Rh2CG349100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017187
Physical Location & Seq
Reverse (-)
47117154 .. 47124213
7060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG349100.1

Sequence Viewer

Length: 744 bp
ATGCAGCTGAAGCTCGTTAACCAACCAAGTCATTCCCATGTTTCGGCCGACGATACTCCACTGTTGGCAGTTAATGCCAACGTTGCCGAGTCCGAAACCGAACCGCCTCCGGTTCTCGACGGAATCGCCGCCGTAGTGGGGGAACACGTTCTGTTCGGAGGCAAAAAGGCTGCTAACAACGAAGTCAACACCGAGAACACCCAAGTTTCCGATTTCGTCAACCTCTCGCTGCGTTTTGGCGGTTCCGAAACTTCGAAAACAGCCGCCGATAAGAAGGACATGGGAAACGTTTCGGTGCAGAAGAACTACAGGGGAGTGAGGAAGAGACCGTGGGGAAGGTTTTCGGCGGAGATAAGGGACCGTATCGGGAGATGCAGACACTGGCTGGGGACTTTCGACACGGCCGAGGAGGCGGCACGTGCGTACGACTCGGCGGCCAGGAGGCTGAGAGGGGCAAAAGCTCAGACCAACTTTCAAATCCCATCGGTGTTTCCAGTCTCGTATGACTCGGCTTCTTCATCAGCTTCTGTTAATAATAATGCGGCGGAGAAAAAGAGAAAAGTGAGTAGAAGTCGCGGAGCTAAGCCCAAATCTGTGAGGGAGACCAATTCAGTGGTGGTAACTTCAGTGGCTCAACTGTTTAGTCAGACTCCAATTCCCAGAACTTCTGTTATTGGGAATCGGAATCCGAATCTGGAGCTTGATTTGAAGCTGGGCATGAACTTTGGTTGCAGAGGAAGCTAG

Protein Analysis

247

Amino Acids

26.78

Weight (kDa)

