Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0017187

Physical Location & Seq

Genomic Coordinates Forward (+)

26705642 .. 26706508

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1219300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAACAACCAAACCCTGGCCACCGTTCCGTTATACAGTAACCCCGTAATGTTTCATGCACAACCAGAAACGTTTCGGTTTCTAACTGAGACGAACTCACTTTATGAGTCTTACTTGAGGAAGGCCCACTTCTCGGATTCCACCATTTCAATCCCAACCCAGCTGAAGAACTTCAACCAACCCAGTCATACCAATATTTCGGCCGAAGTTCCGCTTGTTGGTGTTATTGATAAAGGACCGGAATCCCAAGCCCAAGCACCTCCGGTTCTTGATGGAATCGCTGCTGTTGTAGGGCAACATGTCCTCTTTGGTAAAAAAAATAGCAATACCTCATATAATGGTGAAAGCTCTCTAATTCCGGATTTCGGCTACGTTTCGGAGCGTCTTGGTGCGGCCGAAACTTCGATAAAACATGCTGATAATAAGAAGAGTAACTTTCCGGTGCAAAAGAACTATCGGGGAGTGAGGAAGAGGCCATGGGGAAGGTGGTCCGCGGAGATAAGGGACCGTATCGGGCGGTGCCGTCACTGGCTGGGGACTTTCGACACGGCAGAAGAAGCTGCACGTGCGTACGACGCGGCGGCGAGGAGGCTGAGAGGGGCAAAGGCCAGGACCAACTTTGAAATCCCGTCTGTGTTTCCCCTCTCGTTGCATTGTTCACCACCTTCTTCTTCGGAGGCCAAGAGAGTGAGAAGTGCTAAGAGGCCTCCCAAGGGTTCGAAAAGCAACAGAAAATGCTCAGTGGTGACCAGTGTGGCTCATTTGTTTAGTGAGGCTCCCACTGATCTTAGAAGTAGTCAAGTTAAAATTCGGAATGTGGAGCTTGATTTGAAGATTGGAGTTGGAGTGAGTTTTAATGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

289

Amino Acids

31.82

Weight (kDa)

