Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010951

Physical Location & Seq

Genomic Coordinates Reverse (-)

52346808 .. 52348215

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCACCGGAAAATGAGCAACAGTCGCCGGCCGGATTAAACTACGACGAGACGAAGCTGACCCTGGGATTGCCTGGCTCTGGCTCTAAACGTGGCTTCTCCGAGACCGCCGTCGTCGGTCTCAATCTTGGGAGTTCATGCTCGTCGTCAACAACTGTTGATGATGAGGTGAAAACTCATAGACCTCCAGCCAAGGCACAAGTGGTGGGGTGGCCGCCTGTGAGAGGGTCTAGGAGGAACTTGATGACGAGCTGCAAGTATGTGAAGGTTGCAGTAGATGGAGCTCCGTACTTGCGCAAAATGGATCTTGAGACGTGCAAGAGCTATCAGCAGCTTTTGGGGGCTCTAGAGGATTTGTTCTCCTTCTTGACCATCCGTAATGATACGAATGAGAGAAAGCTTATGGACCTTGCTAATGGAGTGGAATATGTACCTACTTATGAGGACAGAGATGGAGATTGGATGCTTGTTGGAGATGTACCATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0140110 GO:1900055 GO:1900057 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

163

Amino Acids

17.99

Weight (kDa)

