RLG00000019354

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017187
Physical Location & Seq
Reverse (-)
50722920 .. 50725366
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019354

Sequence Viewer

Length: 1161 bp
ATGGACATCGCTAACCGTTCAGTTTCCTTCAGCCCTTGCGTTTCTCTGTCTGCATTCTGCTCTAATCTTATTGCATCCCACCTCCTCCGACCTCTCAATTTTCCTGTTTCTCAACGAAGTTTTGATTCGTCTGAGAGAGTGAACGTCTTGTTTGACGGCTCTCTTTCTACCCTCATTGTTCCCAGATCGGCGAAGTTGACTGGTAGTGGTGGAATTTCAAGGCATCCAAGTTTGGAAGTTGCCTCATGTTGCCGGTGGGCTTGGAGCATGAGTTTTAAAGCTACAGAGACCGTTCCGTTCCTCCGGCAGCCCATTTCGTTCCGTTCACCCAACACGTTTCGGTTACTAACTGAAGCTGCTTCATTCTACGAGTCTTACTTAAGTGGCCAGTTCTCCGTTCCTCCGCCTTCGGTGCCTAACCAGCAGAAGCTCTTTAACCAACCAAGTCATTCCCATGTTTCGGCCGACGATACTCCACTGTTGGCAGTTAATGCCAACGTTGCCGAGTCCGAAACCGAACCGCCTCCGGTTCTCGACGGAATAGCCGCCGTAGTGGGGGAACAAATTCTATTCGGAGGCAAAAAGGCTGCTAACAACGTGGTCAACACCGAGAACACCCAAGTTTCCGATTTCGTCAACCTCTCGCTGCGTTTTAGCGGTTCCGAAACTTCGAAAACAGCCGCCGATAAGAAGGACATGGGAAACGTTTCGGTGCAGAAGAACTACAGGGGAGTGAGGAAGAGACCGTGGGGAAGGTTTTCGGCGGAGATAAGGGATCGTATCGGGAGATGCAGACACTGGCTGGGGACTTTCGACACGGCCGAGGAGGCGGCACGTGCGTACGACTCGGCGGCGAGGAGGCTGAGAGGGGCAAAAGCTCAGACCAACTTTCAAATCCCATCGGTGTTTCCAGTCTCGTATGACTCGGCTTCTTCATCAGCTTCTGTTAATAATAACGCGGCGGAGAAAAAGAGAAAAGTGAGTAGAAGTCGCGGAACGAAACCCAAATCTGTGAGGGAGACCAATTCAGTGGTGGTAACTTCAGTGTCTCAACTGTTTAGTCAGACTCCAGTTCCCAGAACTTCTGTTATTGGGAATCGGAATCCGAATCTGGAGCTTGATTTGAAGCTGGGCATGAACTTTGGTTGCAGAGGAAGCTAG

Protein Analysis

387

Amino Acids

42.09

Weight (kDa)

