Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017187

Physical Location & Seq

Genomic Coordinates Forward (+)

37838192 .. 37839695

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGCCCCTCCGATTTGGCCTATTATTGCTGGTCAATTCTGCGATGCTGTTAATAATTGTTACAGCTCAAAACACGCATTGGCTTCCCGCCACAGCCACCTGGTACGGCAGCCCCGAAGGTGACGGCAGTGACGGCGGGGCATGTGGGTACGGATCCTTAGTGGACGTGAAGCCATTGAGAGCGAGAGTGGGCGCAGTGAGCCCGGTGCTATTCAAGAACGGCGAGGGTTGCGGCGCATGTTACAAAGTCAAGTGTTTGGACAAGTCCATCTGCTCCAGGCGAGCCGTCACCATAATCGTCACCGACGAGTGCCCCGGTTGCTCAGGTGGGCCCCATTTCGACCTCAGTGGCGCAGCCTTTGGCCGCATGGCTATTGCCGGTGAGCATGGTCTGCTCAGAAACCGAGGCGAACTCTCCGTTCTTTACCGACGGACACCATGTAAATATCCTGGGAAGCAGGTGGCCTTCCATGTGAATGAAGGTTCAACCAACTATTATCTCTCACTTCTGGTAGAGTTTGAAGATGGAGATGGAGATGTCGGATCAATGCATATAAGACAAGCAAGTTCTAGTGAGTGGGTAGCGATGAGGCATGTCTGGGGAGCAAGTTGGTGCATCGATGGAGGACCTTTGAGAGGGCCATTCTCAGTGAAGATAACCACACTATCAACAGCTAGAAGCCTCACCGCCCGGGATGTCATTCCAAGCAATTGGTCTCCCAAAGCCACTTACACCTCTCGCCTGAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

251

Amino Acids

27.02

Weight (kDa)

