AT1G80580

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017187
Physical Location & Seq
Forward (+)
30293558 .. 30294328
771 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80580.1

Sequence Viewer

Length: 771 bp
ATGGAAAACAGCTACACCGTTGATGGTCACCGTCTTCAATATTCCGTTCCGTTAAGCTCCATGCATGAAACCAGTCAAAACTCCGAAACTTACGGATTATCCAAAGAGTCGCCGTTGGTCTGCATGCCCTTGTTCGAAACCAACACTACTTCATTCGATATCTCTTCTCTTTTCTCGTTTAACCCAAAACCAGAACCCGAAAACACGCATCGTGTCATGGACGATTCCATCGCCGCCGTCGTGGGCGAAAACGTTCTTTTCGGTGATAAAAACAAAGTCTCTGATCACTTGACCAAAGAAGGTGGTGTGAAGCGGGGGCGGAAGATGCCGCAGAAGACCGGAGGATTCATGGGAGTGAGAAAACGGCCGTGGGGGAGATGGTCGGCGGAGATAAGAGACAGGATAGGGCGGTGCAGACACTGGTTAGGAACGTTCGACACGGCGGAAGAGGCAGCGCGTGCGTATGACGCGGCGGCGAGGAGGCTTAGAGGGACCAAAGCCAAGACCAATTTCGTGATTCCTCCGCTTTTTCCCAAGGAAATAGCTCAGGCTCAGGAGGATAATAGGATGAGGCAGAAGCAGAAGAAGAAGAAGAAGAAAAAAGTGAGTGTGAGGAAGTGTGTTAAAGTCACATCGGTTGCACAGTTGTTCGATGATGCCAATTTTATAAATTCTTCTAGTATTAAAGGAAATGTGATTAGTTCTATTGATAATCTTGAAAAAATGGGTCTAGAGCTTGATTTGAGTTTAGGGTTGTTGTCTAGGAAGTGA

Protein Analysis

256

Amino Acids

28.83

Weight (kDa)

