Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010951

Physical Location & Seq

Genomic Coordinates Forward (+)

21391959 .. 21393811

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1216100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTTACCGGAAAATAAGCAGCAGCCGCCGGACGGACTGAACTACGATGAGACGAAGCTGACCTTAGGGTTGCCTGGTTCGGGCTCGAAACGTGGATTCTCAGAGACCGTTGATATTAGTCTTGGGAGCTCGAGCTCATCGTCGCCAAGAGCAGGGGTGGAATGTTGTGATCAATATAGTGTTGTTGATGGTGGGGACAAAACTCATAAGGCTCCAGCTAAGGCACAAGTGGTTGGATGGCCACCAGTGAGAGTTTCAAGGAAGAACTTGATGAACAGCTGCAAATATGTGAAAGTGGCAGTTGATGGAGCTCCATATCTGCGCAAGGTTGATCTTGAGATGTACAACAGCTATCAGCAGCTTTTGGGTGCTCTTGAGGACATGTTTTCCTTCTTAAAAATCCGTAATTACTTAAATGAGAGCAAGCTTATGGACCCTGCAAATGGGGTGGAATATGTACCAACTTATGAAGACAGAGATGGCGATTGGATGCTTGTTGGAGATGTCCCATGGAAAATGTTTGTGGAAACATGCAAGCGGCTCCGGTTGATGAAAAGCTCAGAGGCGATCGGATTAGCTCCGAGGACGCCTCCGCAATGCACAAGCACACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0140110 GO:1900055 GO:1900057 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

205

Amino Acids

22.62

Weight (kDa)

