Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010951

Physical Location & Seq

Genomic Coordinates Forward (+)

18519172 .. 18521123

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAACCCGTCGACAGCGTATCAATATTATGGAAGGCTTTGTGTTCTCATCATAGGGCAGCAAGAAGCCGGCTAAAATCTTGCTGGTCAATCTATCACATTGAAGCAAAAACCAAAAGCAAAGCAAAAGCTCCCAAAATGGCACCGGAAGTTAAGCAGCAGTCGCCGGCCGGACTGAACTACGACGAGACCAAGCTGACCTTAGGGTTGCCTGGTTCGGGCTCGAAACGTGGATTTTCAGAGACCGTTGATCTTAGTCTGGGTAGCTCAAGCTCATCATCGTCAGGAGCAAGGGTGGAATGTTGTGATCAAGGTTGTGTTGATGATGGTGGGGTCACTACTCATAAGTCTCCAGCTGCAAAGGCACAAGTGGTTGGTTGGCCACCGGTGAGAGTTTCAAGGAAGAAGTTGATGAAGAGCTGCAAGTATGTGAAAGTGGCAGTTGATGGAGCTCCATATCTGCGCAAGATCGATCTTGAGATGTACAATAGCTATCAGCAGCTTTTGGGTGCTCTTGAGGACATGTTTTCCTTCTTAACCATCCGTAATTGCTTAAATGAGAGCAAGCTTATGGACCCTGCAAATGGAGTGGAATATGTACCAACTTATGAAGACAGAGATGGGGACTGGATGCTGGTGGGAGATGTACCATGGAAAATGTTTGTGGAAACATGCAAGCGACTCCGGTTGATGAAAAGCTCGGAGGCGATCGGATTAGCTCCGAGCACGCCTCCGCGATGCAGAAGCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0140110 GO:1900055 GO:1900057 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

252

Amino Acids

27.64

Weight (kDa)

