Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8456135.1

Orthogroup ID

OG0017187

Physical Location & Seq

Genomic Coordinates Forward (+)

657 .. 1547

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8456135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgagttttaaagctacagataccgttccgttcctccggcatcccgtttcattccgttcacccaacacgtttcggttactaactgaagctgcttcattctacgagtcttacttaagtggccagttctcagttcctccgccttcggtgcctaaccagctgaagctcgttaaccaaccaagtcattcccatgtttcggccgacgatactccactgttggcagttaatgccaacgttgccgagtccgaaaccgaaccgcctccggttctcgacggaatcgccgccgtagtgggggaacacgttctgttcggaggcaaaaaggctgctaacaacgaagtcaacaccgagaacacccaagtttccgatttcgtcaacctctcgctgcgttttggcggttccgaaacttcgaaaacagccgccgataaggacatgggaaacgtttcggtgcagaagaactacaggggagtgaggaagagaccgtggggaaggttttcggcggagataagggaccgtatcgggagatgcagacactggctggggactttcgacacggccgaggaggcggcacgtgcgtacgactcggcggcaaggaggctgagaggggcaaaagctcagaccaactttcaaatcccatcggtgtttccagtctcgtatgactcggcttcttcatcagcttctgttaataataatgcggcggagaaaaagagaaaagtgagtagaagtcgcggagctaaacccaaatctgtgagggagaccaattcagtggtggtaacttcagtggctcaactgtttagtcagactccaattcccagaacttctgttattgggaatcggaatccgaatctggagcttgatttgaagctgggcatgaactttggttgcagaggaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

296

Amino Acids

32.23

Weight (kDa)