9.91

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	151 - 200	5.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80580
fragaria_vesca	FvH4_6g29010
malus_domestica	MD17G1219300.v1.1
prunus_persica	Prupe.3G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133601
rosa_laevigata	RLG00000019354
rosa_multiflora	Rmu_co8456135.1_g000001
rosa_rugosa	Rorug02G0312700
rosa_samantha	Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana	Rw2G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	519
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccII	CGCG	2 cut(s)	494, 578
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	7 cut(s)	212, 392, 492, 494, 517, 578, 581
AclI	AACGTT	1 cut(s)	71
AcoI	YGGCCR	3 cut(s)	18, 201, 393
AcsI	RAATTY	1 cut(s)	807
AcuI	CTGAAG	1 cut(s)	185
AcvI	CACGTG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	5 cut(s)	16, 133, 218, 365, 713
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	150, 175, 623, 832
AjnI	CCWGG	2 cut(s)	15, 608
AluBI	AGCT	4 cut(s)	163, 348, 560, 823
AluI	AGCT	4 cut(s)	163, 348, 560, 823
Alw26I	GTCTC	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	8 cut(s)	18, 123, 201, 393, 473, 606, 678, 704
ApeKI	GCWGC	2 cut(s)	281, 560
ApoI	RAATTY	1 cut(s)	807
Asp700I	GAANNNNTTC	2 cut(s)	72, 170
AspS9I	GGNCC	5 cut(s)	124, 236, 489, 505, 612
AsuHPI	GGTGA	3 cut(s)	353, 651, 757
AsuII	TTCGAA	1 cut(s)	719
AvaII	GGWCC	4 cut(s)	236, 489, 505, 612
BalI	TGGCCA	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	519
BbrPI	CACGTG	1 cut(s)	566
BbvI	GCAGC	2 cut(s)	268, 547
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	507, 564
BciT130I	CCWGG	2 cut(s)	17, 610
BcoDI	GTCTC	1 cut(s)	83
BisI	GCNGC	5 cut(s)	282, 393, 561, 579, 582
BlsI	GCNGC	5 cut(s)	283, 394, 562, 580, 583
Bme1390I	CCNGG	2 cut(s)	17, 610
Bme18I	GGWCC	4 cut(s)	236, 489, 505, 612
BmgT120I	GGNCC	5 cut(s)	124, 236, 489, 505, 612
BmiI	GGNNCC	3 cut(s)	506, 521, 777
BmrFI	CCNGG	2 cut(s)	17, 610
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu14I	TTCGAA	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	566
BsaJI	CCNNGG	4 cut(s)	15, 476, 492, 711
BsaWI	WCCGGW	4 cut(s)	238, 262, 358, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	831, 861
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 133, 218, 365, 713
Bse1I	ACTGG	3 cut(s)	183, 533, 750
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	17, 610
BseDI	CCNNGG	4 cut(s)	15, 476, 492, 711
BseLI	CCNNNNNNNGG	5 cut(s)	16, 133, 218, 365, 713
BseMII	CTCAG	3 cut(s)	78, 584, 753
BseNI	ACTGG	3 cut(s)	183, 533, 750
BseRI	GAGGAG	1 cut(s)	601
BseX3I	CGGCCG	2 cut(s)	201, 393
BseXI	GCAGC	2 cut(s)	268, 547
BseYI	CCCAGC	2 cut(s)	159, 532
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	2 cut(s)	494, 578
Bsh1285I	CGRYCG	2 cut(s)	204, 396
BshFI	GGCC	8 cut(s)	20, 125, 203, 395, 475, 608, 680, 706
BshNI	GGYRCC	1 cut(s)	519
BsiEI	CGRYCG	2 cut(s)	204, 396
BsiSI	CCGG	4 cut(s)	239, 263, 359, 440
BsiWI	CGTACG	1 cut(s)	570
BslFI	GGGAC	2 cut(s)	518, 550
BslI	CCNNNNNNNGG	5 cut(s)	16, 133, 218, 365, 713
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	518, 550
BsnI	GGCC	8 cut(s)	20, 125, 203, 395, 475, 608, 680, 706
Bsp119I	TTCGAA	1 cut(s)	719
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	784