9.15

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	53 - 140	8.3e-10	AUX/IAA family
AUX_IAA	PF02309	139 - 241	1e-49	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80390
fragaria_vesca	FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica	MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica	Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis	pycom09g13300 pycom17g20310
rosa_chinensis	RchiOBHm_Chr2g0137301
rosa_laevigata	RLG00000019649
rosa_multiflora	Rmu_sc0019961.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107220
rosa_rugosa	Rorug02G0340900
rosa_samantha	Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana	Rw2G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	1 cut(s)	736
AciI	CCGC	1 cut(s)	734
AcoI	YGGCCR	2 cut(s)	168, 380
AfaI	GTAC	3 cut(s)	485, 600, 648
AfiI	CCNNNNNNNGG	2 cut(s)	218, 584
AflIII	ACRYGT	1 cut(s)	522
AgeI	ACCGGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	104, 399
AjnI	CCWGG	1 cut(s)	211
Alw21I	GWGCWC	3 cut(s)	454, 514, 728
Alw26I	GTCTC	3 cut(s)	182, 236, 354
AoxI	GGCC	2 cut(s)	168, 380
ApeKI	GCWGC	5 cut(s)	59, 157, 356, 420, 499
AsiGI	ACCGGT	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	574
AxyI	CCTNAGG	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	224, 454
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	3 cut(s)	454, 514, 728
BbvI	GCAGC	5 cut(s)	71, 169, 343, 407, 511
BccI	CCATC	4 cut(s)	320, 440, 548, 614
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	182, 236, 354
BisI	GCNGC	5 cut(s)	60, 158, 357, 421, 500
BlsI	GCNGC	5 cut(s)	61, 159, 358, 422, 501
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	2 cut(s)	144, 576
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	621, 728
BpiI	GAAGAC	1 cut(s)	618
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpmI	CTGGAG	1 cut(s)	336
BpuEI	CTTGAG	3 cut(s)	253, 497, 536
Bsa29I	ATCGAT	1 cut(s)	471
BsaI	GGTCTC	2 cut(s)	182, 236
BsaJI	CCNNGG	1 cut(s)	650
BsaWI	WCCGGW	3 cut(s)	145, 385, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 584
Bse118I	RCCGGY	3 cut(s)	69, 166, 385
Bse1I	ACTGG	1 cut(s)	632
Bse21I	CCTNAGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	650
BseGI	GGATG	2 cut(s)	540, 636
BseLI	CCNNNNNNNGG	2 cut(s)	218, 584
BseNI	ACTGG	1 cut(s)	632
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	5 cut(s)	71, 169, 343, 407, 511
Bsh1236I	CGCG	1 cut(s)	736
Bsh1285I	CGRYCG	2 cut(s)	171, 711
BshFI	GGCC	2 cut(s)	170, 382
BshNI	GGYRCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	385
BshVI	ATCGAT	1 cut(s)	471
BsiEI	CGRYCG	2 cut(s)	171, 711
BsiHKAI	GWGCWC	3 cut(s)	454, 514, 728
BsiSI	CCGG	6 cut(s)	70, 146, 167, 171, 386, 685
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	218, 584
BsmAI	GTCTC	3 cut(s)	182, 236, 354
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	170, 382
Bso31I	GGTCTC	2 cut(s)	182, 236
Bsp1286I	GDGCHC	4 cut(s)	224, 454, 514, 728
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	5 cut(s)	250, 307, 468, 472, 708
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	1 cut(s)	734
BspANI	GGCC	2 cut(s)	170, 382
BspDI	ATCGAT	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	144, 576
BspQI	GCTCTTC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	142
BspTNI	GGTCTC	2 cut(s)	182, 236
BsrFI	RCCGGY	3 cut(s)	69, 166, 385
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	632
BssAI	RCCGGY	3 cut(s)	69, 166, 385
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	5 cut(s)	250, 307, 468, 472, 708
BssT1I	CCWWGG	1 cut(s)	650
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	5 cut(s)	71, 168, 566, 677, 728
BstDEI	CTNAG	2 cut(s)	202, 254
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	2 cut(s)	540, 636
BstFNI	CGCG	1 cut(s)	736
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	5 cut(s)	253, 310, 471, 475, 711
BstMAI	GTCTC	3 cut(s)	182, 236, 354
BstMBI	GATC	5 cut(s)	250, 307, 468, 472, 708
BstMCI	CGRYCG	2 cut(s)	171, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 362
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	2 cut(s)	526, 675
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	1 cut(s)	736
BstV1I	GCAGC	5 cut(s)	71, 169, 343, 407, 511
BstV2I	GAAGAC	1 cut(s)	618
BstZI	CGGCCG	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	170, 382
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	650
BtgZI	GCGATG	1 cut(s)	751
BtsCI	GGATG	2 cut(s)	540, 636
Cac8I	GCNNGC	5 cut(s)	71, 168, 566, 677, 728
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	3 cut(s)	69, 166, 385
Cfr13I	GGNCC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	471
Csp6I	GTAC	3 cut(s)	484, 599, 647