9.83

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80580
fragaria_vesca	FvH4_6g29010
malus_domestica	MD17G1219300.v1.1
prunus_persica	Prupe.3G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133601
rosa_laevigata	RLG00000019354
rosa_multiflora	Rmu_co8456135.1_g000001
rosa_rugosa	Rorug02G0312700
rosa_samantha	Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana	Rw2G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccII	CGCG	1 cut(s)	723
AclI	AACGTT	2 cut(s)	231, 435
AcoI	YGGCCR	3 cut(s)	118, 195, 549
AcuI	CTGAAG	3 cut(s)	105, 179, 756
AcvI	CACGTG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	2 cut(s)	193, 288
AflII	CTTAAG	1 cut(s)	112
AflIII	ACRYGT	2 cut(s)	66, 295
AgsI	TTSAA	2 cut(s)	623, 856
Alw26I	GTCTC	3 cut(s)	466, 649, 743
AlwNI	CAGNNNCTG	2 cut(s)	528, 674
AoxI	GGCC	3 cut(s)	118, 195, 549
ApeKI	GCWGC	3 cut(s)	89, 320, 379
Asp700I	GAANNNNTTC	3 cut(s)	297, 436, 487
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	51
AsuII	TTCGAA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	76, 307, 366
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	2 cut(s)	266, 564
BcoDI	GTCTC	3 cut(s)	466, 649, 743
BfaI	CTAG	1 cut(s)	889
BfmI	CTRYAG	2 cut(s)	15, 454
BfrI	CTTAAG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	557
BisI	GCNGC	8 cut(s)	90, 279, 321, 380, 414, 561, 582, 690
BlsI	GCNGC	8 cut(s)	91, 280, 322, 381, 415, 562, 583, 691
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	3 cut(s)	147, 394, 506
BmsI	GCATC	2 cut(s)	49, 509
BpmI	CTGGAG	1 cut(s)	863
Bpu14I	TTCGAA	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	566
BsaI	GGTCTC	2 cut(s)	466, 743
BsaJI	CCNNGG	2 cut(s)	476, 552
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 288
Bse1I	ACTGG	3 cut(s)	121, 533, 641
BseDI	CCNNGG	2 cut(s)	476, 552
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	2 cut(s)	193, 288
BseMII	CTCAG	3 cut(s)	141, 584, 623
BseNI	ACTGG	3 cut(s)	121, 533, 641
BseRI	GAGGAG	1 cut(s)	569
BseX3I	CGGCCG	2 cut(s)	195, 549
BseXI	GCAGC	3 cut(s)	76, 307, 366
BseYI	CCCAGC	2 cut(s)	532, 859
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	723
Bsh1285I	CGRYCG	2 cut(s)	198, 552
BshFI	GGCC	3 cut(s)	120, 197, 551
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	2 cut(s)	198, 552
BsiSI	CCGG	2 cut(s)	37, 260
BsiWI	CGTACG	1 cut(s)	570
BslFI	GGGAC	2 cut(s)	518, 550
BslI	CCNNNNNNNGG	2 cut(s)	193, 288
BsmAI	GTCTC	3 cut(s)	466, 649, 743
BsmFI	GGGAC	2 cut(s)	518, 550
BsnI	GGCC	3 cut(s)	120, 197, 551
Bso31I	GGTCTC	2 cut(s)	466, 743
Bsp119I	TTCGAA	1 cut(s)	404
BspANI	GGCC	3 cut(s)	120, 197, 551
BspCNI	CTCAG	3 cut(s)	140, 585, 622
BspFNI	CGCG	1 cut(s)	723
BspLI	GGNNCC	3 cut(s)	147, 394, 506
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	112
BspTNI	GGTCTC	2 cut(s)	466, 743
BsrI	ACTGG	3 cut(s)	121, 533, 641
BssECI	CCNNGG	2 cut(s)	476, 552
Bst4CI	ACNGT	5 cut(s)	25, 213, 477, 509, 786
Bst6I	CTCTTC	1 cut(s)	464
BstAFI	CTTAAG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	127, 593, 609
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	723
BstMAI	GTCTC	3 cut(s)	466, 649, 743
BstMCI	CGRYCG	2 cut(s)	198, 552
BstMWI	GCNNNNNNNGC	7 cut(s)	145, 154, 224, 233, 557, 566, 885
BstSFI	CTRYAG	2 cut(s)	15, 454
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	3 cut(s)	76, 307, 366
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstZI	CGGCCG	2 cut(s)	195, 549
BsuRI	GGCC	3 cut(s)	120, 197, 551
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	4 cut(s)	209, 526, 765, 780
CaiI	CAGNNNCTG	2 cut(s)	528, 674
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	3 cut(s)	188, 427, 865
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	3 cut(s)	127, 593, 609
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	3 cut(s)	118, 195, 549
EagI	CGGCCG	2 cut(s)	195, 549
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	3 cut(s)	126, 509, 707
EclXI	CGGCCG	2 cut(s)	195, 549
Eco31I	GGTCTC	2 cut(s)	466, 743
Eco47I	GGWCC	1 cut(s)	505
Eco52I	CGGCCG	2 cut(s)	195, 549