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	7 cut(s)	212, 392, 492, 494, 517, 578, 581
BspANI	GGCC	8 cut(s)	20, 125, 203, 395, 475, 608, 680, 706
BspCNI	CTCAG	3 cut(s)	79, 585, 752
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	2 cut(s)	494, 578
BspLI	GGNNCC	3 cut(s)	506, 521, 777
BspT104I	TTCGAA	1 cut(s)	719
BspT107I	GGYRCC	1 cut(s)	519
BsrI	ACTGG	3 cut(s)	183, 533, 750
BssECI	CCNNGG	4 cut(s)	15, 476, 492, 711
BssMI	GATC	1 cut(s)	784
BssT1I	CCWWGG	2 cut(s)	476, 711
Bst2UI	CCWGG	2 cut(s)	17, 610
Bst4CI	ACNGT	3 cut(s)	25, 38, 509
Bst6I	CTCTTC	2 cut(s)	422, 464
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	719
BstDEI	CTNAG	5 cut(s)	87, 593, 699, 739, 788
BstDSI	CCRYGG	2 cut(s)	476, 492
BstEII	GGTNACC	1 cut(s)	745
BstFNI	CGCG	2 cut(s)	494, 578
BstKTI	GATC	1 cut(s)	787
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	784
BstMCI	CGRYCG	2 cut(s)	204, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 566, 575
BstNI	CCWGG	2 cut(s)	17, 610
BstNSI	RCATGY	2 cut(s)	302, 416
BstPI	GGTNACC	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	15, 608
BstUI	CGCG	2 cut(s)	494, 578
BstV1I	GCAGC	2 cut(s)	268, 547
BstZI	CGGCCG	2 cut(s)	201, 393
BsuRI	GGCC	8 cut(s)	20, 125, 203, 395, 475, 608, 680, 706
BtgI	CCRYGG	2 cut(s)	476, 492
BtsIMutI	CAGTG	4 cut(s)	526, 747, 757, 780
Cfr13I	GGNCC	5 cut(s)	124, 236, 489, 505, 612
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	2 cut(s)	371, 584
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	4 cut(s)	56, 299, 413, 477
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	5 cut(s)	87, 593, 699, 739, 788
DpnI	GATC	1 cut(s)	786
DpnII	GATC	1 cut(s)	784
EaeI	YGGCCR	3 cut(s)	18, 201, 393
EagI	CGGCCG	2 cut(s)	201, 393
Eam1104I	CTCTTC	2 cut(s)	422, 464
EarI	CTCTTC	2 cut(s)	422, 464
EclXI	CGGCCG	2 cut(s)	201, 393
Eco130I	CCWWGG	2 cut(s)	476, 711
Eco147I	AGGCCT	1 cut(s)	706
Eco47I	GGWCC	4 cut(s)	236, 489, 505, 612
Eco52I	CGGCCG	2 cut(s)	201, 393
Eco57I	CTGAAG	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	566
Eco91I	GGTNACC	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	15, 608
EcoT14I	CCWWGG	2 cut(s)	476, 711
ErhI	CCWWGG	2 cut(s)	476, 711
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	4 cut(s)	59, 302, 416, 480
FaiI	YATR	9 cut(s)	34, 57, 105, 189, 300, 334, 336, 414, 478
FalI	AAGNNNNNCTT	6 cut(s)	113, 145, 198, 230, 419, 451
FaqI	GGGAC	2 cut(s)	518, 550
FatI	CATG	4 cut(s)	55, 298, 412, 476
Fnu4HI	GCNGC	5 cut(s)	282, 393, 561, 579, 582
Fsp4HI	GCNGC	5 cut(s)	282, 393, 561, 579, 582
GluI	GCNGC	5 cut(s)	282, 393, 561, 579, 582
GsaI	CCCAGC	2 cut(s)	163, 536
HaeIII	GGCC	8 cut(s)	20, 125, 203, 395, 475, 608, 680, 706
HapII	CCGG	4 cut(s)	239, 263, 359, 440
HgaI	GACGC	2 cut(s)	371, 584
Hin1II	CATG	4 cut(s)	59, 302, 416, 480
HinfI	GANTC	4 cut(s)	107, 137, 242, 276
HpaII	CCGG	4 cut(s)	239, 263, 359, 440
HphI	GGTGA	3 cut(s)	353, 651, 757
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	4 cut(s)	136, 379, 676, 813
Hpy188III	TCNNGA	2 cut(s)	269, 359
Hpy8I	GTNNAC	1 cut(s)	659
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	3 cut(s)	115, 477, 675
HpyCH4III	ACNGT	3 cut(s)	25, 38, 509
HpyCH4IV	ACGT	3 cut(s)	71, 372, 565
HpyCH4V	TGCA	4 cut(s)	59, 445, 563, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 566, 575
HpyF3I	CTNAG	5 cut(s)	87, 593, 699, 739, 788