8.73

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	66 - 135	1.2e-15	Lytic transglycolase
Expansin_C	PF01357	155 - 236	8.2e-25	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80580
fragaria_vesca	FvH4_6g29010
malus_domestica	MD17G1219300.v1.1
prunus_persica	Prupe.3G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133601
rosa_laevigata	RLG00000019354
rosa_multiflora	Rmu_co8456135.1_g000001
rosa_rugosa	Rorug02G0312700
rosa_samantha	Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana	Rw2G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	451
AciI	CCGC	5 cut(s)	90, 138, 234, 367, 690
AclWI	GGATC	3 cut(s)	150, 163, 553
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	748
AfaI	GTAC	2 cut(s)	107, 152
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	3 cut(s)	217, 489, 524
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	3 cut(s)	101, 278, 451
AluBI	AGCT	2 cut(s)	68, 677
AluI	AGCT	2 cut(s)	68, 677
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	3 cut(s)	150, 163, 553
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	5 cut(s)	19, 332, 364, 465, 641
ApaI	GGGCCC	1 cut(s)	336
ApeKI	GCWGC	3 cut(s)	4, 111, 356
ApoI	RAATTY	1 cut(s)	748
AspLEI	GCGC	3 cut(s)	197, 239, 356
AspS9I	GGNCC	4 cut(s)	332, 333, 629, 641
AsuC2I	CCSGG	4 cut(s)	206, 318, 694, 695
AsuHPI	GGTGA	5 cut(s)	134, 283, 295, 395, 679
AvaI	CYCGRG	1 cut(s)	693
AvaII	GGWCC	1 cut(s)	629
BaeGI	GKGCMC	2 cut(s)	317, 336
BamHI	GGATCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	206, 336
BbvI	GCAGC	3 cut(s)	16, 123, 368
BccI	CCATC	4 cut(s)	278, 521, 527, 617
BceAI	ACGGC	5 cut(s)	124, 142, 151, 238, 272
BciT130I	CCWGG	3 cut(s)	103, 280, 453
BcnI	CCSGG	4 cut(s)	206, 318, 694, 695
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	573, 678
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	5 cut(s)	5, 112, 235, 357, 367
BlsI	GCNGC	5 cut(s)	6, 113, 236, 358, 368
Bme1390I	CCNGG	7 cut(s)	103, 206, 280, 318, 453, 694, 695
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	693
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	4 cut(s)	332, 333, 629, 641
BmiI	GGNNCC	3 cut(s)	157, 334, 335
BmrFI	CCNGG	7 cut(s)	103, 206, 280, 318, 453, 694, 695
BmsI	GCATC	2 cut(s)	36, 627
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	325
BpuMI	CCSGG	4 cut(s)	206, 318, 694, 695
Bsa29I	ATCGAT	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	4 cut(s)	316, 406, 452, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse118I	RCCGGY	1 cut(s)	380
BseBI	CCWGG	3 cut(s)	103, 280, 453
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	4 cut(s)	316, 406, 452, 693
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	4 cut(s)	339, 361, 412, 663
BseSI	GKGCMC	2 cut(s)	317, 336
BseXI	GCAGC	3 cut(s)	16, 123, 368
BshFI	GGCC	5 cut(s)	21, 334, 366, 467, 643
BshVI	ATCGAT	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	693
BsiSI	CCGG	4 cut(s)	206, 318, 381, 694
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	723
BsnI	GGCC	5 cut(s)	21, 334, 366, 467, 643
Bso31I	GGTCTC	1 cut(s)	723
BsoBI	CYCGRG	1 cut(s)	693
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	206, 317, 336
Bsp143I	GATC	2 cut(s)	155, 545
BspACI	CCGC	5 cut(s)	90, 138, 234, 367, 690
BspANI	GGCC	5 cut(s)	21, 334, 366, 467, 643
BspCNI	CTCAG	4 cut(s)	338, 360, 411, 662
BspDI	ATCGAT	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	157, 334, 335
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	3 cut(s)	150, 163, 553
BspTNI	GGTCTC	1 cut(s)	723
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	4 cut(s)	316, 406, 452, 693
BssMI	GATC	2 cut(s)	155, 545
Bst2UI	CCWGG	3 cut(s)	103, 280, 453
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	5 cut(s)	160, 325, 347, 398, 649
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstF5I	GGATG	1 cut(s)	703
BstHHI	GCGC	3 cut(s)	197, 239, 356
BstKTI	GATC	2 cut(s)	158, 548
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	2 cut(s)	155, 545
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 201, 231, 321, 394
BstNI	CCWGG	3 cut(s)	103, 280, 453
BstNSI	RCATGY	3 cut(s)	147, 243, 599
BstSCI	CCNGG	7 cut(s)	101, 204, 278, 316, 451, 692, 693
BstSLI	GKGCMC	2 cut(s)	317, 336
BstV1I	GCAGC	3 cut(s)	16, 123, 368
BstX2I	RGATCY	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	621
BsuRI	GGCC	5 cut(s)	21, 334, 366, 467, 643
BsuTUI	ATCGAT	1 cut(s)	621
BtgZI	GCGATG	2 cut(s)	59, 602
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	2 cut(s)	136, 204
BtsIMutI	CAGTG	4 cut(s)	136, 204, 355, 657
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	3 cut(s)	197, 239, 356
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	4 cut(s)	332, 333, 629, 641
Cfr9I	CCCGGG	1 cut(s)	693
ClaI	ATCGAT	1 cut(s)	621
