
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	590
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	10, 535
Bsp143I	GATC	2 cut(s)	442, 579
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	2 cut(s)	48, 304
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	1 cut(s)	437
BspQI	GCTCTTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	629
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	2 cut(s)	442, 579
BssNI	GRCGYC	1 cut(s)	610
BssT1I	CCWWGG	1 cut(s)	464
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	35, 312, 502
BstF5I	GGATG	2 cut(s)	196, 481
BstKTI	GATC	2 cut(s)	445, 582
BstMAI	GTCTC	2 cut(s)	382, 425
BstMBI	GATC	2 cut(s)	442, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	196, 481
BtsI	GCAGTG	2 cut(s)	259, 306
BtsIMutI	CAGTG	3 cut(s)	150, 259, 306
BveI	ACCTGC	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	68, 592, 647
CviJI	RGCY	7 cut(s)	8, 91, 225, 239, 418, 497, 590
CviKI_1	RGCY	7 cut(s)	8, 91, 225, 239, 418, 497, 590
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	3 cut(s)	35, 312, 502
DpnI	GATC	2 cut(s)	444, 581
DpnII	GATC	2 cut(s)	442, 579
DriI	GACNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	3 cut(s)	71, 595, 650
FaiI	YATR	8 cut(s)	69, 107, 178, 212, 528, 593, 648, 662
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	67, 591, 646
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	2 cut(s)	203, 488
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	610
Hin1II	CATG	3 cut(s)	71, 595, 650
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	2 cut(s)	337, 649
Hpy188I	TCNGA	4 cut(s)	151, 289, 382, 430
Hpy188III	TCNNGA	3 cut(s)	37, 366, 536
Hpy99I	CGWCG	3 cut(s)	18, 21, 615
HpyAV	CCTTC	4 cut(s)	129, 174, 414, 548
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	1 cut(s)	634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	35, 312, 502
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	610
Hsp92II	CATG	3 cut(s)	71, 595, 650
Kzo9I	GATC	2 cut(s)	442, 579
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	610
MalI	GATC	2 cut(s)	444, 581
MboI	GATC	2 cut(s)	442, 579
MboII	GAAGA	6 cut(s)	222, 275, 287, 362, 401, 404
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	2 cut(s)	10, 535
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	4 cut(s)	82, 96, 318, 506
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	5 cut(s)	137, 147, 253, 307, 618
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	3 cut(s)	359, 549, 566
Msp20I	TGGCCA	1 cut(s)	590
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	2 cut(s)	442, 579
NlaIII	CATG	3 cut(s)	71, 595, 650
NspI	RCATGY	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	625
PciI	ACATGT	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PscI	ACATGT	1 cut(s)	646
PspPI	GGNCC	1 cut(s)	368
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	579
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	359, 549, 566
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	2 cut(s)	442, 579
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	10, 535
SetI	ASST	8 cut(s)	93, 241, 327, 406, 420, 461, 613, 639
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	82, 96, 318, 506
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	464
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	2 cut(s)	129, 613
TasI	AATT	4 cut(s)	82, 96, 318, 506
Tru1I	TTAA	3 cut(s)	359, 549, 566
Tru9I	TTAA	3 cut(s)	359, 549, 566
TscAI	CASTG	3 cut(s)	150, 259, 313
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	4 cut(s)	357, 363, 402, 515
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	150, 259, 313
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	1 cut(s)	650
XhoI	CTCGAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.