Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G80390 |
| fragaria_vesca | FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 |
| malus_domestica | MD09G1216100.v1.1 MD17G1198300.v1.1 |
| prunus_persica | Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1 |
| pyrus_communis | pycom09g13300 pycom17g20310 |
| rosa_chinensis | RchiOBHm_Chr2g0137301 |
| rosa_laevigata | RLG00000019649 |
| rosa_multiflora | Rmu_sc0019961.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00107220 |
| rosa_rugosa | Rorug02G0340900 |
| rosa_samantha | Rh2AG389200 Rh2BG397000 Rh2DG412000 |
| rosa_wichuraiana | Rw2G031910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 165, 210 |
| AclWI | GGATC | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| Alw26I | GTCTC | 2 cut(s) | 59, 117 |
| AlwI | GGATC | 1 cut(s) | 157 |
| ApeKI | GCWGC | 1 cut(s) | 81 |
| BbvI | GCAGC | 1 cut(s) | 93 |
| BccI | CCATC | 1 cut(s) | 124 |
| BcoDI | GTCTC | 2 cut(s) | 59, 117 |
| BfaI | CTAG | 1 cut(s) | 6 |
| BisI | GCNGC | 1 cut(s) | 82 |
| BlsI | GCNGC | 1 cut(s) | 83 |
| BmiI | GGNNCC | 1 cut(s) | 193 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 39, 71 |
| Bsa29I | ATCGAT | 1 cut(s) | 128 |
| BsaI | GGTCTC | 1 cut(s) | 59 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 33, 63 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bse118I | RCCGGY | 1 cut(s) | 194 |
| BseCI | ATCGAT | 1 cut(s) | 128 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseRI | GAGGAG | 1 cut(s) | 204 |
| BseXI | GCAGC | 1 cut(s) | 93 |
| Bsh1285I | CGRYCG | 1 cut(s) | 169 |
| BshVI | ATCGAT | 1 cut(s) | 128 |
| BsiEI | CGRYCG | 1 cut(s) | 169 |
| BsiSI | CCGG | 2 cut(s) | 78, 195 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BsmAI | GTCTC | 2 cut(s) | 59, 117 |
| Bso31I | GGTCTC | 1 cut(s) | 59 |
| Bsp143I | GATC | 1 cut(s) | 149 |
| BspACI | CCGC | 2 cut(s) | 165, 210 |
| BspDI | ATCGAT | 1 cut(s) | 128 |
| BspLI | GGNNCC | 1 cut(s) | 193 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BspTNI | GGTCTC | 1 cut(s) | 59 |
| BsrFI | RCCGGY | 1 cut(s) | 194 |
| BssAI | RCCGGY | 1 cut(s) | 194 |
| BssMI | GATC | 1 cut(s) | 149 |
| BstC8I | GCNNGC | 1 cut(s) | 86 |
| BstKTI | GATC | 1 cut(s) | 152 |
| BstMAI | GTCTC | 2 cut(s) | 59, 117 |
| BstMBI | GATC | 1 cut(s) | 149 |
| BstMCI | CGRYCG | 1 cut(s) | 169 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 162 |
| BstV1I | GCAGC | 1 cut(s) | 93 |
| Bsu15I | ATCGAT | 1 cut(s) | 128 |
| BsuTUI | ATCGAT | 1 cut(s) | 128 |
| Cac8I | GCNNGC | 1 cut(s) | 86 |
| Cfr10I | RCCGGY | 1 cut(s) | 194 |
| ClaI | ATCGAT | 1 cut(s) | 128 |
| CviAII | CATG | 3 cut(s) | 38, 100, 182 |
| CviJI | RGCY | 3 cut(s) | 5, 84, 194 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 84, 194 |
| DpnI | GATC | 1 cut(s) | 151 |
| DpnII | GATC | 1 cut(s) | 149 |
| Eco31I | GGTCTC | 1 cut(s) | 59 |
| FaeI | CATG | 3 cut(s) | 41, 103, 185 |
| FaiI | YATR | 6 cut(s) | 39, 101, 110, 125, 137, 183 |
| FatI | CATG | 3 cut(s) | 37, 99, 181 |
| Fnu4HI | GCNGC | 1 cut(s) | 82 |
| Fsp4HI | GCNGC | 1 cut(s) | 82 |
| FspBI | CTAG | 1 cut(s) | 6 |
| GluI | GCNGC | 1 cut(s) | 82 |
| HapII | CCGG | 2 cut(s) | 78, 195 |
| Hin1II | CATG | 3 cut(s) | 41, 103, 185 |
| HpaII | CCGG | 2 cut(s) | 78, 195 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 162 |
| Hsp92II | CATG | 3 cut(s) | 41, 103, 185 |
| Kzo9I | GATC | 1 cut(s) | 149 |
| LmnI | GCTCC | 1 cut(s) | 191 |
| LpnPI | CCDG | 3 cut(s) | 91, 98, 208 |
| Lsp1109I | GCAGC | 1 cut(s) | 93 |
| MaeI | CTAG | 1 cut(s) | 6 |
| MalI | GATC | 1 cut(s) | 151 |
| MboI | GATC | 1 cut(s) | 149 |
| MluCI | AATT | 1 cut(s) | 10 |
| MnlI | CCTC | 3 cut(s) | 182, 197, 221 |
| MslI | CAYNNNNRTG | 1 cut(s) | 128 |
| MspI | CCGG | 2 cut(s) | 78, 195 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 162 |
| NdeII | GATC | 1 cut(s) | 149 |
| NlaIII | CATG | 3 cut(s) | 41, 103, 185 |
| NlaIV | GGNNCC | 1 cut(s) | 193 |
| PkrI | GCNGC | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 1 cut(s) | 193 |
| RseI | CAYNNNNRTG | 1 cut(s) | 128 |
| SatI | GCNGC | 1 cut(s) | 82 |
| Sau3AI | GATC | 1 cut(s) | 149 |
| SetI | ASST | 3 cut(s) | 55, 208, 232 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 128 |
| Sse9I | AATT | 1 cut(s) | 10 |
| SsiI | CCGC | 2 cut(s) | 165, 210 |
| SspMI | CTAG | 1 cut(s) | 6 |
| TaqI | TCGA | 1 cut(s) | 128 |
| TasI | AATT | 1 cut(s) | 10 |
| TseI | GCWGC | 1 cut(s) | 81 |
| XspI | CTAG | 1 cut(s) | 6 |