CsiI	ACCWGGT	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	106, 151
CviAII	CATG	7 cut(s)	144, 240, 370, 389, 441, 473, 596
CviQI	GTAC	2 cut(s)	106, 151
DdeI	CTNAG	5 cut(s)	160, 325, 347, 398, 649
DpnI	GATC	2 cut(s)	157, 547
DpnII	GATC	2 cut(s)	155, 545
EaeI	YGGCCR	1 cut(s)	364
Eco24I	GRGCYC	2 cut(s)	206, 336
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	693
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoO109I	RGGNCCY	2 cut(s)	333, 629
EcoRII	CCWGG	3 cut(s)	101, 278, 451
EcoT22I	ATGCAT	1 cut(s)	555
EcoT38I	GRGCYC	2 cut(s)	206, 336
FaeI	CATG	7 cut(s)	147, 243, 373, 392, 444, 476, 599
FatI	CATG	7 cut(s)	143, 239, 369, 388, 440, 472, 595
FauI	CCCGC	2 cut(s)	97, 131
Fnu4HI	GCNGC	5 cut(s)	5, 112, 235, 357, 367
FokI	GGATG	1 cut(s)	710
FriOI	GRGCYC	2 cut(s)	206, 336
Fsp4HI	GCNGC	5 cut(s)	5, 112, 235, 357, 367
FspBI	CTAG	2 cut(s)	573, 678
GlaI	GCGC	3 cut(s)	196, 238, 355
GluI	GCNGC	5 cut(s)	5, 112, 235, 357, 367
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	5 cut(s)	21, 334, 366, 467, 643
HapII	CCGG	4 cut(s)	206, 318, 381, 694
HhaI	GCGC	3 cut(s)	197, 239, 356
Hin1II	CATG	7 cut(s)	147, 243, 373, 392, 444, 476, 599
Hin6I	GCGC	3 cut(s)	195, 237, 354
HinP1I	GCGC	3 cut(s)	195, 237, 354
HpaII	CCGG	4 cut(s)	206, 318, 381, 694
HphI	GGTGA	5 cut(s)	134, 283, 295, 395, 679
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	14, 401, 545
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	311, 435
HpyAV	CCTTC	3 cut(s)	113, 476, 478
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	4, 553, 618
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 201, 231, 321, 394
HpyF3I	CTNAG	5 cut(s)	160, 325, 347, 398, 649
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	7 cut(s)	147, 243, 373, 392, 444, 476, 599
HspAI	GCGC	3 cut(s)	195, 237, 354
Kzo9I	GATC	2 cut(s)	155, 545
LmnI	GCTCC	2 cut(s)	281, 605
Lsp1109I	GCAGC	3 cut(s)	16, 123, 368
LweI	GCATC	2 cut(s)	36, 627
MabI	ACCWGGT	1 cut(s)	101
MaeI	CTAG	2 cut(s)	573, 678
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	6 cut(s)	61, 122, 131, 242, 289, 301
MalI	GATC	2 cut(s)	157, 547
MboI	GATC	2 cut(s)	155, 545
MboII	GAAGA	2 cut(s)	536, 667
MfeI	CAATTG	1 cut(s)	712
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	3 cut(s)	206, 317, 336
MluCI	AATT	4 cut(s)	37, 57, 712, 748
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	9 cut(s)	20, 220, 356, 401, 585, 620, 632, 695, 748
Mph1103I	ATGCAT	1 cut(s)	555
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	4 cut(s)	206, 318, 381, 694
MspR9I	CCNGG	7 cut(s)	103, 206, 280, 318, 453, 694, 695
MunI	CAATTG	1 cut(s)	712
MvaI	CCWGG	3 cut(s)	103, 280, 453
MwoI	GCNNNNNNNGC	5 cut(s)	135, 201, 231, 321, 394
NciI	CCSGG	4 cut(s)	206, 318, 694, 695
NdeII	GATC	2 cut(s)	155, 545
NlaIII	CATG	7 cut(s)	147, 243, 373, 392, 444, 476, 599
NlaIV	GGNNCC	3 cut(s)	157, 334, 335
NmuCI	GTSAC	4 cut(s)	122, 131, 289, 301
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	3 cut(s)	147, 243, 599
PaqCI	CACCTGC	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 306
PkrI	GCNGC	5 cut(s)	6, 113, 236, 358, 368
PpuMI	RGGWCCY	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	629
Psp6I	CCWGG	3 cut(s)	101, 278, 451
PspGI	CCWGG	3 cut(s)	101, 278, 451
PspN4I	GGNNCC	3 cut(s)	157, 334, 335
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	4 cut(s)	332, 333, 629, 641
PspPPI	RGGWCCY	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	2 cut(s)	107, 152
RsaNI	GTAC	2 cut(s)	106, 151
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	5 cut(s)	5, 112, 235, 357, 367
Sau3AI	GATC	2 cut(s)	155, 545
Sau96I	GGNCC	4 cut(s)	332, 333, 629, 641
ScrFI	CCNGG	7 cut(s)	103, 206, 280, 318, 453, 694, 695
SduI	GDGCHC	3 cut(s)	206, 317, 336
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	36, 627
SinI	GGWCC	1 cut(s)	629
SmaI	CCCGGG	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	4 cut(s)	37, 57, 712, 748
SsiI	CCGC	5 cut(s)	90, 138, 234, 367, 690
SspMI	CTAG	2 cut(s)	573, 678
StyD4I	CCNGG	7 cut(s)	101, 204, 278, 316, 451, 692, 693
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	342, 621
TasI	AATT	4 cut(s)	37, 57, 712, 748
TauI	GCSGC	2 cut(s)	237, 369
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	4 cut(s)	136, 204, 355, 657
TseFI	GTSAC	4 cut(s)	122, 131, 289, 301
TseI	GCWGC	3 cut(s)	4, 111, 356
Tsp45I	GTSAC	4 cut(s)	122, 131, 289, 301
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	3 cut(s)	168, 409, 448
TspMI	CCCGGG	1 cut(s)	693
TspRI	CASTG	4 cut(s)	136, 204, 355, 657
VpaK11BI	GGWCC	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	636
XapI	RAATTY	1 cut(s)	748
XceI	RCATGY	3 cut(s)	147, 243, 599
XmaI	CCCGGG	1 cut(s)	693
XspI	CTAG	2 cut(s)	573, 678
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.