9.74

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 115 - 164 7.8e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80580
fragaria_vesca FvH4_6g29010
malus_domestica MD17G1219300.v1.1
prunus_persica Prupe.3G094700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133601
rosa_laevigata RLG00000019354
rosa_multiflora Rmu_co8456135.1_g000001
rosa_rugosa Rorug02G0312700
rosa_samantha Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana Rw2G029780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AccII CGCG 2 cut(s) 457, 470
AclI AACGTT 2 cut(s) 252, 431
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 670
AgsI TTSAA 2 cut(s) 38, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 4 cut(s) 12, 57, 545, 736
AluI AGCT 4 cut(s) 12, 57, 545, 736
Alw26I GTCTC 2 cut(s) 283, 390
AlwNI CAGNNNCTG 1 cut(s) 420
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 670
Asp700I GAANNNNTTC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 20, 275
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 1 cut(s) 492
BbsI GAAGAC 2 cut(s) 26, 341
BbvI GCAGC 1 cut(s) 464
BccI CCATC 3 cut(s) 17, 236, 372
BceAI ACGGC 5 cut(s) 97, 221, 352, 380, 456
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 283, 390
BfaI CTAG 3 cut(s) 678, 731, 762
BisI GCNGC 5 cut(s) 234, 329, 453, 471, 474
BlsI GCNGC 5 cut(s) 235, 330, 454, 472, 475
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 493
BmsI GCATC 3 cut(s) 217, 315, 646
BpiI GAAGAC 2 cut(s) 26, 341
Bpu10I CCTNAGC 2 cut(s) 546, 552
Bpu14I TTCGAA 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 368, 534
BsaWI WCCGGW 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 72, 425
BseDI CCNNGG 2 cut(s) 368, 534
BseGI GGATG 1 cut(s) 573
BseMII CTCAG 2 cut(s) 560, 566
BseNI ACTGG 2 cut(s) 72, 425
BseRI GAGGAG 1 cut(s) 493
BseX3I CGGCCG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 433
Bsh1236I CGCG 2 cut(s) 457, 470
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 505
BsmAI GTCTC 2 cut(s) 283, 390
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 559, 565
BspFNI CGCG 2 cut(s) 457, 470
BspLI GGNNCC 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 135
BsrI ACTGG 2 cut(s) 72, 425
BssECI CCNNGG 2 cut(s) 368, 534
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 19, 32, 645
Bst6I CTCTTC 2 cut(s) 169, 441
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 125, 459
BstDEI CTNAG 3 cut(s) 485, 546, 552
BstDSI CCRYGG 1 cut(s) 368
BstEII GGTNACC 1 cut(s) 26
BstF5I GGATG 1 cut(s) 573
BstFNI CGCG 2 cut(s) 457, 470
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 2 cut(s) 283, 390
BstMBI GATC 1 cut(s) 283
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 4 cut(s) 325, 449, 458, 467
BstNSI RCATGY 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 26
BstUI CGCG 2 cut(s) 457, 470
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 2 cut(s) 26, 341
BstZI CGGCCG 1 cut(s) 365
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 368
BtgZI GCGATG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 2 cut(s) 125, 459
CaiI CAGNNNCTG 1 cut(s) 420
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 492
CseI GACGC 1 cut(s) 476
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 5 cut(s) 61, 65, 124, 217, 349
CviJI RGCY 8 cut(s) 12, 57, 367, 484, 500, 545, 551, 736
CviKI_1 RGCY 8 cut(s) 12, 57, 367, 484, 500, 545, 551, 736
DdeI CTNAG 3 cut(s) 485, 546, 552
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 365
EagI CGGCCG 1 cut(s) 365
Eam1104I CTCTTC 2 cut(s) 169, 441
EarI CTCTTC 2 cut(s) 169, 441
EciI GGCGGA 3 cut(s) 334, 401, 458
EclXI CGGCCG 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 534
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 492
Eco52I CGGCCG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 534
EcoT22I ATGCAT 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 5 cut(s) 64, 68, 127, 220, 352
FaiI YATR 7 cut(s) 62, 66, 125, 218, 350, 465, 668
FaqI GGGAC 1 cut(s) 505
FatI CATG 5 cut(s) 60, 64, 123, 216, 348
FauI CCCGC 1 cut(s) 306
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 5 cut(s) 234, 329, 453, 471, 474
FokI GGATG 1 cut(s) 580
Fsp4HI GCNGC 5 cut(s) 234, 329, 453, 471, 474
FspBI CTAG 3 cut(s) 678, 731, 762
GlaI GCGC 1 cut(s) 456
GluI GCNGC 5 cut(s) 234, 329, 453, 471, 474
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 476
HhaI GCGC 1 cut(s) 457
Hin1II CATG 5 cut(s) 64, 68, 127, 220, 352
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HinfI GANTC 4 cut(s) 107, 224, 345, 517
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 20, 275
Hpy188I TCNGA 2 cut(s) 85, 283
Hpy188III TCNNGA 4 cut(s) 514, 554, 716, 731
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 3 cut(s) 19, 32, 645
HpyCH4IV ACGT 2 cut(s) 252, 431
HpyCH4V TGCA 4 cut(s) 64, 123, 414, 641
HpyF10VI GCNNNNNNNGC 4 cut(s) 325, 449, 458, 467
HpyF3I CTNAG 3 cut(s) 485, 546, 552
HpySE526I ACGT 2 cut(s) 252, 431
Hsp92II CATG 5 cut(s) 64, 68, 127, 220, 352
HspAI GCGC 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 7 cut(s) 85, 204, 352, 385, 406, 533, 539
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 3 cut(s) 217, 315, 646
MaeI CTAG 3 cut(s) 678, 731, 762
MaeII ACGT 2 cut(s) 252, 431
MaeIII GTNAC 2 cut(s) 26, 628
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MluCI AATT 3 cut(s) 508, 661, 670
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 9 cut(s) 335, 442, 471, 474, 482, 531, 550, 564, 606
Mph1103I ATGCAT 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 4 cut(s) 53, 180, 624, 684
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 1 cut(s) 339
MvnI CGCG 2 cut(s) 457, 470
MwoI GCNNNNNNNGC 4 cut(s) 325, 449, 458, 467
NdeII GATC 1 cut(s) 283
NlaIII CATG 5 cut(s) 64, 68, 127, 220, 352
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 26, 628
NsiI ATGCAT 1 cut(s) 66
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 135
PaeI GCATGC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 224, 345, 517
PkrI GCNGC 5 cut(s) 235, 330, 454, 472, 475
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 668
Psp1406I AACGTT 2 cut(s) 252, 431
PspEI GGTNACC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 492
PstNI CAGNNNCTG 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 4 cut(s) 53, 180, 624, 684
SatI GCNGC 5 cut(s) 234, 329, 453, 471, 474
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 492
SchI GAGTC 1 cut(s) 116
SetI ASST 7 cut(s) 14, 59, 255, 304, 434, 547, 738
SfaNI GCATC 3 cut(s) 217, 315, 646
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 353
SphI GCATGC 1 cut(s) 127
Sse9I AATT 3 cut(s) 508, 661, 670
SspI AATATT 1 cut(s) 41
SspMI CTAG 3 cut(s) 678, 731, 762
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 19, 32, 645
TaiI ACGT 2 cut(s) 255, 434
TaqI TCGA 4 cut(s) 135, 156, 435, 651
TasI AATT 3 cut(s) 508, 661, 670
TauI GCSGC 4 cut(s) 236, 331, 473, 476
TfiI GAWTC 3 cut(s) 224, 345, 517
Tru1I TTAA 4 cut(s) 53, 180, 624, 684
Tru9I TTAA 4 cut(s) 53, 180, 624, 684
TscAI CASTG 1 cut(s) 425
TseFI GTSAC 2 cut(s) 26, 628
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 2 cut(s) 26, 628
TspDTI ATGAA 3 cut(s) 81, 141, 337
TspGWI ACGGA 3 cut(s) 34, 39, 108
TspRI CASTG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 492
XapI RAATTY 1 cut(s) 670
XbaI TCTAGA 1 cut(s) 730
XceI RCATGY 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 3 cut(s) 678, 731, 762
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.