FvH4_6g30850

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010951
Physical Location & Seq
Reverse (-)
23999123 .. 24000455
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30850.t4

Sequence Viewer

Length: 594 bp
ATGTCACCGGAAAATGAGCAACACTCGCCGGCCGGATTAAACTACGACGAGACGAAGCTGACCCTGGGATTGCCTGGCTCAGGTTCTAAACGTGTCTTCTCCGAGACCGCCACCACCGTCGATCTCAATCTTGGGAGCTCATGCTCGTCGTCAACTACTACTGTTGATGATGAGGTCAAGACTCAAAAACCTACAGCCAAGGCACAAGTGGTGGGGTGGCCGCCTGTGAGAGGGTCTAGGAGGAACTTGATGAAGAGCTGCAAGTATGTTAAGGTTGCTGTGGATGGAGCTCCTTACTTGCGCAAAATGGATCTTGAGATGTGCAAAAGCTATCAGCAGCTTTTGGGTGCTCTAGAGGATTTGTTCTCCTTCTTGACCATTCGTAAGGATATGAATGAGAGAAAGCTTATGGACCTTGCTAATGGAGTGGAATATGTACCTACTTATGAGGACAGAGATGGGGATTGGATGCTTGTTGGAGATGTACCATGGAATATGTTTGTGGAGTCATGCAAGCGCCTAAGGTTGATGAAAAGCTCAGAGGCGATTGGATTAGCTCCGAGAACACCTCCAAAATGCACAAGCAGCAGCTGA

Protein Analysis

198

Amino Acids

21.85

Weight (kDa)