5.23

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	14 - 163	9.1e-42	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80390
fragaria_vesca	FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica	MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica	Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis	pycom09g13300 pycom17g20310
rosa_chinensis	RchiOBHm_Chr2g0137301
rosa_laevigata	RLG00000019649
rosa_multiflora	Rmu_sc0019961.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107220
rosa_rugosa	Rorug02G0340900
rosa_samantha	Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana	Rw2G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	296
AciI	CCGC	2 cut(s)	108, 215
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	2 cut(s)	30, 212
AfaI	GTAC	3 cut(s)	290, 432, 480
AfiI	CCNNNNNNNGG	2 cut(s)	80, 224
AjiI	CACGTC	1 cut(s)	315
AjnI	CCWGG	2 cut(s)	63, 73
AluBI	AGCT	6 cut(s)	58, 252, 284, 324, 334, 400
AluI	AGCT	6 cut(s)	58, 252, 284, 324, 334, 400
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	4 cut(s)	44, 98, 125, 305
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	2 cut(s)	30, 212
ApeKI	GCWGC	2 cut(s)	252, 331
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	406
BanII	GRGCYC	2 cut(s)	286, 346
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	239, 343
BccI	CCATC	3 cut(s)	272, 380, 446
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	65, 75
BcoDI	GTCTC	4 cut(s)	44, 98, 125, 305
BfaI	CTAG	2 cut(s)	231, 347
BisI	GCNGC	3 cut(s)	215, 253, 332
BlsI	GCNGC	3 cut(s)	216, 254, 333
Bme1390I	CCNGG	2 cut(s)	65, 75
Bme18I	GGWCC	1 cut(s)	406
BmgBI	CACGTC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	65, 75
BmsI	GCATC	1 cut(s)	453
BoxI	GACNNNNGTC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	329
BsaI	GGTCTC	2 cut(s)	98, 125
BsaJI	CCNNGG	4 cut(s)	63, 64, 192, 482
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 224
Bse118I	RCCGGY	1 cut(s)	28
BseBI	CCWGG	2 cut(s)	65, 75
BseDI	CCNNGG	4 cut(s)	63, 64, 192, 482
BseGI	GGATG	2 cut(s)	372, 468
BseLI	CCNNNNNNNGG	2 cut(s)	80, 224
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	239, 343
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	32, 214
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	3 cut(s)	8, 29, 33
BslI	CCNNNNNNNGG	2 cut(s)	80, 224
BsmAI	GTCTC	4 cut(s)	44, 98, 125, 305
BsmBI	CGTCTC	2 cut(s)	44, 305
BsnI	GGCC	2 cut(s)	32, 214
Bso31I	GGTCTC	2 cut(s)	98, 125
Bsp1286I	GDGCHC	2 cut(s)	286, 346
Bsp143I	GATC	1 cut(s)	304
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	2 cut(s)	108, 215
BspANI	GGCC	2 cut(s)	32, 214
BspPI	GGATC	1 cut(s)	312
BspTNI	GGTCTC	2 cut(s)	98, 125
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	63, 64, 192, 482
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	2 cut(s)	192, 482
Bst2UI	CCWGG	2 cut(s)	65, 75
Bst4CI	ACNGT	2 cut(s)	24, 157
BstC8I	GCNNGC	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	482
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	372, 468
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	4 cut(s)	44, 98, 125, 305
BstMBI	GATC	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	65, 75
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	63, 73
BstV1I	GCAGC	2 cut(s)	239, 343
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	32, 214
BtgI	CCRYGG	1 cut(s)	482
BtrI	CACGTC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	372, 468
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	289, 431, 479
CviAII	CATG	2 cut(s)	138, 483
CviQI	GTAC	3 cut(s)	289, 431, 479
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	2 cut(s)	30, 212
EagI	CGGCCG	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	192, 482
Eco24I	GRGCYC	2 cut(s)	286, 346
Eco31I	GGTCTC	2 cut(s)	98, 125
Eco47I	GGWCC	1 cut(s)	406
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	63, 73
EcoT14I	CCWWGG	2 cut(s)	192, 482
EcoT38I	GRGCYC	2 cut(s)	286, 346
ErhI	CCWWGG	2 cut(s)	192, 482
Esp3I	CGTCTC	2 cut(s)	44, 305
FaeI	CATG	2 cut(s)	141, 486
FaiI	YATR	7 cut(s)	139, 180, 261, 404, 429, 441, 484
FatI	CATG	2 cut(s)	137, 482
Fnu4HI	GCNGC	3 cut(s)	215, 253, 332
FokI	GGATG	2 cut(s)	359, 475
FriOI	GRGCYC	2 cut(s)	286, 346
Fsp4HI	GCNGC	3 cut(s)	215, 253, 332
FspBI	CTAG	2 cut(s)	231, 347
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	215, 253, 332
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	32, 214
HapII	CCGG	3 cut(s)	8, 29, 33
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	141, 486
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	398
HpaII	CCGG	3 cut(s)	8, 29, 33
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	3 cut(s)	308, 347, 367
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	4 cut(s)	50, 116, 119, 148
HpyAV	CCTTC	2 cut(s)	259, 373
HpyCH4III	ACNGT	2 cut(s)	24, 157
HpyCH4IV	ACGT	2 cut(s)	91, 314
HpyCH4V	TGCA	3 cut(s)	255, 272, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpySE526I	ACGT	2 cut(s)	91, 314
Hsp92II	CATG	2 cut(s)	141, 486
HspAI	GCGC	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	281, 289
Lsp1109I	GCAGC	2 cut(s)	239, 343
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	2 cut(s)	231, 347
MaeII	ACGT	2 cut(s)	91, 314
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	286, 346
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	6 cut(s)	160, 195, 218, 228, 343, 436
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	1 cut(s)	38
MspI	CCGG	3 cut(s)	8, 29, 33
MspR9I	CCNGG	2 cut(s)	65, 75
MvaI	CCWGG	2 cut(s)	65, 75
MwoI	GCNNNNNNNGC	1 cut(s)	25
NaeI	GCCGGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	482
NdeII	GATC	1 cut(s)	304
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	141, 486
NmuCI	GTSAC	1 cut(s)	3
NsbI	TGCGCA	1 cut(s)	296
PasI	CCCWGGG	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	216, 254, 333
PshAI	GACNNNNGTC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	63, 73
PspGI	CCWGG	2 cut(s)	63, 73
PspPI	GGNCC	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	3 cut(s)	290, 432, 480
RsaNI	GTAC	3 cut(s)	289, 431, 479
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	3 cut(s)	215, 253, 332
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	65, 75
SduI	GDGCHC	2 cut(s)	286, 346
SfaNI	GCATC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SsiI	CCGC	2 cut(s)	108, 215
SspMI	CTAG	2 cut(s)	231, 347
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	63, 73
StyI	CCWWGG	2 cut(s)	192, 482
TaaI	ACNGT	2 cut(s)	24, 157
TaiI	ACGT	2 cut(s)	94, 317
TaqII	GACCGA	1 cut(s)	107
TauI	GCSGC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	252, 331
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	2 cut(s)	276, 365
VpaK11BI	GGWCC	1 cut(s)	406
XagI	CCTNNNNNAGG	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	2 cut(s)	231, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.