9.88

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 241 - 290 5.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80580
fragaria_vesca FvH4_6g29010
malus_domestica MD17G1219300.v1.1
prunus_persica Prupe.3G094700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133601
rosa_laevigata RLG00000019354
rosa_multiflora Rmu_co8456135.1_g000001
rosa_rugosa Rorug02G0312700
rosa_samantha Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana Rw2G029780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccII CGCG 2 cut(s) 959, 993
AclI AACGTT 2 cut(s) 498, 705
AclWI GGATC 1 cut(s) 783
AcoI YGGCCR 3 cut(s) 385, 462, 819
AcsI RAATTY 2 cut(s) 213, 564
AcuI CTGAAG 3 cut(s) 13, 372, 1026
AcvI CACGTG 1 cut(s) 836
AfaI GTAC 1 cut(s) 842
AfiI CCNNNNNNNGG 2 cut(s) 460, 555
AflII CTTAAG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 3 cut(s) 219, 893, 1126
AluBI AGCT 8 cut(s) 281, 356, 430, 878, 941, 1117, 1129, 1158
AluI AGCT 8 cut(s) 281, 356, 430, 878, 941, 1117, 1129, 1158
Alw26I GTCTC 5 cut(s) 281, 736, 919, 1013, 1053
AlwI GGATC 1 cut(s) 783
AlwNI CAGNNNCTG 2 cut(s) 798, 944
AoxI GGCC 3 cut(s) 385, 462, 819
ApeKI GCWGC 4 cut(s) 307, 356, 587, 646
ApoI RAATTY 2 cut(s) 213, 564
Asp700I GAANNNNTTC 3 cut(s) 564, 706, 757
AsuHPI GGTGA 1 cut(s) 318
AsuII TTCGAA 1 cut(s) 671
BalI TGGCCA 1 cut(s) 387
BanI GGYRCC 1 cut(s) 412
BbrPI CACGTG 1 cut(s) 836
BbvI GCAGC 4 cut(s) 319, 343, 574, 633
BccI CCATC 1 cut(s) 907
BceAI ACGGC 3 cut(s) 172, 533, 834
BcoDI GTCTC 5 cut(s) 281, 736, 919, 1013, 1053
BfaI CTAG 1 cut(s) 1159
BfmI CTRYAG 2 cut(s) 282, 724
BfrI CTTAAG 1 cut(s) 379
BglI GCCNNNNNGGC 1 cut(s) 827
BisI GCNGC 9 cut(s) 308, 357, 546, 588, 647, 681, 831, 852, 960
BlsI GCNGC 9 cut(s) 309, 358, 547, 589, 648, 682, 832, 853, 961
BmiI GGNNCC 2 cut(s) 414, 661
BmsI GCATC 3 cut(s) 83, 232, 779
BpmI CTGGAG 2 cut(s) 1053, 1133
Bpu14I TTCGAA 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 836
BsaI GGTCTC 3 cut(s) 281, 736, 1013
BsaJI CCNNGG 2 cut(s) 746, 822
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 555
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 5 cut(s) 205, 388, 803, 911, 1070
BseDI CCNNGG 2 cut(s) 746, 822
BseGI GGATG 2 cut(s) 74, 223
BseLI CCNNNNNNNGG 2 cut(s) 460, 555
BseMII CTCAG 3 cut(s) 123, 854, 893
BseNI ACTGG 5 cut(s) 205, 388, 803, 911, 1070
BseRI GAGGAG 3 cut(s) 74, 839, 871
BseX3I CGGCCG 2 cut(s) 462, 819
BseXI GCAGC 4 cut(s) 319, 343, 574, 633
BseYI CCCAGC 2 cut(s) 802, 1129
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 2 cut(s) 959, 993
Bsh1285I CGRYCG 2 cut(s) 465, 822
BshFI GGCC 3 cut(s) 387, 464, 821
BshNI GGYRCC 1 cut(s) 412
BsiEI CGRYCG 2 cut(s) 465, 822
BsiSI CCGG 3 cut(s) 253, 304, 527
BsiWI CGTACG 1 cut(s) 840
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 2 cut(s) 460, 555
BsmAI GTCTC 5 cut(s) 281, 736, 919, 1013, 1053
BsmFI GGGAC 1 cut(s) 820
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 3 cut(s) 387, 464, 821
Bso31I GGTCTC 3 cut(s) 281, 736, 1013
Bsp119I TTCGAA 1 cut(s) 671
Bsp143I GATC 2 cut(s) 185, 775
