Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010951

Physical Location & Seq

Genomic Coordinates Forward (+)

23886616 .. 23888516

Gene Structure 1901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1198300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCACCGGAAGTTAAGCAGCAGTCGCCGGCCGGACTGAACTACGACGAGACCAAGCTGACCTTAGGGTTGCCAGGTTCGGGCTCGAAACGTGGATTTTCAGAGACCGTTGATCTTAGTCTTGGGAGCTCAAGCTCATCATCGTCAGGAGCAAGGGTGGAATGTTGTGATCAAGGTTGTGTTGATGATGGTGGGATCACTACTCATAAGGCTCCAGCTGCAAAGGCACAAGTGGTTGGTTGGCCACCGGTCAGAGTTTCAAGGAAGAACTTGATGAAGAGCTGCAAGTATGTGAAAGTGGCAGTTGATGGAGCTCCATATCTGCGCAAGGTTGATCTTGAGATGTACAATAGCTATCAGCAGCTTTTGGGTGCTCTTGAGGACATGTTTTCCTTCTTAACCATCCGTAATTGCTTAAATGAGAGCAAGCTTATGGACCCTGCAAATGGAGTGGAATATGTACCAACTTATGAAGACAGAGATGGGGACTGGATGCTGGTGGGAGATGTACCATGGAAAATGTTCGTGGAAACATGCAAGCGACTCCGATTGATGAAAAGCTCGGAGGCGATCGGATTAGCTCCGAGCACGCCTCCGCGATGCAGAAGCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0140110 GO:1900055 GO:1900057 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

206

Amino Acids

22.4

Weight (kDa)