HpySE526I	ACGT	3 cut(s)	71, 372, 565
Hsp92II	CATG	4 cut(s)	59, 302, 416, 480
Kpn2I	TCCGGA	1 cut(s)	358
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	1 cut(s)	784
LmnI	GCTCC	3 cut(s)	379, 781, 820
Lsp1109I	GCAGC	2 cut(s)	268, 547
MaeII	ACGT	3 cut(s)	71, 372, 565
MaeIII	GTNAC	4 cut(s)	38, 431, 524, 745
MalI	GATC	1 cut(s)	786
MboI	GATC	1 cut(s)	784
MboII	GAAGA	7 cut(s)	178, 439, 481, 566, 660, 663, 844
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	3 cut(s)	354, 807, 862
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	823
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	358
MroXI	GAANNNNTTC	2 cut(s)	72, 170
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	3 cut(s)	804, 855, 865
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	163, 494
MspI	CCGG	4 cut(s)	239, 263, 359, 440
MspR9I	CCNGG	2 cut(s)	17, 610
MvaI	CCWGG	2 cut(s)	17, 610
MvnI	CGCG	2 cut(s)	494, 578
MwoI	GCNNNNNNNGC	3 cut(s)	557, 566, 575
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	1 cut(s)	784
NlaIII	CATG	4 cut(s)	59, 302, 416, 480
NlaIV	GGNNCC	3 cut(s)	506, 521, 777
NmuCI	GTSAC	2 cut(s)	524, 745
NspI	RCATGY	2 cut(s)	302, 416
NspV	TTCGAA	1 cut(s)	719
PceI	AGGCCT	1 cut(s)	706
PciI	ACATGT	1 cut(s)	298
PdmI	GAANNNNTTC	2 cut(s)	72, 170
PfeI	GAWTC	3 cut(s)	137, 242, 276
Pfl23II	CGTACG	1 cut(s)	570
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	5 cut(s)	283, 394, 562, 580, 583
PleI	GAGTC	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	566
PscI	ACATGT	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	15, 608
PspCI	CACGTG	1 cut(s)	566
PspEI	GGTNACC	1 cut(s)	745
PspFI	CCCAGC	2 cut(s)	159, 532
PspGI	CCWGG	2 cut(s)	15, 608
PspLI	CGTACG	1 cut(s)	570
PspN4I	GGNNCC	3 cut(s)	506, 521, 777
PspPI	GGNCC	5 cut(s)	124, 236, 489, 505, 612
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SacII	CCGCGG	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	804, 855, 865
SatI	GCNGC	5 cut(s)	282, 393, 561, 579, 582
Sau3AI	GATC	1 cut(s)	784
Sau96I	GGNCC	5 cut(s)	124, 236, 489, 505, 612
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	17, 610
Sfr303I	CCGCGG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	719
SgrBI	CCGCGG	1 cut(s)	495
SinI	GGWCC	4 cut(s)	236, 489, 505, 612
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	354, 807, 862
SseBI	AGGCCT	1 cut(s)	706
SsiI	CCGC	7 cut(s)	212, 392, 492, 494, 517, 578, 581
SspI	AATATT	1 cut(s)	196
StuI	AGGCCT	1 cut(s)	706
StyD4I	CCNGG	2 cut(s)	15, 608
StyI	CCWWGG	2 cut(s)	476, 711
TaaI	ACNGT	3 cut(s)	25, 38, 509
TaiI	ACGT	3 cut(s)	74, 375, 568
TaqI	TCGA	3 cut(s)	404, 543, 719
TasI	AATT	3 cut(s)	354, 807, 862
TauI	GCSGC	3 cut(s)	395, 581, 584
TfiI	GAWTC	3 cut(s)	137, 242, 276
Tru1I	TTAA	3 cut(s)	804, 855, 865
Tru9I	TTAA	3 cut(s)	804, 855, 865
TscAI	CASTG	4 cut(s)	533, 747, 757, 787
TseFI	GTSAC	2 cut(s)	524, 745
TseI	GCWGC	2 cut(s)	281, 560
Tsp45I	GTSAC	2 cut(s)	524, 745
TspDTI	ATGAA	2 cut(s)	17, 44
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	4 cut(s)	533, 747, 757, 787
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	4 cut(s)	236, 489, 505, 612
XapI	RAATTY	1 cut(s)	807
XceI	RCATGY	2 cut(s)	302, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XmnI	GAANNNNTTC	2 cut(s)	72, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.