BspANI GGCC 3 cut(s) 387, 464, 821
BspCNI CTCAG 3 cut(s) 124, 855, 892
BspFNI CGCG 2 cut(s) 959, 993
BspLI GGNNCC 2 cut(s) 414, 661
BspPI GGATC 1 cut(s) 783
BspT104I TTCGAA 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 412
BspTI CTTAAG 1 cut(s) 379
BspTNI GGTCTC 3 cut(s) 281, 736, 1013
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 5 cut(s) 205, 388, 803, 911, 1070
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 746, 822
BssMI GATC 2 cut(s) 185, 775
Bst4CI ACNGT 5 cut(s) 17, 292, 480, 747, 1056
Bst6I CTCTTC 1 cut(s) 734
BstAFI CTTAAG 1 cut(s) 379
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 836
BstBI TTCGAA 1 cut(s) 671
BstDEI CTNAG 3 cut(s) 132, 863, 879
BstDSI CCRYGG 1 cut(s) 746
BstF5I GGATG 2 cut(s) 74, 223
BstFNI CGCG 2 cut(s) 959, 993
BstKTI GATC 2 cut(s) 188, 778
BstMAI GTCTC 5 cut(s) 281, 736, 919, 1013, 1053
BstMBI GATC 2 cut(s) 185, 775
BstMCI CGRYCG 2 cut(s) 465, 822
BstMWI GCNNNNNNNGC 7 cut(s) 412, 421, 491, 500, 827, 836, 1155
BstSFI CTRYAG 2 cut(s) 282, 724
BstUI CGCG 2 cut(s) 959, 993
BstV1I GCAGC 4 cut(s) 319, 343, 574, 633
BstXI CCANNNNNNTGG 1 cut(s) 1030
BstZI CGGCCG 2 cut(s) 462, 819
BsuRI GGCC 3 cut(s) 387, 464, 821
BtgI CCRYGG 1 cut(s) 746
BtsCI GGATG 2 cut(s) 74, 223
BtsIMutI CAGTG 4 cut(s) 476, 796, 1035, 1050
CaiI CAGNNNCTG 2 cut(s) 798, 944
Cfr10I RCCGGY 1 cut(s) 252
Csp6I GTAC 1 cut(s) 841
CviAII CATG 5 cut(s) 246, 268, 455, 697, 1135
CviQI GTAC 1 cut(s) 841
DdeI CTNAG 3 cut(s) 132, 863, 879
DpnI GATC 2 cut(s) 187, 777
DpnII GATC 2 cut(s) 185, 775
DraI TTTAAA 1 cut(s) 277
EaeI YGGCCR 3 cut(s) 385, 462, 819
EagI CGGCCG 2 cut(s) 462, 819
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
EciI GGCGGA 3 cut(s) 393, 779, 977
EclXI CGGCCG 2 cut(s) 462, 819
Eco31I GGTCTC 3 cut(s) 281, 736, 1013
Eco52I CGGCCG 2 cut(s) 462, 819
Eco57I CTGAAG 3 cut(s) 13, 372, 1026
Eco72I CACGTG 1 cut(s) 836
FaeI CATG 5 cut(s) 249, 271, 458, 700, 1138
FaiI YATR 6 cut(s) 247, 269, 456, 698, 921, 1136
FaqI GGGAC 1 cut(s) 820
FatI CATG 5 cut(s) 245, 267, 454, 696, 1134
Fnu4HI GCNGC 9 cut(s) 308, 357, 546, 588, 647, 681, 831, 852, 960
FokI GGATG 2 cut(s) 61, 210
Fsp4HI GCNGC 9 cut(s) 308, 357, 546, 588, 647, 681, 831, 852, 960
FspBI CTAG 1 cut(s) 1159
GluI GCNGC 9 cut(s) 308, 357, 546, 588, 647, 681, 831, 852, 960
GsaI CCCAGC 2 cut(s) 806, 1133
GsuI CTGGAG 2 cut(s) 1053, 1133
HaeIII GGCC 3 cut(s) 387, 464, 821
HapII CCGG 3 cut(s) 253, 304, 527
Hin1II CATG 5 cut(s) 249, 271, 458, 700, 1138
HincII GTYRAC 3 cut(s) 198, 604, 637
HindII GTYRAC 3 cut(s) 198, 604, 637
HinfI GANTC 9 cut(s) 125, 371, 506, 845, 923, 1066, 1096, 1102, 1108
HpaII CCGG 3 cut(s) 253, 304, 527
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 5 cut(s) 142, 198, 326, 604, 637
Hpy188III TCNNGA 3 cut(s) 533, 784, 1112
Hpy8I GTNNAC 5 cut(s) 142, 198, 326, 604, 637
Hpy99I CGWCG 2 cut(s) 470, 539
HpyAV CCTTC 4 cut(s) 37, 417, 685, 747
HpyCH4III ACNGT 5 cut(s) 17, 292, 480, 747, 1056
HpyCH4IV ACGT 6 cut(s) 144, 335, 498, 597, 705, 835
HpyCH4V TGCA 5 cut(s) 53, 74, 715, 792, 1149
