AT1G80390

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010951
Physical Location & Seq
Reverse (-)
30221629 .. 30222769
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80390.1

Sequence Viewer

Length: 390 bp
ATGTCACCGGAGGAATACGTTAGGGTTTGGCCGGATTCCGGTGATCTTGGAGGAACTGAGCTGACCCTAGCTTTGCCTGGCACTCCGACAAATGCATCGGAAGGTCCAAAAAAGTTCGGGAACAAACGTAGATTCCTCGAGACCGTTGATTTAAAACTCGGGGAAGCACACGAGAACAATTATATCTCAAGCATGGTCACTAATGACCAGTTGGTGGGCTGGCCGCCGGTAGCGACAGCGAGGAAAACAGTGAGGCGGAAATACGTGAAAGTGGCGTTGGATGGTGCGGCCTATCTCAGAAAGGTTGATCTTGGGATGTACGATTGCTATGGACAGCTTTTCACCGCTCTAGAAAACATGTTTCAGGGGATAATAACAATATGTAAGTGA

Protein Analysis

129

Amino Acids

14.35

Weight (kDa)

7.73

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 85 - 126 5.3e-13 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80390
fragaria_vesca FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis pycom09g13300 pycom17g20310
rosa_chinensis RchiOBHm_Chr2g0137301
rosa_laevigata RLG00000019649
rosa_multiflora Rmu_sc0019961.1_g000004
rosa_roxburghii Rroxscaffold_2G00107220
rosa_rugosa Rorug02G0340900
rosa_samantha Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana Rw2G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 347
AciI CCGC 4 cut(s) 224, 256, 287, 345
AcoI YGGCCR 2 cut(s) 29, 221
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 38, 214
AflIII ACRYGT 1 cut(s) 357
AjnI CCWGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 61, 71, 337
AluI AGCT 3 cut(s) 61, 71, 337
Alw26I GTCTC 1 cut(s) 134
Ama87I CYCGRG 2 cut(s) 137, 158
AoxI GGCC 3 cut(s) 29, 221, 288
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 53, 334
AvaI CYCGRG 2 cut(s) 137, 158
AvaII GGWCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 170
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 68, 350
BisI GCNGC 2 cut(s) 224, 288
BlsI GCNGC 2 cut(s) 225, 289
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 2 cut(s) 137, 158
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 134
BsaWI WCCGGW 2 cut(s) 7, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 214
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 286, 321
BseLI CCNNNNNNNGG 2 cut(s) 38, 214
BseMII CTCAG 2 cut(s) 48, 310
BseNI ACTGG 1 cut(s) 208
BshFI GGCC 3 cut(s) 31, 223, 290
BsiHKCI CYCGRG 2 cut(s) 137, 158
BsiSI CCGG 4 cut(s) 8, 32, 39, 227
BslI CCNNNNNNNGG 2 cut(s) 38, 214
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 3 cut(s) 31, 223, 290
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 2 cut(s) 137, 158
Bsp143I GATC 2 cut(s) 43, 307
BspACI CCGC 4 cut(s) 224, 256, 287, 345
BspANI GGCC 3 cut(s) 31, 223, 290
BspCNI CTCAG 2 cut(s) 49, 309
BspTNI GGTCTC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 2 cut(s) 43, 307
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 145, 250
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 57, 296
BstF5I GGATG 2 cut(s) 286, 321
BstKTI GATC 2 cut(s) 46, 310
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 43, 307
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 76
BsuRI GGCC 3 cut(s) 31, 223, 290
BtsCI GGATG 2 cut(s) 286, 321
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 193, 358
CviJI RGCY 7 cut(s) 31, 61, 71, 219, 223, 290, 337
CviKI_1 RGCY 7 cut(s) 31, 61, 71, 219, 223, 290, 337
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 57, 296
DpnI GATC 2 cut(s) 45, 309
DpnII GATC 2 cut(s) 43, 307
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 2 cut(s) 29, 221
EciI GGCGGA 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 2 cut(s) 137, 158
EcoRII CCWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 2 cut(s) 196, 361
FaiI YATR 5 cut(s) 183, 194, 330, 359, 382
FatI CATG 2 cut(s) 192, 357
Fnu4HI GCNGC 2 cut(s) 224, 288
FokI GGATG 2 cut(s) 293, 328
Fsp4HI GCNGC 2 cut(s) 224, 288
FspBI CTAG 2 cut(s) 68, 350
GluI GCNGC 2 cut(s) 224, 288
HaeIII GGCC 3 cut(s) 31, 223, 290
HapII CCGG 4 cut(s) 8, 32, 39, 227
Hin1II CATG 2 cut(s) 196, 361
HinfI GANTC 2 cut(s) 35, 132
HpaII CCGG 4 cut(s) 8, 32, 39, 227
HphI GGTGA 2 cut(s) 53, 334
Hpy188I TCNGA 3 cut(s) 87, 100, 299
Hpy188III TCNNGA 3 cut(s) 118, 139, 350
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 145, 250
HpyCH4IV ACGT 3 cut(s) 18, 127, 264
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 57, 296
HpySE526I ACGT 3 cut(s) 18, 127, 264
Hsp92II CATG 2 cut(s) 196, 361
Kzo9I GATC 2 cut(s) 43, 307
LpnPI CCDG 9 cut(s) 21, 45, 52, 63, 90, 205, 221, 240, 350
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 68, 350
MaeII ACGT 3 cut(s) 18, 127, 264
MaeIII GTNAC 2 cut(s) 3, 196
MalI GATC 2 cut(s) 45, 309
MbiI CCGCTC 1 cut(s) 347
MboI GATC 2 cut(s) 43, 307
MluCI AATT 1 cut(s) 178
MmeI TCCRAC 2 cut(s) 110, 258
MnlI CCTC 5 cut(s) 4, 44, 146, 234, 246
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 152
MspI CCGG 4 cut(s) 8, 32, 39, 227
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NdeII GATC 2 cut(s) 43, 307
NlaIII CATG 2 cut(s) 196, 361
NmuCI GTSAC 2 cut(s) 3, 196
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 361
PaeR7I CTCGAG 1 cut(s) 137
PciI ACATGT 1 cut(s) 357
PfeI GAWTC 2 cut(s) 35, 132
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 225, 289
Ppu21I YACGTR 1 cut(s) 265
PscI ACATGT 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 1 cut(s) 104
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 224, 288
Sau3AI GATC 2 cut(s) 43, 307
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 78
SetI ASST 8 cut(s) 21, 63, 73, 106, 130, 267, 306, 339
SfaNI GCATC 1 cut(s) 104
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 137, 187
SmoI CTYRAG 2 cut(s) 137, 187
Sse9I AATT 1 cut(s) 178
SsiI CCGC 4 cut(s) 224, 256, 287, 345
SspMI CTAG 2 cut(s) 68, 350
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 145, 250
TaiI ACGT 3 cut(s) 21, 130, 267
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 178
TauI GCSGC 2 cut(s) 226, 290
TfiI GAWTC 2 cut(s) 35, 132
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 2 cut(s) 3, 196
Tsp45I GTSAC 2 cut(s) 3, 196
TspRI CASTG 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 104
XbaI TCTAGA 1 cut(s) 349
XceI RCATGY 1 cut(s) 361
XhoI CTCGAG 1 cut(s) 137
XspI CTAG 2 cut(s) 68, 350
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.