Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010951

Physical Location & Seq

Genomic Coordinates Forward (+)

5490339 .. 5492764

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G074900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTAGTGGTATTTTTAATGCTAATGTTGAAAAACATAAAACACATTTTGTTTTACGAGGTTGATTGTTGGTCCATCAAATTTACAAGCAAAGCAAAGAAAAGCATTCGAAACATGTCACCGGCAAATGAGCAGCAGACGCCGGCCGGCTTGAACTACGACGATACCAAGTTGACCTTGGGGTTGCCTGGCTCGGGGTCTAAGCGTGGATTTTCAGAGACCATTGATCTTAGTCTTGGGAGCTCAAGCTCATCGTCGTCAAGATCAGGGGTTGAATGTTGTGATCAAGATTGTGCTGATGGTGATGGGGCCAAAACTCATAAGCCTCCAGCAGCAAAGTCACAAGTGGTGGGGTGGCCGCCAGTGAGAGTGGCAAGGAAGAACTTGATGAAGACGTGCAAGTACGTGAAAGTGGCAGTAGATGGAGCTCCATATCTGCGCAAGGTGGATCTTGAGATGTACAATAGCTATCAGCAGCTGTTGGGTGCTCTTGAGGACATGTTCTCCTTCTTGACCATCCGTAATTATTTGAATGAGAGAAAGCTCATGGACCCTGCAAATGGAGTGGAGTATGTACCAACTTATGAGGACAGAGATGGGGATTGGATGCTTGTAGGAGATGTACCATGGAAAATGTTTGTGGAATCATGCAAGCGGCTCCGGTTGATGAAAAGCTCTGAGGCAGTTGGATTAGCTCCAAGGACACCTCCAAAATCCACAAGCACGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0140110 GO:1900055 GO:1900057 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

244

Amino Acids

27.04

Weight (kDa)

