Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010951

Physical Location & Seq

Genomic Coordinates Forward (+)

11988616 .. 11990053

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCACCGGAAAATAAGCGGCAGCCGCCGGCCGGACTGAACTACGATGAGACGAAGCTGACCTTAGGGTTGCCTGGTTCAGGCTCGAAACGTGGATTCTCAGAGACCGTTGATATTAGTTTTGGGAGCTCGAGCTCATCGTCGTCAGGAGCAGGGGTGGAATGTTGTGGTCAATATAGTGTTGTTGATGGTGGGGACAAAACTCATAAGGCTCCAGCTGCAAAGGCACAAGTGGTTGGATGGCCACCAGTGAGAGTTTCAAGGAAGAACTTGATGAAGAGCTGCAAATATGTGAAAGTGGCAGTTGATGGAGCTCCATATCTGCGCAAGGTTGATCTTGAGATGTACAATAGCTATCAGCAGCTTTTGGGTGCTCTTGAGGACATGTTTTCCTTCTTAACAATCCGTAATTACTTAAATGAGAGCAAGCTTCTGGACCCTGCAAATGGGGTAGAATATGTACCAACTTATGAAGACAGAGATGACGATTGGATGCTTGTTGGAGATGTCCCATGGATAATGTTTGTGGAAACATGCAAGCGGCTCCGGTTGATGAAAAGCTCAGAGGCGATCGGATTAGCTCCGAGGACGCCTCCGCAATGCACAAGCACACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0140110 GO:1900055 GO:1900057 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

206

Amino Acids

22.53

Weight (kDa)