7.56

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 14 - 165 8.9e-43 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80390
fragaria_vesca FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis pycom09g13300 pycom17g20310
rosa_chinensis RchiOBHm_Chr2g0137301
rosa_laevigata RLG00000019649
rosa_multiflora Rmu_sc0019961.1_g000004
rosa_roxburghii Rroxscaffold_2G00107220
rosa_rugosa Rorug02G0340900
rosa_samantha Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana Rw2G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 302
AciI CCGC 2 cut(s) 108, 221
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 2 cut(s) 30, 218
AfaI GTAC 2 cut(s) 438, 486
AfiI CCNNNNNNNGG 2 cut(s) 80, 230
AflIII ACRYGT 1 cut(s) 91
AjnI CCWGG 2 cut(s) 63, 73
Alw21I GWGCWC 3 cut(s) 140, 292, 352
Alw26I GTCTC 2 cut(s) 44, 98
AlwI GGATC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 591
AoxI GGCC 2 cut(s) 30, 218
ApeKI GCWGC 4 cut(s) 258, 337, 585, 588
AspLEI GCGC 2 cut(s) 303, 519
AspS9I GGNCC 1 cut(s) 412
AvaII GGWCC 1 cut(s) 412
AxyI CCTNAGG 1 cut(s) 521
BanII GRGCYC 2 cut(s) 140, 292
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 3 cut(s) 140, 292, 352
BbvI GCAGC 2 cut(s) 245, 349
BccI CCATC 2 cut(s) 278, 452
BciT130I CCWGG 2 cut(s) 65, 75
BcoDI GTCTC 2 cut(s) 44, 98
BfaI CTAG 2 cut(s) 237, 353
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 520
BisI GCNGC 5 cut(s) 221, 259, 338, 586, 589
BlsI GCNGC 5 cut(s) 222, 260, 339, 587, 590
Bme1390I CCNGG 2 cut(s) 65, 75
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 412
BmrFI CCNGG 2 cut(s) 65, 75
BmsI GCATC 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 88
BplI GAGNNNNNCTC 4 cut(s) 8, 40, 553, 585
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 4 cut(s) 63, 64, 198, 488
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 230
Bse118I RCCGGY 1 cut(s) 28
Bse21I CCTNAGG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 65, 75
BseDI CCNNGG 4 cut(s) 63, 64, 198, 488
BseGI GGATG 2 cut(s) 289, 474
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 80, 230
BseMII CTCAG 2 cut(s) 93, 552
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 245, 349
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 32, 220
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 3 cut(s) 140, 292, 352
BsiSI CCGG 3 cut(s) 8, 29, 33
BslI CCNNNNNNNGG 2 cut(s) 80, 230
BsmAI GTCTC 2 cut(s) 44, 98
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 2 cut(s) 32, 220
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 3 cut(s) 140, 292, 352
Bsp143I GATC 2 cut(s) 121, 310
Bsp19I CCATGG 1 cut(s) 488
BspACI CCGC 2 cut(s) 108, 221
BspANI GGCC 2 cut(s) 32, 220
BspCNI CTCAG 2 cut(s) 92, 551
BspPI GGATC 1 cut(s) 318
BspQI GCTCTTC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 63, 64, 198, 488
BssMI GATC 2 cut(s) 121, 310
BssT1I CCWWGG 2 cut(s) 198, 488
Bst2UI CCWGG 2 cut(s) 65, 75
Bst4CI ACNGT 2 cut(s) 118, 163
Bst6I CTCTTC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 30, 515
BstDEI CTNAG 3 cut(s) 79, 521, 538
BstDSI CCRYGG 1 cut(s) 488
BstENI CCTNNNNNAGG 2 cut(s) 78, 228
BstF5I GGATG 2 cut(s) 289, 474
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 303, 519
BstKTI GATC 2 cut(s) 124, 313
BstMAI GTCTC 2 cut(s) 44, 98
BstMBI GATC 2 cut(s) 121, 310
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 25, 585
BstNI CCWGG 2 cut(s) 65, 75
BstSCI CCNGG 2 cut(s) 63, 73
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 245, 349
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZI CGGCCG 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 521
BsuRI GGCC 2 cut(s) 32, 220
BtgI CCRYGG 1 cut(s) 488
BtsCI GGATG 2 cut(s) 289, 474
Cac8I GCNNGC 2 cut(s) 30, 515
CaiI CAGNNNCTG 1 cut(s) 591
CfoI GCGC 2 cut(s) 303, 519
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 437, 485
CviAII CATG 3 cut(s) 141, 489, 510
CviQI GTAC 2 cut(s) 437, 485
DdeI CTNAG 3 cut(s) 79, 521, 538
DpnI GATC 2 cut(s) 123, 312
DpnII GATC 2 cut(s) 121, 310
EaeI YGGCCR 2 cut(s) 30, 218
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 138, 290
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 198, 488
Eco24I GRGCYC 2 cut(s) 140, 292
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 412