CspAI	ACCGGT	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	3 cut(s)	523, 651, 672
CviQI	GTAC	3 cut(s)	484, 599, 647
DdeI	CTNAG	2 cut(s)	202, 254
DpnI	GATC	5 cut(s)	252, 309, 470, 474, 710
DpnII	GATC	5 cut(s)	250, 307, 468, 472, 708
EaeI	YGGCCR	2 cut(s)	168, 380
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	452
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	2 cut(s)	224, 454
Eco31I	GGTCTC	2 cut(s)	182, 236
Eco47I	GGWCC	1 cut(s)	574
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	650
EcoT38I	GRGCYC	2 cut(s)	224, 454
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	3 cut(s)	526, 654, 675
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	3 cut(s)	522, 650, 671
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	60, 158, 357, 421, 500
FokI	GGATG	2 cut(s)	527, 643
FriOI	GRGCYC	2 cut(s)	224, 454
Fsp4HI	GCNGC	5 cut(s)	60, 158, 357, 421, 500
FspI	TGCGCA	1 cut(s)	464
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	60, 158, 357, 421, 500
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	170, 382
HapII	CCGG	6 cut(s)	70, 146, 167, 171, 386, 685
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	3 cut(s)	526, 654, 675
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	1 cut(s)	681
HpaII	CCGG	6 cut(s)	70, 146, 167, 171, 386, 685
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	4 cut(s)	241, 703, 713, 723
Hpy188III	TCNNGA	3 cut(s)	285, 476, 515
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	2 cut(s)	14, 188
HpyAV	CCTTC	2 cut(s)	28, 541
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	6 cut(s)	4, 359, 423, 581, 675, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 362
HpyF3I	CTNAG	2 cut(s)	202, 254
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	526, 654, 675
HspAI	GCGC	1 cut(s)	463
KroI	GCCGGC	2 cut(s)	69, 166
KroNI	GCCGGC	2 cut(s)	71, 168
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	5 cut(s)	250, 307, 468, 472, 708
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	5 cut(s)	136, 287, 449, 457, 724
Lsp1109I	GCAGC	5 cut(s)	71, 169, 343, 407, 511
LweI	GCATC	2 cut(s)	621, 728
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	5 cut(s)	252, 309, 470, 474, 710
MboI	GATC	5 cut(s)	250, 307, 468, 472, 708
MboII	GAAGA	3 cut(s)	415, 427, 623
MhlI	GDGCHC	4 cut(s)	224, 454, 514, 728
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	2 cut(s)	547, 751
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	675
MnlI	CCTC	3 cut(s)	511, 697, 741
Mox20I	TGGCCA	1 cut(s)	382
MroNI	GCCGGC	2 cut(s)	69, 166
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	3 cut(s)	153, 536, 554
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	6 cut(s)	70, 146, 167, 171, 386, 685
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	736
MwoI	GCNNNNNNNGC	2 cut(s)	163, 362
NaeI	GCCGGC	2 cut(s)	71, 168
NcoI	CCATGG	1 cut(s)	650
NdeII	GATC	5 cut(s)	250, 307, 468, 472, 708
NgoMIV	GCCGGC	2 cut(s)	69, 166
NlaIII	CATG	3 cut(s)	526, 654, 675
NlaIV	GGNNCC	2 cut(s)	144, 576
NmuCI	GTSAC	1 cut(s)	334
NsbI	TGCGCA	1 cut(s)	464
NspI	RCATGY	2 cut(s)	526, 675
PciI	ACATGT	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	410
PdiI	GCCGGC	2 cut(s)	71, 168
PinAI	ACCGGT	1 cut(s)	385
PkrI	GCNGC	5 cut(s)	61, 159, 358, 422, 501
Ple19I	CGATCG	1 cut(s)	711
PleI	GAGTC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	675
PscI	ACATGT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	144, 576
PspPI	GGNCC	1 cut(s)	574
PvuI	CGATCG	1 cut(s)	711
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	3 cut(s)	485, 600, 648
RsaNI	GTAC	3 cut(s)	484, 599, 647
SacI	GAGCTC	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	11
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	153, 536, 554
SatI	GCNGC	5 cut(s)	60, 158, 357, 421, 500
Sau3AI	GATC	5 cut(s)	250, 307, 468, 472, 708
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	675
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	4 cut(s)	224, 454, 514, 728
SfaNI	GCATC	2 cut(s)	621, 728
SgrAI	CRCCGGYG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	574
SmlI	CTYRAG	3 cut(s)	268, 476, 515
SmoI	CTYRAG	3 cut(s)	268, 476, 515
Sse9I	AATT	2 cut(s)	547, 751
SsiI	CCGC	1 cut(s)	734
SspI	AATATT	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	12, 224, 471
TasI	AATT	2 cut(s)	547, 751
TatI	WGTACW	1 cut(s)	483
Tru1I	TTAA	3 cut(s)	153, 536, 554
Tru9I	TTAA	3 cut(s)	153, 536, 554
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	59, 157, 356, 420, 499
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	428, 624, 707
TspGWI	ACGGA	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	574
XceI	RCATGY	2 cut(s)	526, 675
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.