6.73

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80390
fragaria_vesca	FvH4_6g30850 FvH4_6g30850 FvH4_6g30850 FvH4_6g30850
malus_domestica	MD09G1216100.v1.1 MD17G1198300.v1.1
prunus_persica	Prupe.3G074900_v2.0.a1 Prupe.3G074900_v2.0.a1
pyrus_communis	pycom09g13300 pycom17g20310
rosa_chinensis	RchiOBHm_Chr2g0137301
rosa_laevigata	RLG00000019649
rosa_multiflora	Rmu_sc0019961.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107220
rosa_rugosa	Rorug02G0340900
rosa_samantha	Rh2AG389200 Rh2BG397000 Rh2DG412000
rosa_wichuraiana	Rw2G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	326
AciI	CCGC	4 cut(s)	19, 26, 541, 596
AcoI	YGGCCR	2 cut(s)	30, 242
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	2 cut(s)	347, 462
AfiI	CCNNNNNNNGG	3 cut(s)	32, 80, 446
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	73
Alw21I	GWGCWC	4 cut(s)	131, 137, 316, 376
Alw26I	GTCTC	2 cut(s)	44, 98
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	30, 242
ApeKI	GCWGC	4 cut(s)	22, 218, 282, 361
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	244
BanII	GRGCYC	3 cut(s)	131, 137, 316
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	4 cut(s)	131, 137, 316, 376
BbvI	GCAGC	4 cut(s)	34, 205, 269, 373
BccI	CCATC	3 cut(s)	182, 234, 302
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	44, 98
BisI	GCNGC	7 cut(s)	20, 23, 26, 219, 283, 362, 542
BlsI	GCNGC	7 cut(s)	21, 24, 27, 220, 284, 363, 543
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	3 cut(s)	213, 438, 545
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	359, 398
BsaHI	GRCGYC	1 cut(s)	590
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	512, 584
BsaWI	WCCGGW	2 cut(s)	7, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 80, 446
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	512, 584
BseGI	GGATG	2 cut(s)	245, 498
BseLI	CCNNNNNNNGG	3 cut(s)	32, 80, 446
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	2 cut(s)	114, 576
BseNI	ACTGG	1 cut(s)	248
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	4 cut(s)	34, 205, 269, 373
Bsh1285I	CGRYCG	2 cut(s)	33, 573
BshFI	GGCC	2 cut(s)	32, 244
BsiEI	CGRYCG	2 cut(s)	33, 573
BsiHKAI	GWGCWC	4 cut(s)	131, 137, 316, 376
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	4 cut(s)	8, 29, 33, 547
BslFI	GGGAC	2 cut(s)	209, 494
BslI	CCNNNNNNNGG	3 cut(s)	32, 80, 446
BsmAI	GTCTC	2 cut(s)	44, 98
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	209, 494
BsnI	GGCC	2 cut(s)	32, 244
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	4 cut(s)	131, 137, 316, 376
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	334, 570
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	4 cut(s)	19, 26, 541, 596
BspANI	GGCC	2 cut(s)	32, 244
BspCNI	CTCAG	2 cut(s)	113, 575
BspLI	GGNNCC	3 cut(s)	213, 438, 545
BspQI	GCTCTTC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	512, 584
BssMI	GATC	2 cut(s)	334, 570
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	3 cut(s)	30, 428, 539
BstDEI	CTNAG	3 cut(s)	64, 100, 562
BstDSI	CCRYGG	1 cut(s)	512
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	245, 498
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	2 cut(s)	337, 573
BstMAI	GTCTC	2 cut(s)	44, 98
BstMBI	GATC	2 cut(s)	334, 570
BstMCI	CGRYCG	2 cut(s)	33, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 218, 224
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	388, 537
BstSCI	CCNGG	1 cut(s)	73
BstV1I	GCAGC	4 cut(s)	34, 205, 269, 373
BstV2I	GAAGAC	1 cut(s)	480
BstZI	CGGCCG	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	32, 244
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	245, 498
BtsIMutI	CAGTG	2 cut(s)	255, 613
Cac8I	GCNNGC	3 cut(s)	30, 428, 539
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	346, 461
CviAII	CATG	3 cut(s)	385, 513, 534
CviQI	GTAC	2 cut(s)	346, 461
DdeI	CTNAG	3 cut(s)	64, 100, 562
DpnI	GATC	2 cut(s)	336, 572
DpnII	GATC	2 cut(s)	334, 570
EaeI	YGGCCR	2 cut(s)	30, 242
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	3 cut(s)	129, 135, 314
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	3 cut(s)	131, 137, 316
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	436
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	3 cut(s)	129, 135, 314
Eco81I	CCTNAGG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	130
EcoICRI	GAGCTC	3 cut(s)	129, 135, 314
EcoNI	CCTNNNNNAGG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	3 cut(s)	131, 137, 316
ErhI	CCWWGG	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	388, 516, 537
FaiI	YATR	9 cut(s)	177, 207, 291, 319, 386, 459, 471, 514, 535
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	2 cut(s)	209, 494
FatI	CATG	3 cut(s)	384, 512, 533
Fnu4HI	GCNGC	7 cut(s)	20, 23, 26, 219, 283, 362, 542
FokI	GGATG	2 cut(s)	252, 505
FriOI	GRGCYC	3 cut(s)	131, 137, 316
Fsp4HI	GCNGC	7 cut(s)	20, 23, 26, 219, 283, 362, 542
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	7 cut(s)	20, 23, 26, 219, 283, 362, 542
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	32, 244
HapII	CCGG	4 cut(s)	8, 29, 33, 547
HgaI	GACGC	1 cut(s)	598
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	3 cut(s)	388, 516, 537
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	4 cut(s)	8, 29, 33, 547
Hpy188I	TCNGA	4 cut(s)	103, 565, 575, 585
Hpy188III	TCNNGA	4 cut(s)	147, 338, 377, 434
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	221, 285, 443, 537, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 218, 224
HpyF3I	CTNAG	3 cut(s)	64, 100, 562
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	3 cut(s)	388, 516, 537
HspAI	GCGC	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	334, 570
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	7 cut(s)	126, 149, 217, 311, 319, 549, 586
Lsp1109I	GCAGC	4 cut(s)	34, 205, 269, 373
LweI	GCATC	1 cut(s)	483
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	336, 572
MboI	GATC	2 cut(s)	334, 570
MboII	GAAGA	3 cut(s)	277, 289, 485
MhlI	GDGCHC	4 cut(s)	131, 137, 316, 376
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	1 cut(s)	409
MluNI	TGGCCA	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	217, 481
MnlI	CCTC	4 cut(s)	373, 559, 579, 603
Mox20I	TGGCCA	1 cut(s)	244
MroNI	GCCGGC	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	2 cut(s)	398, 416
Msp20I	TGGCCA	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	4 cut(s)	8, 29, 33, 547
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	25, 218, 224
NaeI	GCCGGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	2 cut(s)	334, 570
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	3 cut(s)	388, 516, 537
NlaIV	GGNNCC	3 cut(s)	213, 438, 545
NmuCI	GTSAC	1 cut(s)	3
NsbI	TGCGCA	1 cut(s)	326
NspI	RCATGY	2 cut(s)	388, 537
PaeR7I	CTCGAG	1 cut(s)	130
PciI	ACATGT	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	21, 24, 27, 220, 284, 363, 543
Ple19I	CGATCG	1 cut(s)	573
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	3 cut(s)	131, 137, 316
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	213, 438, 545
PspPI	GGNCC	1 cut(s)	436
PspXI	VCTCGAGB	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	347, 462
RsaNI	GTAC	2 cut(s)	346, 461
SacI	GAGCTC	3 cut(s)	131, 137, 316
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	398, 416
SatI	GCNGC	7 cut(s)	20, 23, 26, 219, 283, 362, 542
Sau3AI	GATC	2 cut(s)	334, 570
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	4 cut(s)	131, 137, 316, 376
SfaNI	GCATC	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	130
SmlI	CTYRAG	3 cut(s)	130, 338, 377
SmoI	CTYRAG	3 cut(s)	130, 338, 377
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	4 cut(s)	19, 26, 541, 596
SstI	GAGCTC	3 cut(s)	131, 137, 316
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	86, 131
TasI	AATT	1 cut(s)	409
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	3 cut(s)	22, 28, 544
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	398, 416
Tru9I	TTAA	2 cut(s)	398, 416
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	4 cut(s)	22, 218, 282, 361
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	290, 486, 569
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	78
XceI	RCATGY	2 cut(s)	388, 537
XhoI	CTCGAG	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.