Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0017187

Physical Location & Seq

Genomic Coordinates Forward (+)

7105806 .. 7106675

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G094700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCTCCGTTCCGTTCTGTCGTAACCCGTTAACGTTTCATGCACCCGAAAAGTTTCGGTTTCTGTCCGAGGCGAATTCTCTTTACGAGTCTTTTTTCAACAAAACCCACTTCTCGGTTTCTTCTGTTTCGTCCCCAAACCAGCTTAACATCTTCAACCCACCATGTCATACCAACGTTTCGGCTGAAATCCCGATTTGTGGTGTAAGTGGTAAAGAATCGGAGTCCCAAACCGGAACTCCTCCGGTTCTTGACGGAATCGCGGCCGTTGTCGGCCAACATGTCCTCTATGGAAGCCAAAAGACTTGTAACGTCCCAACCAACGGCGAAACGACACAAATTCCTGAATTCGGTTACTGTTCGGAGCGTATCGGTTCAGCCGAAACTTCCAAAAAAGATGCCGACAACAAGAAGGGTATCGGAAACCTTTCGGTGCAAAAGAACTACAGGGGAGTGAGGAAGCGTCCATGGGGAAGGTGGTCCGCGGAGATAAGAGACCGAATCGGGAGGTGCCGGCACTGGCTGGGAACGTTCGACACGGCGGAGGAGGCGGCGCGTGCTTACGACTCGGCGGCGAGGAGGCTGAGAGGTGCAAAGGCTCGGACCAACTTTGAAATCCCATCAGTGTTTCCGCTCTCCTCACCTTGCTCATCATCTTCTTCTTCAGACGCAAAGAGAGTGATTAGGGGTAAAAATAATATTAAGGGTTTGAAAAGCAAGAGAAAATGTTCAGTGGTGACTTGTGTGGCTCATTTGTTTAGTGAGGCTCCAACCCATCTTAGAAGCCAAGTTATGGAGATCAAAGAAAATGTGGAGCTTGATTTGAAGCTGGGAGTTAGAAAGAGTGATATTGGTAAAACAACCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

290

Amino Acids

31.78

Weight (kDa)