7.5

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	19 - 94	1.7e-10	AUX/IAA family
AUX_IAA	PF02309	94 - 195	4.2e-50	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80390
fragaria_vesca	FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica	MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica	Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis	pycom09g13300 pycom17g20310
rosa_chinensis	RchiOBHm_Chr2g0137301
rosa_laevigata	RLG00000019649
rosa_multiflora	Rmu_sc0019961.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107220
rosa_rugosa	Rorug02G0340900
rosa_samantha	Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana	Rw2G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	326
AccII	CGCG	1 cut(s)	598
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	2 cut(s)	30, 242
AfaI	GTAC	3 cut(s)	347, 462, 510
AfiI	CCNNNNNNNGG	2 cut(s)	80, 446
AflIII	ACRYGT	1 cut(s)	384
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	73
Alw21I	GWGCWC	4 cut(s)	131, 316, 376, 590
Alw26I	GTCTC	2 cut(s)	44, 98
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	2 cut(s)	30, 242
ApeKI	GCWGC	4 cut(s)	19, 218, 282, 361
AsiGI	ACCGGT	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	244
BanII	GRGCYC	3 cut(s)	86, 131, 316
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	4 cut(s)	131, 316, 376, 590
BbvI	GCAGC	4 cut(s)	31, 205, 269, 373
BccI	CCATC	4 cut(s)	182, 302, 410, 476
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	44, 98
BisI	GCNGC	4 cut(s)	20, 219, 283, 362
BlsI	GCNGC	4 cut(s)	21, 220, 284, 363
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	213, 438
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	483, 590
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	3 cut(s)	115, 359, 398
BsaI	GGTCTC	2 cut(s)	44, 98
BsaJI	CCNNGG	1 cut(s)	512
BsaWI	WCCGGW	2 cut(s)	7, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 446
Bse118I	RCCGGY	2 cut(s)	28, 247
Bse1I	ACTGG	1 cut(s)	494
Bse21I	CCTNAGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	2 cut(s)	402, 498
BseLI	CCNNNNNNNGG	2 cut(s)	80, 446
BseNI	ACTGG	1 cut(s)	494
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	4 cut(s)	31, 205, 269, 373
Bsh1236I	CGCG	1 cut(s)	598
Bsh1285I	CGRYCG	2 cut(s)	33, 573
BshFI	GGCC	2 cut(s)	32, 244
BshTI	ACCGGT	1 cut(s)	247
BsiEI	CGRYCG	2 cut(s)	33, 573
BsiHKAI	GWGCWC	4 cut(s)	131, 316, 376, 590
BsiSI	CCGG	4 cut(s)	8, 29, 33, 248
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	80, 446
BsmAI	GTCTC	2 cut(s)	44, 98
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	32, 244
Bso31I	GGTCTC	2 cut(s)	44, 98
Bsp1286I	GDGCHC	5 cut(s)	86, 131, 316, 376, 590
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	112, 169, 195, 334, 570
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	2 cut(s)	32, 244
BspFNI	CGCG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	213, 438
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	272
BspTNI	GGTCTC	2 cut(s)	44, 98
BsrFI	RCCGGY	2 cut(s)	28, 247
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	2 cut(s)	28, 247
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	5 cut(s)	112, 169, 195, 334, 570
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	4 cut(s)	30, 428, 539, 590
BstDEI	CTNAG	2 cut(s)	64, 116
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	402, 498
BstFNI	CGCG	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	5 cut(s)	115, 172, 198, 337, 573
BstMAI	GTCTC	2 cut(s)	44, 98
BstMBI	GATC	5 cut(s)	112, 169, 195, 334, 570
BstMCI	CGRYCG	2 cut(s)	33, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 218, 224
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	388, 537
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	598
BstV1I	GCAGC	4 cut(s)	31, 205, 269, 373
BstV2I	GAAGAC	1 cut(s)	480
BstZI	CGGCCG	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	32, 244
BtgI	CCRYGG	1 cut(s)	512
BtgZI	GCGATG	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	402, 498
Cac8I	GCNNGC	4 cut(s)	30, 428, 539, 590
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	28, 247
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	3 cut(s)	346, 461, 509
CspAI	ACCGGT	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	3 cut(s)	385, 513, 534
CviQI	GTAC	3 cut(s)	346, 461, 509
DdeI	CTNAG	2 cut(s)	64, 116
DpnI	GATC	5 cut(s)	114, 171, 197, 336, 572
DpnII	GATC	5 cut(s)	112, 169, 195, 334, 570
EaeI	YGGCCR	2 cut(s)	30, 242
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	2 cut(s)	129, 314
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	3 cut(s)	86, 131, 316
Eco31I	GGTCTC	2 cut(s)	44, 98
Eco47I	GGWCC	1 cut(s)	436
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	2 cut(s)	129, 314
Eco81I	CCTNAGG	1 cut(s)	64
EcoICRI	GAGCTC	2 cut(s)	129, 314
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	3 cut(s)	86, 131, 316
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	3 cut(s)	388, 516, 537
FaiI	YATR	9 cut(s)	207, 291, 319, 386, 434, 459, 471, 514, 535
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	3 cut(s)	384, 512, 533
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	20, 219, 283, 362
FokI	GGATG	2 cut(s)	389, 505
FriOI	GRGCYC	3 cut(s)	86, 131, 316
Fsp4HI	GCNGC	4 cut(s)	20, 219, 283, 362
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	4 cut(s)	20, 219, 283, 362
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	32, 244
HapII	CCGG	4 cut(s)	8, 29, 33, 248
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	388, 516, 537
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	543
HpaII	CCGG	4 cut(s)	8, 29, 33, 248
Hpy188I	TCNGA	6 cut(s)	103, 254, 548, 565, 575, 585
Hpy188III	TCNNGA	3 cut(s)	147, 338, 377
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	221, 285, 443, 537, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 218, 224
HpyF3I	CTNAG	2 cut(s)	64, 116
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	388, 516, 537
HspAI	GCGC	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	112, 169, 195, 334, 570
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	6 cut(s)	126, 149, 217, 311, 319, 586
Lsp1109I	GCAGC	4 cut(s)	31, 205, 269, 373
LweI	GCATC	2 cut(s)	483, 590
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	5 cut(s)	114, 171, 197, 336, 572
MboI	GATC	5 cut(s)	112, 169, 195, 334, 570
MboII	GAAGA	3 cut(s)	277, 289, 485
MhlI	GDGCHC	5 cut(s)	86, 131, 316, 376, 590
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	2 cut(s)	409, 613
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	537
MnlI	CCTC	3 cut(s)	373, 559, 603
Mox20I	TGGCCA	1 cut(s)	244
MroNI	GCCGGC	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	3 cut(s)	15, 398, 416
Msp20I	TGGCCA	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	4 cut(s)	8, 29, 33, 248
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	3 cut(s)	25, 218, 224
NaeI	GCCGGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	5 cut(s)	112, 169, 195, 334, 570
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	3 cut(s)	388, 516, 537
NlaIV	GGNNCC	2 cut(s)	213, 438
NmuCI	GTSAC	1 cut(s)	3
NsbI	TGCGCA	1 cut(s)	326
NspI	RCATGY	2 cut(s)	388, 537
PciI	ACATGT	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	272
PdiI	GCCGGC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	521
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	21, 220, 284, 363
Ple19I	CGATCG	1 cut(s)	573
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	2 cut(s)	131, 316
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	213, 438
PspPI	GGNCC	1 cut(s)	436
PvuI	CGATCG	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	3 cut(s)	347, 462, 510
RsaNI	GTAC	3 cut(s)	346, 461, 509
SacI	GAGCTC	2 cut(s)	131, 316
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	15, 398, 416
SatI	GCNGC	4 cut(s)	20, 219, 283, 362
Sau3AI	GATC	5 cut(s)	112, 169, 195, 334, 570
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	537
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	5 cut(s)	86, 131, 316, 376, 590
SfaNI	GCATC	2 cut(s)	483, 590
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	3 cut(s)	130, 338, 377
SmoI	CTYRAG	3 cut(s)	130, 338, 377
Sse9I	AATT	2 cut(s)	409, 613
SsiI	CCGC	1 cut(s)	596
SstI	GAGCTC	2 cut(s)	131, 316
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	409, 613
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	3 cut(s)	15, 398, 416
Tru9I	TTAA	3 cut(s)	15, 398, 416
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	4 cut(s)	19, 218, 282, 361
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	290, 486, 569
TspGWI	ACGGA	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	436
XceI	RCATGY	2 cut(s)	388, 537
XmnI	GAANNNNTTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.