Eco57I	CTGAAG	3 cut(s)	105, 179, 756
Eco72I	CACGTG	1 cut(s)	566
FaeI	CATG	3 cut(s)	191, 430, 868
FaiI	YATR	4 cut(s)	189, 428, 651, 866
FaqI	GGGAC	2 cut(s)	518, 550
FatI	CATG	3 cut(s)	187, 426, 864
Fnu4HI	GCNGC	8 cut(s)	90, 279, 321, 380, 414, 561, 582, 690
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	8 cut(s)	90, 279, 321, 380, 414, 561, 582, 690
FspBI	CTAG	1 cut(s)	889
GluI	GCNGC	8 cut(s)	90, 279, 321, 380, 414, 561, 582, 690
GsaI	CCCAGC	2 cut(s)	536, 863
GsuI	CTGGAG	1 cut(s)	863
HaeIII	GGCC	3 cut(s)	120, 197, 551
HapII	CCGG	2 cut(s)	37, 260
Hin1II	CATG	3 cut(s)	191, 430, 868
HincII	GTYRAC	3 cut(s)	169, 337, 370
HindII	GTYRAC	3 cut(s)	169, 337, 370
HinfI	GANTC	9 cut(s)	104, 239, 273, 575, 653, 796, 826, 832, 838
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	37, 260
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	4 cut(s)	59, 169, 337, 370
Hpy188I	TCNGA	8 cut(s)	244, 308, 361, 397, 612, 795, 831, 837
Hpy188III	TCNNGA	3 cut(s)	266, 514, 842
Hpy8I	GTNNAC	4 cut(s)	59, 169, 337, 370
Hpy99I	CGWCG	2 cut(s)	203, 272
HpyAV	CCTTC	2 cut(s)	150, 477
HpyCH4III	ACNGT	5 cut(s)	25, 213, 477, 509, 786
HpyCH4IV	ACGT	5 cut(s)	68, 231, 297, 435, 565
HpyCH4V	TGCA	3 cut(s)	445, 522, 879
HpyF10VI	GCNNNNNNNGC	7 cut(s)	145, 154, 224, 233, 557, 566, 885
HpyF3I	CTNAG	3 cut(s)	127, 593, 609
HpySE526I	ACGT	5 cut(s)	68, 231, 297, 435, 565
Hsp92II	CATG	3 cut(s)	191, 430, 868
KspAI	GTTAAC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	725, 844
Lsp1109I	GCAGC	3 cut(s)	76, 307, 366
LweI	GCATC	2 cut(s)	49, 509
MaeI	CTAG	1 cut(s)	889
MaeII	ACGT	5 cut(s)	68, 231, 297, 435, 565
MaeIII	GTNAC	2 cut(s)	75, 766
MboII	GAAGA	3 cut(s)	460, 481, 654
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	754, 801
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	5 cut(s)	113, 248, 569, 647, 790
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	3 cut(s)	297, 436, 487
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	5 cut(s)	9, 113, 168, 222, 678
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	157
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	2 cut(s)	37, 260
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	7 cut(s)	145, 154, 224, 233, 557, 566, 885
NlaIII	CATG	3 cut(s)	191, 430, 868
NlaIV	GGNNCC	3 cut(s)	147, 394, 506
NmeAIII	GCCGAG	4 cut(s)	262, 557, 577, 635
NspV	TTCGAA	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PdmI	GAANNNNTTC	3 cut(s)	297, 436, 487
PfeI	GAWTC	4 cut(s)	273, 826, 832, 838
Pfl23II	CGTACG	1 cut(s)	570
PkrI	GCNGC	8 cut(s)	91, 280, 322, 381, 415, 562, 583, 691
PleI	GAGTC	5 cut(s)	112, 247, 569, 647, 790
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	5 cut(s)	112, 247, 569, 647, 790
Ppu21I	YACGTR	1 cut(s)	566
Psp1406I	AACGTT	2 cut(s)	231, 435
PspCI	CACGTG	1 cut(s)	566
PspFI	CCCAGC	2 cut(s)	532, 859
PspLI	CGTACG	1 cut(s)	570
PspN4I	GGNNCC	3 cut(s)	147, 394, 506
PspPI	GGNCC	1 cut(s)	505
PstNI	CAGNNNCTG	2 cut(s)	528, 674
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	5 cut(s)	9, 113, 168, 222, 678
SatI	GCNGC	8 cut(s)	90, 279, 321, 380, 414, 561, 582, 690
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	5 cut(s)	113, 248, 569, 647, 790
SfaNI	GCATC	2 cut(s)	49, 509
SfcI	CTRYAG	2 cut(s)	15, 454
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	754, 801
SspMI	CTAG	1 cut(s)	889
TaaI	ACNGT	5 cut(s)	25, 213, 477, 509, 786
TaiI	ACGT	5 cut(s)	71, 234, 300, 438, 568
TaqI	TCGA	3 cut(s)	267, 404, 543
TasI	AATT	2 cut(s)	754, 801
TauI	GCSGC	5 cut(s)	281, 416, 563, 584, 692
TfiI	GAWTC	4 cut(s)	273, 826, 832, 838
Tru1I	TTAA	5 cut(s)	9, 113, 168, 222, 678
Tru9I	TTAA	5 cut(s)	9, 113, 168, 222, 678
TscAI	CASTG	4 cut(s)	216, 533, 765, 780
TseI	GCWGC	3 cut(s)	89, 320, 379
TspDTI	ATGAA	4 cut(s)	39, 84, 654, 881
TspGWI	ACGGA	3 cut(s)	18, 44, 285
TspRI	CASTG	4 cut(s)	216, 533, 765, 780
Vha464I	CTTAAG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XmnI	GAANNNNTTC	3 cut(s)	297, 436, 487
XspI	CTAG	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.