8.92

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80390
fragaria_vesca	FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica	MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica	Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis	pycom09g13300 pycom17g20310
rosa_chinensis	RchiOBHm_Chr2g0137301
rosa_laevigata	RLG00000019649
rosa_multiflora	Rmu_sc0019961.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107220
rosa_rugosa	Rorug02G0340900
rosa_samantha	Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana	Rw2G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	440
AciI	CCGC	2 cut(s)	359, 655
AclWI	GGATC	1 cut(s)	456
AcoI	YGGCCR	2 cut(s)	144, 356
AcsI	RAATTY	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	4 cut(s)	404, 461, 576, 624
AfiI	CCNNNNNNNGG	2 cut(s)	194, 560
AflIII	ACRYGT	2 cut(s)	114, 498
AgsI	TTSAA	4 cut(s)	31, 154, 275, 532
AjiI	CACGTC	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	8 cut(s)	243, 249, 428, 468, 478, 544, 675, 695
AluI	AGCT	8 cut(s)	243, 249, 428, 468, 478, 544, 675, 695
Alw21I	GWGCWC	3 cut(s)	245, 430, 490
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	456
AlwNI	CAGNNNCTG	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	3 cut(s)	144, 309, 356
ApeKI	GCWGC	3 cut(s)	133, 332, 475
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	72, 309, 550
AsuHPI	GGTGA	2 cut(s)	111, 314
AsuII	TTCGAA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	72, 550
BanII	GRGCYC	2 cut(s)	245, 430
BauI	CACGAG	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	3 cut(s)	245, 430, 490
BbvI	GCAGC	3 cut(s)	145, 344, 487
BccI	CCATC	6 cut(s)	83, 293, 299, 416, 524, 590
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	5 cut(s)	134, 333, 359, 476, 656
BlsI	GCNGC	5 cut(s)	135, 334, 360, 477, 657
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	72, 550
BmeT110I	CYCGRG	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	396
BmgT120I	GGNCC	3 cut(s)	72, 309, 550
BmiI	GGNNCC	3 cut(s)	310, 552, 659
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	109
BpuEI	CTTGAG	3 cut(s)	229, 473, 512
BsaAI	YACGTR	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	177, 626, 698
BsaWI	WCCGGW	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 560
Bse118I	RCCGGY	3 cut(s)	121, 142, 146
Bse1I	ACTGG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	177, 626, 698
BseGI	GGATG	2 cut(s)	516, 612
BseLI	CCNNNNNNNGG	2 cut(s)	194, 560
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	145, 344, 487
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	146, 311, 358
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	3 cut(s)	245, 430, 490
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	4 cut(s)	122, 143, 147, 661
BslI	CCNNNNNNNGG	2 cut(s)	194, 560
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	146, 311, 358
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	3 cut(s)	245, 430, 490
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	4 cut(s)	226, 263, 283, 448
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	2 cut(s)	359, 655
BspANI	GGCC	3 cut(s)	146, 311, 358
BspCNI	CTCAG	1 cut(s)	670
BspLI	GGNNCC	3 cut(s)	310, 552, 659
BspPI	GGATC	1 cut(s)	456
BspT104I	TTCGAA	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	212
BsrFI	RCCGGY	3 cut(s)	121, 142, 146
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	362
BssAI	RCCGGY	3 cut(s)	121, 142, 146
BssECI	CCNNGG	3 cut(s)	177, 626, 698
BssMI	GATC	4 cut(s)	226, 263, 283, 448
BssNI	GRCGYC	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	724
BssT1I	CCWWGG	3 cut(s)	177, 626, 698
Bst2BI	CACGAG	1 cut(s)	724
Bst2UI	CCWGG	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	459
BstBAI	YACGTR	1 cut(s)	406
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	144, 148, 653
BstDEI	CTNAG	3 cut(s)	201, 230, 678
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	2 cut(s)	516, 612
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	4 cut(s)	229, 266, 286, 451
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	226, 263, 283, 448
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	118, 502
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	3 cut(s)	145, 344, 487
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	146, 311, 358
BtgI	CCRYGG	1 cut(s)	626
BtrI	CACGTC	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	516, 612
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	144, 148, 653
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	3 cut(s)	121, 142, 146
Cfr13I	GGNCC	3 cut(s)	72, 309, 550
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	403, 460, 575, 623