HpyF10VI GCNNNNNNNGC 7 cut(s) 412, 421, 491, 500, 827, 836, 1155
HpyF3I CTNAG 3 cut(s) 132, 863, 879
HpySE526I ACGT 6 cut(s) 144, 335, 498, 597, 705, 835
Hsp92II CATG 5 cut(s) 249, 271, 458, 700, 1138
Kzo9I GATC 2 cut(s) 185, 775
LmnI GCTCC 2 cut(s) 264, 1114
Lsp1109I GCAGC 4 cut(s) 319, 343, 574, 633
LweI GCATC 3 cut(s) 83, 232, 779
MaeI CTAG 1 cut(s) 1159
MaeII ACGT 6 cut(s) 144, 335, 498, 597, 705, 835
MaeIII GTNAC 2 cut(s) 342, 1036
MalI GATC 2 cut(s) 187, 777
MboI GATC 2 cut(s) 185, 775
MboII GAAGA 3 cut(s) 730, 751, 924
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 4 cut(s) 97, 213, 564, 1024
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 5 cut(s) 380, 515, 839, 917, 1060
MmeI TCCRAC 1 cut(s) 112
Mox20I TGGCCA 1 cut(s) 387
MroXI GAANNNNTTC 3 cut(s) 564, 706, 757
MscI TGGCCA 1 cut(s) 387
MseI TTAA 5 cut(s) 276, 380, 435, 489, 948
MslI CAYNNNNRTG 1 cut(s) 453
Msp20I TGGCCA 1 cut(s) 387
MspCI CTTAAG 1 cut(s) 379
MspI CCGG 3 cut(s) 253, 304, 527
Mva1269I GAATGC 1 cut(s) 53
MvnI CGCG 2 cut(s) 959, 993
MwoI GCNNNNNNNGC 7 cut(s) 412, 421, 491, 500, 827, 836, 1155
NdeII GATC 2 cut(s) 185, 775
NlaIII CATG 5 cut(s) 249, 271, 458, 700, 1138
NlaIV GGNNCC 2 cut(s) 414, 661
NmeAIII GCCGAG 4 cut(s) 529, 827, 847, 905
NspV TTCGAA 1 cut(s) 671
PcsI WCGNNNNNNNCGW 1 cut(s) 819
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 3 cut(s) 564, 706, 757
PfeI GAWTC 4 cut(s) 125, 1096, 1102, 1108
Pfl23II CGTACG 1 cut(s) 840
PkrI GCNGC 9 cut(s) 309, 358, 547, 589, 648, 682, 832, 853, 961
PleI GAGTC 5 cut(s) 379, 514, 839, 917, 1060
PmaCI CACGTG 1 cut(s) 836
PmlI CACGTG 1 cut(s) 836
PpsI GAGTC 5 cut(s) 379, 514, 839, 917, 1060
Ppu21I YACGTR 1 cut(s) 836
Psp1406I AACGTT 2 cut(s) 498, 705
PspCI CACGTG 1 cut(s) 836
PspFI CCCAGC 2 cut(s) 802, 1129
PspLI CGTACG 1 cut(s) 840
PspN4I GGNNCC 2 cut(s) 414, 661
PstNI CAGNNNCTG 2 cut(s) 798, 944
RsaI GTAC 1 cut(s) 842
RsaNI GTAC 1 cut(s) 841
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 5 cut(s) 276, 380, 435, 489, 948
SatI GCNGC 9 cut(s) 308, 357, 546, 588, 647, 681, 831, 852, 960
Sau3AI GATC 2 cut(s) 185, 775
SchI GAGTC 5 cut(s) 380, 515, 839, 917, 1060
SfaNI GCATC 3 cut(s) 83, 232, 779
SfcI CTRYAG 2 cut(s) 282, 724
SfuI TTCGAA 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 4 cut(s) 97, 213, 564, 1024
SspMI CTAG 1 cut(s) 1159
TaaI ACNGT 5 cut(s) 17, 292, 480, 747, 1056
TaiI ACGT 6 cut(s) 147, 338, 501, 600, 708, 838
TaqI TCGA 3 cut(s) 534, 671, 813
TasI AATT 4 cut(s) 97, 213, 564, 1024
TauI GCSGC 5 cut(s) 548, 683, 833, 854, 962
TfiI GAWTC 4 cut(s) 125, 1096, 1102, 1108
Tru1I TTAA 5 cut(s) 276, 380, 435, 489, 948
Tru9I TTAA 5 cut(s) 276, 380, 435, 489, 948
TscAI CASTG 4 cut(s) 483, 803, 1035, 1050
TseI GCWGC 4 cut(s) 307, 356, 587, 646
TspDTI ATGAA 3 cut(s) 351, 924, 1151
TspGWI ACGGA 4 cut(s) 285, 311, 385, 552
TspRI CASTG 4 cut(s) 483, 803, 1035, 1050
Vha464I CTTAAG 1 cut(s) 379
XapI RAATTY 2 cut(s) 213, 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 1030
XmnI GAANNNNTTC 3 cut(s) 564, 706, 757
XspI CTAG 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.