Eco52I CGGCCG 1 cut(s) 30
Eco53kI GAGCTC 2 cut(s) 138, 290
Eco81I CCTNAGG 1 cut(s) 521
EcoICRI GAGCTC 2 cut(s) 138, 290
EcoNI CCTNNNNNAGG 2 cut(s) 78, 228
EcoRII CCWGG 2 cut(s) 63, 73
EcoT14I CCWWGG 2 cut(s) 198, 488
EcoT38I GRGCYC 2 cut(s) 140, 292
ErhI CCWWGG 2 cut(s) 198, 488
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 3 cut(s) 144, 492, 513
FaiI YATR 9 cut(s) 142, 267, 392, 410, 435, 447, 490, 497, 511
FatI CATG 3 cut(s) 140, 488, 509
Fnu4HI GCNGC 5 cut(s) 221, 259, 338, 586, 589
FokI GGATG 2 cut(s) 296, 481
FriOI GRGCYC 2 cut(s) 140, 292
Fsp4HI GCNGC 5 cut(s) 221, 259, 338, 586, 589
FspBI CTAG 2 cut(s) 237, 353
FspI TGCGCA 1 cut(s) 302
GlaI GCGC 2 cut(s) 302, 518
GluI GCNGC 5 cut(s) 221, 259, 338, 586, 589
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 2 cut(s) 32, 220
HapII CCGG 3 cut(s) 8, 29, 33
HhaI GCGC 2 cut(s) 303, 519
Hin1II CATG 3 cut(s) 144, 492, 513
Hin6I GCGC 2 cut(s) 301, 517
HinP1I GCGC 2 cut(s) 301, 517
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 181, 506
HpaII CCGG 3 cut(s) 8, 29, 33
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 3 cut(s) 103, 541, 561
Hpy188III TCNNGA 4 cut(s) 178, 314, 353, 373
Hpy8I GTNNAC 1 cut(s) 153
Hpy99I CGWCG 3 cut(s) 50, 122, 151
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 118, 163
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 261, 324, 513, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 585
HpyF3I CTNAG 3 cut(s) 79, 521, 538
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 144, 492, 513
HspAI GCGC 2 cut(s) 301, 517
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 121, 310
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 4 cut(s) 135, 287, 295, 562
LpnPI CCDG 9 cut(s) 21, 42, 46, 50, 60, 66, 77, 87, 237
Lsp1109I GCAGC 2 cut(s) 245, 349
LweI GCATC 1 cut(s) 459
MaeI CTAG 2 cut(s) 237, 353
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 123, 312
MboI GATC 2 cut(s) 121, 310
MboII GAAGA 2 cut(s) 88, 265
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 3 cut(s) 140, 292, 352
MlyI GAGTC 2 cut(s) 175, 515
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 7 cut(s) 166, 224, 234, 349, 442, 535, 579
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 2 cut(s) 38, 270
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 3 cut(s) 8, 29, 33
MspR9I CCNGG 2 cut(s) 65, 75
MvaI CCWGG 2 cut(s) 65, 75
MwoI GCNNNNNNNGC 2 cut(s) 25, 585
NaeI GCCGGC 1 cut(s) 30
NcoI CCATGG 1 cut(s) 488
NdeII GATC 2 cut(s) 121, 310
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 144, 492, 513
NmuCI GTSAC 1 cut(s) 3
NsbI TGCGCA 1 cut(s) 302
PasI CCCWGGG 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 248
PdiI GCCGGC 1 cut(s) 30
PkrI GCNGC 5 cut(s) 222, 260, 339, 587, 590
PleI GAGTC 2 cut(s) 175, 514
PpsI GAGTC 2 cut(s) 175, 514
Psp124BI GAGCTC 2 cut(s) 140, 292
Psp6I CCWGG 2 cut(s) 63, 73
PspGI CCWGG 2 cut(s) 63, 73
PspPI GGNCC 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 591
PsuI RGATCY 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 591
RsaI GTAC 2 cut(s) 438, 486
RsaNI GTAC 2 cut(s) 437, 485
SacI GAGCTC 2 cut(s) 140, 292
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 38, 270
SatI GCNGC 5 cut(s) 221, 259, 338, 586, 589
Sau3AI GATC 2 cut(s) 121, 310
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 2 cut(s) 175, 515
ScrFI CCNGG 2 cut(s) 65, 75
SduI GDGCHC 3 cut(s) 140, 292, 352
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 412
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SsiI CCGC 2 cut(s) 108, 221
SspMI CTAG 2 cut(s) 237, 353
SstI GAGCTC 2 cut(s) 140, 292
StyD4I CCNGG 2 cut(s) 63, 73
StyI CCWWGG 2 cut(s) 198, 488
TaaI ACNGT 2 cut(s) 118, 163
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 120
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 38, 270
Tru9I TTAA 2 cut(s) 38, 270
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 258, 337, 585, 588
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 266, 407, 545
VpaK11BI GGWCC 1 cut(s) 412
XagI CCTNNNNNAGG 2 cut(s) 78, 228
XbaI TCTAGA 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 2 cut(s) 237, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.