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	5 cut(s)	115, 499, 547, 627, 648
CviQI	GTAC	4 cut(s)	403, 460, 575, 623
DdeI	CTNAG	3 cut(s)	201, 230, 678
DpnI	GATC	4 cut(s)	228, 265, 285, 450
DpnII	GATC	4 cut(s)	226, 263, 283, 448
EaeI	YGGCCR	2 cut(s)	144, 356
EagI	CGGCCG	1 cut(s)	144
Ecl136II	GAGCTC	2 cut(s)	243, 428
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	3 cut(s)	177, 626, 698
Eco24I	GRGCYC	2 cut(s)	245, 430
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	72, 550
Eco52I	CGGCCG	1 cut(s)	144
Eco53kI	GAGCTC	2 cut(s)	243, 428
Eco88I	CYCGRG	1 cut(s)	193
EcoICRI	GAGCTC	2 cut(s)	243, 428
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	3 cut(s)	177, 626, 698
EcoT38I	GRGCYC	2 cut(s)	245, 430
ErhI	CCWWGG	3 cut(s)	177, 626, 698
FaeI	CATG	5 cut(s)	118, 502, 550, 630, 651
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	5 cut(s)	114, 498, 546, 626, 647
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	134, 333, 359, 476, 656
FokI	GGATG	2 cut(s)	503, 619
FriOI	GRGCYC	2 cut(s)	245, 430
Fsp4HI	GCNGC	5 cut(s)	134, 333, 359, 476, 656
FspI	TGCGCA	1 cut(s)	440
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	5 cut(s)	134, 333, 359, 476, 656
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	146, 311, 358
HapII	CCGG	4 cut(s)	122, 143, 147, 661
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	5 cut(s)	118, 502, 550, 630, 651
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	644
HpaII	CCGG	4 cut(s)	122, 143, 147, 661
HphI	GGTGA	2 cut(s)	111, 314
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	217, 679
Hpy188III	TCNNGA	5 cut(s)	261, 287, 452, 491, 511
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	2 cut(s)	164, 259
HpyAV	CCTTC	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	395, 405
HpyCH4V	TGCA	3 cut(s)	399, 557, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	201, 230, 678
HpySE526I	ACGT	2 cut(s)	395, 405
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	118, 502, 550, 630, 651
HspAI	GCGC	1 cut(s)	439
KroI	GCCGGC	2 cut(s)	142, 146
KroNI	GCCGGC	2 cut(s)	144, 148
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	226, 263, 283, 448
LmnI	GCTCC	5 cut(s)	240, 425, 433, 663, 700
Lsp1109I	GCAGC	3 cut(s)	145, 344, 487
LweI	GCATC	1 cut(s)	597
MaeII	ACGT	2 cut(s)	395, 405
MaeIII	GTNAC	2 cut(s)	117, 339
MalI	GATC	4 cut(s)	228, 265, 285, 450
MboI	GATC	4 cut(s)	226, 263, 283, 448
MboII	GAAGA	2 cut(s)	391, 403
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	3 cut(s)	245, 430, 490
MluCI	AATT	2 cut(s)	80, 523
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	6 cut(s)	52, 336, 487, 580, 673, 717
MroNI	GCCGGC	2 cut(s)	142, 146
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	4 cut(s)	122, 143, 147, 661
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	139
NaeI	GCCGGC	2 cut(s)	144, 148
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	4 cut(s)	226, 263, 283, 448
NgoMIV	GCCGGC	2 cut(s)	142, 146
NlaIII	CATG	5 cut(s)	118, 502, 550, 630, 651
NlaIV	GGNNCC	3 cut(s)	310, 552, 659
NmuCI	GTSAC	2 cut(s)	117, 339
NsbI	TGCGCA	1 cut(s)	440
NspI	RCATGY	2 cut(s)	118, 502
NspV	TTCGAA	1 cut(s)	109
PciI	ACATGT	2 cut(s)	114, 498
PctI	GAATGC	1 cut(s)	105
PdiI	GCCGGC	2 cut(s)	144, 148
PfeI	GAWTC	1 cut(s)	644
PkrI	GCNGC	5 cut(s)	135, 334, 360, 477, 657
Ppu21I	YACGTR	1 cut(s)	406
PscI	ACATGT	2 cut(s)	114, 498
Psp124BI	GAGCTC	2 cut(s)	245, 430
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	310, 552, 659
PspPI	GGNCC	3 cut(s)	72, 309, 550
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	4 cut(s)	404, 461, 576, 624
RsaNI	GTAC	4 cut(s)	403, 460, 575, 623
SacI	GAGCTC	2 cut(s)	245, 430
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	5 cut(s)	134, 333, 359, 476, 656
Sau3AI	GATC	4 cut(s)	226, 263, 283, 448
Sau96I	GGNCC	3 cut(s)	72, 309, 550
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	3 cut(s)	245, 430, 490
SfaNI	GCATC	1 cut(s)	597
SfuI	TTCGAA	1 cut(s)	109
SinI	GGWCC	2 cut(s)	72, 550
SmlI	CTYRAG	3 cut(s)	244, 452, 491
SmoI	CTYRAG	3 cut(s)	244, 452, 491
Sse9I	AATT	2 cut(s)	80, 523
SsiI	CCGC	2 cut(s)	359, 655
SstI	GAGCTC	2 cut(s)	245, 430
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	3 cut(s)	177, 626, 698
TaiI	ACGT	2 cut(s)	398, 408
TaqI	TCGA	1 cut(s)	109
TasI	AATT	2 cut(s)	80, 523
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	2 cut(s)	361, 658
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	2 cut(s)	117, 339
TseI	GCWGC	3 cut(s)	133, 332, 475
Tsp45I	GTSAC	2 cut(s)	117, 339
TspDTI	ATGAA	2 cut(s)	404, 683
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	72, 550
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	2 cut(s)	118, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.