9.56

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80580
fragaria_vesca	FvH4_6g29010
malus_domestica	MD17G1219300.v1.1
prunus_persica	Prupe.3G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133601
rosa_laevigata	RLG00000019354
rosa_multiflora	Rmu_co8456135.1_g000001
rosa_rugosa	Rorug02G0312700
rosa_samantha	Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana	Rw2G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	510
AccB7I	CCANNNNNTGG	1 cut(s)	793
AccBSI	CCGCTC	1 cut(s)	634
AccII	CGCG	3 cut(s)	263, 485, 556
AciI	CCGC	7 cut(s)	263, 483, 485, 542, 551, 572, 632
AclI	AACGTT	3 cut(s)	35, 177, 530
AcoI	YGGCCR	2 cut(s)	264, 274
AcsI	RAATTY	3 cut(s)	76, 339, 347
AcuI	CTGAAG	1 cut(s)	648
AfiI	CCNNNNNNNGG	5 cut(s)	115, 200, 323, 350, 793
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	5 cut(s)	100, 157, 614, 712, 826
AluBI	AGCT	3 cut(s)	145, 817, 829
AluI	AGCT	3 cut(s)	145, 817, 829
Alw26I	GTCTC	1 cut(s)	489
AoxI	GGCC	3 cut(s)	3, 264, 274
ApoI	RAATTY	3 cut(s)	76, 339, 347
Asp700I	GAANNNNTTC	3 cut(s)	54, 427, 727
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	480, 603
AsuHPI	GGTGA	2 cut(s)	633, 748
AvaII	GGWCC	2 cut(s)	480, 603
BanI	GGYRCC	1 cut(s)	510
BccI	CCATC	2 cut(s)	628, 783
BceAI	ACGGC	3 cut(s)	251, 340, 555
BcoDI	GTCTC	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	445
BisI	GCNGC	3 cut(s)	264, 552, 573
BlsI	GCNGC	3 cut(s)	265, 553, 574
Bme18I	GGWCC	2 cut(s)	480, 603
BmgT120I	GGNCC	2 cut(s)	480, 603
BmiI	GGNNCC	2 cut(s)	512, 768
BmsI	GCATC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	69, 467, 483
BsaWI	WCCGGW	2 cut(s)	233, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 200, 323, 350, 793
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	524
BseDI	CCNNGG	3 cut(s)	69, 467, 483
BseLI	CCNNNNNNNGG	5 cut(s)	115, 200, 323, 350, 793
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	4 cut(s)	231, 560, 592, 628
BseX3I	CGGCCG	1 cut(s)	264
BseYI	CCCAGC	2 cut(s)	523, 829
Bsh1236I	CGCG	3 cut(s)	263, 485, 556
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	5, 266, 276
BshNI	GGYRCC	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	234, 245, 514
BslFI	GGGAC	3 cut(s)	118, 211, 299
BslI	CCNNNNNNNGG	5 cut(s)	115, 200, 323, 350, 793
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	3 cut(s)	118, 211, 299
BsnI	GGCC	3 cut(s)	5, 266, 276
Bso31I	GGTCTC	1 cut(s)	489
Bsp143I	GATC	1 cut(s)	798
Bsp19I	CCATGG	1 cut(s)	467
BspACI	CCGC	7 cut(s)	263, 483, 485, 542, 551, 572, 632
BspANI	GGCC	3 cut(s)	5, 266, 276
BspCNI	CTCAG	1 cut(s)	576
BspFNI	CGCG	3 cut(s)	263, 485, 556
BspLI	GGNNCC	2 cut(s)	512, 768
BspT107I	GGYRCC	1 cut(s)	510
BspTNI	GGTCTC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	3 cut(s)	69, 467, 483
BssMI	GATC	1 cut(s)	798
BssT1I	CCWWGG	1 cut(s)	467
Bst4CI	ACNGT	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	515, 558
BstDEI	CTNAG	2 cut(s)	584, 779
BstDSI	CCRYGG	2 cut(s)	467, 483
BstFNI	CGCG	3 cut(s)	263, 485, 556
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	1 cut(s)	801
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	798
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 557
BstNSI	RCATGY	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	445
BstUI	CGCG	3 cut(s)	263, 485, 556
BstZI	CGGCCG	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	5, 266, 276
BtgI	CCRYGG	2 cut(s)	467, 483
BtsIMutI	CAGTG	3 cut(s)	517, 630, 738
Cac8I	GCNNGC	2 cut(s)	515, 558
CfoI	GCGC	1 cut(s)	556
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	480, 603
Cfr42I	CCGCGG	1 cut(s)	486
CseI	GACGC	2 cut(s)	452, 677
CviAII	CATG	4 cut(s)	41, 165, 281, 468
DdeI	CTNAG	2 cut(s)	584, 779
DpnI	GATC	1 cut(s)	800
DpnII	GATC	1 cut(s)	798
EaeI	YGGCCR	2 cut(s)	264, 274
EagI	CGGCCG	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	557
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	480, 603
Eco52I	CGGCCG	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	648