6.73

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	19 - 195	1.3e-59	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80390
fragaria_vesca	FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica	MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica	Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis	pycom09g13300 pycom17g20310
rosa_chinensis	RchiOBHm_Chr2g0137301
rosa_laevigata	RLG00000019649
rosa_multiflora	Rmu_sc0019961.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107220
rosa_rugosa	Rorug02G0340900
rosa_samantha	Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana	Rw2G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	323
AciI	CCGC	3 cut(s)	26, 538, 593
AcoI	YGGCCR	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	2 cut(s)	344, 459
AfiI	CCNNNNNNNGG	4 cut(s)	32, 80, 152, 443
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	73
Alw21I	GWGCWC	4 cut(s)	131, 137, 313, 373
Alw26I	GTCTC	2 cut(s)	44, 98
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	4 cut(s)	19, 22, 279, 358
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	241
BanII	GRGCYC	4 cut(s)	86, 131, 137, 313
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	4 cut(s)	131, 137, 313, 373
BbvI	GCAGC	4 cut(s)	31, 34, 266, 370
BccI	CCATC	4 cut(s)	182, 231, 299, 473
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	44, 98
BisI	GCNGC	6 cut(s)	20, 23, 26, 280, 359, 539
BlsI	GCNGC	6 cut(s)	21, 24, 27, 281, 360, 540
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	3 cut(s)	213, 435, 542
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	356, 395
BsaHI	GRCGYC	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	509, 581
BsaWI	WCCGGW	2 cut(s)	7, 543
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 80, 152, 443
Bse1I	ACTGG	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	509, 581
BseGI	GGATG	2 cut(s)	242, 495
BseLI	CCNNNNNNNGG	4 cut(s)	32, 80, 152, 443
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	114, 573
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	31, 34, 266, 370
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	4 cut(s)	131, 137, 313, 373
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	8, 29, 544
BslFI	GGGAC	2 cut(s)	209, 491
BslI	CCNNNNNNNGG	4 cut(s)	32, 80, 152, 443
BsmAI	GTCTC	2 cut(s)	44, 98
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	209, 491
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	5 cut(s)	86, 131, 137, 313, 373
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	169, 331, 567
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	3 cut(s)	26, 538, 593
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	113, 572
BspLI	GGNNCC	3 cut(s)	213, 435, 542
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	602
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	509, 581
BssMI	GATC	3 cut(s)	169, 331, 567
BssNI	GRCGYC	1 cut(s)	587
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	425, 536
BstDEI	CTNAG	4 cut(s)	64, 100, 219, 559
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	242, 495
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	172, 334, 570
BstMAI	GTCTC	2 cut(s)	44, 98
BstMBI	GATC	3 cut(s)	169, 331, 567
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	385, 534
BstSCI	CCNGG	1 cut(s)	73
BstV1I	GCAGC	4 cut(s)	31, 34, 266, 370
BstV2I	GAAGAC	1 cut(s)	477
Bsu36I	CCTNAGG	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	242, 495
BtsIMutI	CAGTG	2 cut(s)	252, 610
Cac8I	GCNNGC	2 cut(s)	425, 536
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	343, 458
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	3 cut(s)	382, 510, 531
CviQI	GTAC	2 cut(s)	343, 458
DdeI	CTNAG	4 cut(s)	64, 100, 219, 559
DpnI	GATC	3 cut(s)	171, 333, 569
DpnII	GATC	3 cut(s)	169, 331, 567
EaeI	YGGCCR	1 cut(s)	239
Ecl136II	GAGCTC	3 cut(s)	129, 135, 311
Eco130I	CCWWGG	1 cut(s)	509
Eco24I	GRGCYC	4 cut(s)	86, 131, 137, 313
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	3 cut(s)	129, 135, 311
Eco81I	CCTNAGG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	130
EcoICRI	GAGCTC	3 cut(s)	129, 135, 311
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	509
EcoT38I	GRGCYC	4 cut(s)	86, 131, 137, 313
ErhI	CCWWGG	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	385, 513, 534
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	2 cut(s)	209, 491
FatI	CATG	3 cut(s)	381, 509, 530
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	6 cut(s)	20, 23, 26, 280, 359, 539
FokI	GGATG	2 cut(s)	249, 502
FriOI	GRGCYC	4 cut(s)	86, 131, 137, 313
Fsp4HI	GCNGC	6 cut(s)	20, 23, 26, 280, 359, 539
FspI	TGCGCA	1 cut(s)	323
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	6 cut(s)	20, 23, 26, 280, 359, 539
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	3 cut(s)	8, 29, 544
HgaI	GACGC	1 cut(s)	595
HhaI	GCGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	385, 513, 534
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	3 cut(s)	8, 29, 544
Hpy188I	TCNGA	4 cut(s)	103, 562, 572, 582
Hpy188III	TCNNGA	2 cut(s)	335, 374
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	282, 440, 534, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	4 cut(s)	64, 100, 219, 559
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	385, 513, 534
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	169, 331, 567
LmnI	GCTCC	6 cut(s)	126, 217, 308, 316, 546, 583
LpnPI	CCDG	9 cut(s)	21, 42, 60, 87, 138, 228, 258, 450, 557
Lsp1109I	GCAGC	4 cut(s)	31, 34, 266, 370
LweI	GCATC	1 cut(s)	480
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	171, 333, 569
MboI	GATC	3 cut(s)	169, 331, 567
MboII	GAAGA	2 cut(s)	274, 482
MhlI	GDGCHC	5 cut(s)	86, 131, 137, 313, 373
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	1 cut(s)	406
MluNI	TGGCCA	1 cut(s)	241
MmeI	TCCRAC	2 cut(s)	214, 478
MnlI	CCTC	4 cut(s)	370, 556, 576, 600
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	2 cut(s)	395, 413
Msp20I	TGGCCA	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	3 cut(s)	8, 29, 544
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	3 cut(s)	169, 331, 567
NlaIII	CATG	3 cut(s)	385, 513, 534
NlaIV	GGNNCC	3 cut(s)	213, 435, 542
NsbI	TGCGCA	1 cut(s)	323
NspI	RCATGY	2 cut(s)	385, 534
PaeR7I	CTCGAG	1 cut(s)	130
PciI	ACATGT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	6 cut(s)	21, 24, 27, 281, 360, 540
Ple19I	CGATCG	1 cut(s)	570
PscI	ACATGT	1 cut(s)	381
Psp124BI	GAGCTC	3 cut(s)	131, 137, 313
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	213, 435, 542
PspPI	GGNCC	1 cut(s)	433
PspXI	VCTCGAGB	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	570
PvuII	CAGCTG	1 cut(s)	279
RsaI	GTAC	2 cut(s)	344, 459
RsaNI	GTAC	2 cut(s)	343, 458
SacI	GAGCTC	3 cut(s)	131, 137, 313
SaqAI	TTAA	2 cut(s)	395, 413
SatI	GCNGC	6 cut(s)	20, 23, 26, 280, 359, 539
Sau3AI	GATC	3 cut(s)	169, 331, 567
Sau96I	GGNCC	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	5 cut(s)	86, 131, 137, 313, 373
SfaNI	GCATC	1 cut(s)	480
Sfr274I	CTCGAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	130
SmlI	CTYRAG	3 cut(s)	130, 335, 374
SmoI	CTYRAG	3 cut(s)	130, 335, 374
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	3 cut(s)	26, 538, 593
SstI	GAGCTC	3 cut(s)	131, 137, 313
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	86, 131
TasI	AATT	1 cut(s)	406
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	2 cut(s)	28, 541
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	395, 413
Tru9I	TTAA	2 cut(s)	395, 413
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	4 cut(s)	19, 22, 279, 358
TspDTI	ATGAA	3 cut(s)	287, 483, 566
TspGWI	ACGGA	2 cut(s)	48, 392
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	433
XceI	RCATGY	2 cut(s)	385, 534
XhoI	CTCGAG	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.