9.91

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 102 - 151 2.7e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80580
fragaria_vesca FvH4_6g29010
malus_domestica MD17G1219300.v1.1
prunus_persica Prupe.3G094700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133601
rosa_laevigata RLG00000019354
rosa_multiflora Rmu_co8456135.1_g000001
rosa_rugosa Rorug02G0312700
rosa_samantha Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana Rw2G029780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 576
AclI AACGTT 2 cut(s) 81, 288
AcoI YGGCCR 3 cut(s) 45, 402, 435
AcuI CTGAAG 2 cut(s) 29, 609
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 43, 138
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 2 cut(s) 476, 709
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 8 cut(s) 7, 13, 461, 524, 581, 700, 712, 741
AluI AGCT 8 cut(s) 7, 13, 461, 524, 581, 700, 712, 741
Alw26I GTCTC 3 cut(s) 319, 502, 596
AlwNI CAGNNNCTG 2 cut(s) 381, 527
AoxI GGCC 3 cut(s) 45, 402, 435
ApeKI GCWGC 3 cut(s) 4, 170, 229
Asp700I GAANNNNTTC 3 cut(s) 147, 289, 340
AspS9I GGNCC 1 cut(s) 358
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 419
BbvI GCAGC 3 cut(s) 16, 157, 216
BccI CCATC 1 cut(s) 490
BceAI ACGGC 2 cut(s) 116, 417
BciT130I CCWGG 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 319, 502, 596
BfaI CTAG 1 cut(s) 742
BfmI CTRYAG 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 8 cut(s) 5, 129, 171, 230, 264, 414, 435, 543
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 8 cut(s) 6, 130, 172, 231, 265, 415, 436, 544
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 244, 359
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 716
Bpu1102I GCTNAGC 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 419
BsaI GGTCTC 2 cut(s) 319, 596
BsaJI CCNNGG 2 cut(s) 329, 405
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 138
Bse1I ACTGG 2 cut(s) 386, 494
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 2 cut(s) 329, 405
BseLI CCNNNNNNNGG 2 cut(s) 43, 138
BseMII CTCAG 2 cut(s) 437, 476
BseNI ACTGG 2 cut(s) 386, 494
BseRI GAGGAG 1 cut(s) 422
BseX3I CGGCCG 2 cut(s) 45, 402
BseXI GCAGC 3 cut(s) 16, 157, 216
BseYI CCCAGC 2 cut(s) 385, 712
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 576
Bsh1285I CGRYCG 2 cut(s) 48, 405
BshFI GGCC 3 cut(s) 47, 404, 437
BsiEI CGRYCG 2 cut(s) 48, 405
BsiSI CCGG 1 cut(s) 110
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 2 cut(s) 371, 403
BslI CCNNNNNNNGG 2 cut(s) 43, 138
BsmAI GTCTC 3 cut(s) 319, 502, 596
BsmFI GGGAC 2 cut(s) 371, 403
BsnI GGCC 3 cut(s) 47, 404, 437
Bso31I GGTCTC 2 cut(s) 319, 596
Bsp119I TTCGAA 1 cut(s) 254
Bsp1720I GCTNAGC 1 cut(s) 582
BspANI GGCC 3 cut(s) 47, 404, 437
BspCNI CTCAG 2 cut(s) 438, 475
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 2 cut(s) 244, 359
BspT104I TTCGAA 1 cut(s) 254
BspTNI GGTCTC 2 cut(s) 319, 596
BsrI ACTGG 2 cut(s) 386, 494
BssECI CCNNGG 2 cut(s) 329, 405
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 4 cut(s) 63, 330, 362, 639
Bst6I CTCTTC 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 446, 462, 582
BstDSI CCRYGG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 576
BstMAI GTCTC 3 cut(s) 319, 502, 596
BstMCI CGRYCG 2 cut(s) 48, 405
BstMWI GCNNNNNNNGC 6 cut(s) 10, 74, 83, 410, 419, 738
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 16, 157, 216
BstXI CCANNNNNNTGG 1 cut(s) 613
BstZI CGGCCG 2 cut(s) 45, 402
BsuRI GGCC 3 cut(s) 47, 404, 437
BtgI CCRYGG 1 cut(s) 329
BtsIMutI CAGTG 4 cut(s) 59, 379, 618, 633
CaiI CAGNNNCTG 2 cut(s) 381, 527
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 424
CviAII CATG 3 cut(s) 38, 280, 718
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 3 cut(s) 446, 462, 582
EaeI YGGCCR 3 cut(s) 45, 402, 435
EagI CGGCCG 2 cut(s) 45, 402
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 2 cut(s) 362, 560