EcoRI	GAATTC	2 cut(s)	76, 347
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	4 cut(s)	44, 168, 284, 471
FaiI	YATR	8 cut(s)	42, 166, 171, 282, 291, 469, 794, 868
FaqI	GGGAC	3 cut(s)	118, 211, 299
FatI	CATG	4 cut(s)	40, 164, 280, 467
Fnu4HI	GCNGC	3 cut(s)	264, 552, 573
Fsp4HI	GCNGC	3 cut(s)	264, 552, 573
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	3 cut(s)	264, 552, 573
GsaI	CCCAGC	2 cut(s)	527, 833
HaeIII	GGCC	3 cut(s)	5, 266, 276
HapII	CCGG	3 cut(s)	234, 245, 514
HgaI	GACGC	2 cut(s)	452, 677
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	4 cut(s)	44, 168, 284, 471
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	6 cut(s)	89, 218, 224, 258, 501, 566
HpaI	GTTAAC	1 cut(s)	33
HpaII	CCGG	3 cut(s)	234, 245, 514
HphI	GGTGA	2 cut(s)	633, 748
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	6 cut(s)	70, 223, 364, 422, 603, 667
Hpy188III	TCNNGA	4 cut(s)	193, 251, 344, 505
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	406, 468
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	4 cut(s)	35, 177, 312, 530
HpyCH4V	TGCA	3 cut(s)	44, 436, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 557
HpyF3I	CTNAG	2 cut(s)	584, 779
HpySE526I	ACGT	4 cut(s)	35, 177, 312, 530
Hsp92II	CATG	4 cut(s)	44, 168, 284, 471
HspAI	GCGC	1 cut(s)	554
KroI	GCCGGC	1 cut(s)	513
KroNI	GCCGGC	1 cut(s)	515
KspAI	GTTAAC	1 cut(s)	33
KspI	CCGCGG	1 cut(s)	486
Kzo9I	GATC	1 cut(s)	798
LmnI	GCTCC	3 cut(s)	364, 772, 814
LpnPI	CCDG	9 cut(s)	155, 247, 258, 357, 433, 505, 509, 527, 815
LweI	GCATC	1 cut(s)	388
MaeII	ACGT	4 cut(s)	35, 177, 312, 530
MaeIII	GTNAC	4 cut(s)	23, 308, 353, 736
MalI	GATC	1 cut(s)	800
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	1 cut(s)	798
MboII	GAAGA	5 cut(s)	114, 145, 648, 651, 654
MluCI	AATT	3 cut(s)	76, 339, 347
MlyI	GAGTC	3 cut(s)	98, 233, 560
MmeI	TCCRAC	1 cut(s)	794
MroNI	GCCGGC	1 cut(s)	513
MroXI	GAANNNNTTC	3 cut(s)	54, 427, 727
MseI	TTAA	3 cut(s)	32, 147, 702
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	3 cut(s)	234, 245, 514
MvnI	CGCG	3 cut(s)	263, 485, 556
MwoI	GCNNNNNNNGC	2 cut(s)	548, 557
NaeI	GCCGGC	1 cut(s)	515
NcoI	CCATGG	1 cut(s)	467
NdeII	GATC	1 cut(s)	798
NgoMIV	GCCGGC	1 cut(s)	513
NlaIII	CATG	4 cut(s)	44, 168, 284, 471
NlaIV	GGNNCC	2 cut(s)	512, 768
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	1 cut(s)	284
PciI	ACATGT	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	515
PdmI	GAANNNNTTC	3 cut(s)	54, 427, 727
PfeI	GAWTC	3 cut(s)	218, 258, 501
PflMI	CCANNNNNTGG	1 cut(s)	793
PkrI	GCNGC	3 cut(s)	265, 553, 574
PleI	GAGTC	3 cut(s)	97, 232, 560
PpsI	GAGTC	3 cut(s)	97, 232, 560
PscI	ACATGT	1 cut(s)	280
Psp1406I	AACGTT	3 cut(s)	35, 177, 530
PspFI	CCCAGC	2 cut(s)	523, 829
PspN4I	GGNNCC	2 cut(s)	512, 768
PspPI	GGNCC	2 cut(s)	480, 603
SacII	CCGCGG	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	32, 147, 702
SatI	GCNGC	3 cut(s)	264, 552, 573
Sau3AI	GATC	1 cut(s)	798
Sau96I	GGNCC	2 cut(s)	480, 603
SchI	GAGTC	3 cut(s)	98, 233, 560
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	445
Sfr303I	CCGCGG	1 cut(s)	486
SgrBI	CCGCGG	1 cut(s)	486
SinI	GGWCC	2 cut(s)	480, 603
Sse9I	AATT	3 cut(s)	76, 339, 347
SsiI	CCGC	7 cut(s)	263, 483, 485, 542, 551, 572, 632
SspI	AATATT	1 cut(s)	700
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	4 cut(s)	38, 180, 315, 533
TaqI	TCGA	1 cut(s)	534
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	76, 339, 347
TauI	GCSGC	3 cut(s)	266, 554, 575
TfiI	GAWTC	3 cut(s)	218, 258, 501
Tru1I	TTAA	3 cut(s)	32, 147, 702
Tru9I	TTAA	3 cut(s)	32, 147, 702
TscAI	CASTG	3 cut(s)	524, 630, 738
TseFI	GTSAC	1 cut(s)	736
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	3 cut(s)	524, 630, 738
Van91I	CCANNNNNTGG	1 cut(s)	793
VpaK11BI	GGWCC	2 cut(s)	480, 603
XapI	RAATTY	3 cut(s)	76, 339, 347
XceI	RCATGY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XmnI	GAANNNNTTC	3 cut(s)	54, 427, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.