EclXI CGGCCG 2 cut(s) 45, 402
Eco31I GGTCTC 2 cut(s) 319, 596
Eco47I GGWCC 1 cut(s) 358
Eco52I CGGCCG 2 cut(s) 45, 402
Eco57I CTGAAG 2 cut(s) 29, 609
Eco72I CACGTG 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 41, 283, 721
FaiI YATR 4 cut(s) 39, 281, 504, 719
FaqI GGGAC 2 cut(s) 371, 403
FatI CATG 3 cut(s) 37, 279, 717
Fnu4HI GCNGC 8 cut(s) 5, 129, 171, 230, 264, 414, 435, 543
Fsp4HI GCNGC 8 cut(s) 5, 129, 171, 230, 264, 414, 435, 543
FspBI CTAG 1 cut(s) 742
GluI GCNGC 8 cut(s) 5, 129, 171, 230, 264, 414, 435, 543
GsaI CCCAGC 2 cut(s) 389, 716
GsuI CTGGAG 1 cut(s) 716
HaeIII GGCC 3 cut(s) 47, 404, 437
HapII CCGG 1 cut(s) 110
Hin1II CATG 3 cut(s) 41, 283, 721
HincII GTYRAC 3 cut(s) 19, 187, 220
HindII GTYRAC 3 cut(s) 19, 187, 220
HinfI GANTC 8 cut(s) 89, 123, 428, 506, 649, 679, 685, 691
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 3 cut(s) 19, 187, 220
Hpy188I TCNGA 8 cut(s) 94, 158, 211, 247, 465, 648, 684, 690
Hpy188III TCNNGA 3 cut(s) 116, 367, 695
Hpy8I GTNNAC 3 cut(s) 19, 187, 220
Hpy99I CGWCG 2 cut(s) 53, 122
HpyAV CCTTC 2 cut(s) 268, 330
HpyCH4III ACNGT 4 cut(s) 63, 330, 362, 639
HpyCH4IV ACGT 4 cut(s) 81, 147, 288, 418
HpyCH4V TGCA 4 cut(s) 4, 298, 375, 732
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 74, 83, 410, 419, 738
HpyF3I CTNAG 3 cut(s) 446, 462, 582
HpySE526I ACGT 4 cut(s) 81, 147, 288, 418
Hsp92II CATG 3 cut(s) 41, 283, 721
KspAI GTTAAC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 578, 697
Lsp1109I GCAGC 3 cut(s) 16, 157, 216
LweI GCATC 1 cut(s) 362
MaeI CTAG 1 cut(s) 742
MaeII ACGT 4 cut(s) 81, 147, 288, 418
MaeIII GTNAC 1 cut(s) 619
MboII GAAGA 3 cut(s) 313, 334, 507
MluCI AATT 2 cut(s) 607, 654
MlyI GAGTC 4 cut(s) 98, 422, 500, 643
MroXI GAANNNNTTC 3 cut(s) 147, 289, 340
MseI TTAA 3 cut(s) 18, 72, 531
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 439
MvaI CCWGG 1 cut(s) 439
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 6 cut(s) 10, 74, 83, 410, 419, 738
NlaIII CATG 3 cut(s) 41, 283, 721
NlaIV GGNNCC 2 cut(s) 244, 359
NmeAIII GCCGAG 4 cut(s) 112, 410, 430, 488
NspV TTCGAA 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdmI GAANNNNTTC 3 cut(s) 147, 289, 340
PfeI GAWTC 4 cut(s) 123, 679, 685, 691
Pfl23II CGTACG 1 cut(s) 423
PkrI GCNGC 8 cut(s) 6, 130, 172, 231, 265, 415, 436, 544
PleI GAGTC 4 cut(s) 97, 422, 500, 643
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 4 cut(s) 97, 422, 500, 643
Ppu21I YACGTR 1 cut(s) 419
Psp1406I AACGTT 2 cut(s) 81, 288
Psp6I CCWGG 1 cut(s) 437
PspCI CACGTG 1 cut(s) 419
PspFI CCCAGC 2 cut(s) 385, 712
PspGI CCWGG 1 cut(s) 437
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 244, 359
PspPI GGNCC 1 cut(s) 358
PstNI CAGNNNCTG 2 cut(s) 381, 527
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 3 cut(s) 18, 72, 531
SatI GCNGC 8 cut(s) 5, 129, 171, 230, 264, 414, 435, 543
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 4 cut(s) 98, 422, 500, 643
ScrFI CCNGG 1 cut(s) 439
SfaNI GCATC 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 254
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 2 cut(s) 607, 654
SspMI CTAG 1 cut(s) 742
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 4 cut(s) 63, 330, 362, 639
TaiI ACGT 4 cut(s) 84, 150, 291, 421
TaqI TCGA 3 cut(s) 117, 254, 396
TasI AATT 2 cut(s) 607, 654
TauI GCSGC 5 cut(s) 131, 266, 416, 437, 545
TfiI GAWTC 4 cut(s) 123, 679, 685, 691
Tru1I TTAA 3 cut(s) 18, 72, 531
Tru9I TTAA 3 cut(s) 18, 72, 531
TscAI CASTG 4 cut(s) 66, 386, 618, 633
TseI GCWGC 3 cut(s) 4, 170, 229
TspDTI ATGAA 2 cut(s) 507, 734
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 4 cut(s) 66, 386, 618, 633
VpaK11BI GGWCC 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmnI GAANNNNTTC 3 cut(s) 147, 289, 340
XspI CTAG 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.