FvH4_6g29010

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017187
Physical Location & Seq
Reverse (-)
22382015 .. 22383257
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29010.t1

Sequence Viewer

Length: 891 bp
ATGAGTTTCAAAGCTACCGAGACCGTTCCGTTGTTCCGGAAACCCGTTTCGTTTCGTTCACCCAGCACGTTCCGGTTACTAACCGAAGCTGCTTCTTTCTACGAGTCATACTTGAATAGCCAGTTATCAGTTCCTCCGATTTCAGTCCCAAACCAGCTGAAGCTCTACAACCAACCAGGTCATTCCCATGTTTCCTCACACACTTCACCATTTCCAGTACTTAATGCAAATGTTTCCGACTCCAAAACCGAACCCCCTCCAGTTCTTGACGGAATCGCCGCCGTAGTGGGTGAACACGTGTTGTTCGGAGGTAAAAACGCTGCCAGCAACAACGTAGCCAACTCCGAAAACACCCAAGTTGCGGACTTCGTTAACTTTTCGGTGCGTTTTGGCAGTTCTGGAACTTCGAAAGAAGCGGCTGATAAGAAGGGTACGGGAAACGTTTCAGTGCAGAAGAACTACAGGGGAGTGAGGAAGAGACCCTGGGGAAGGTTTTCGGCGGAGATAAGGGACCGTATAGGGCGTTGCAGACACTGGCTGGGGACTTTCGACACGGCAGAGGAAGCGGCGCGTGCGTATGACTCGGCGGCGAGGAGGCTGAGAGGGGCAAAAGCTCAGACCAACTTTCAAATCCCATCGGTGATTCCACTCTCGTATGGCTCGGCTTCTTCATCAGCTTGTGTTAATATTAATGCTGCGGAGAAAAAGAGTAGAAGTCGTGGGGCTAAATCCAAATCGACGAGGGAGACTAGTTCAGTGGTGGTTACTTCAGTGGCTCAACTGTTTAGTCAGACTCCTGTTCCCAGAACTACTGTTATTGGGAATGGGAATCAGAATCTGGAGCTTGATTTAAAGCTGGGCATGAACTTTGGTTGCAGAGGAAGCTGGTAG

Protein Analysis

297

Amino Acids

32.02

Weight (kDa)

10.08

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 153 - 202 3.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80580
fragaria_vesca FvH4_6g29010
malus_domestica MD17G1219300.v1.1
prunus_persica Prupe.3G094700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133601
rosa_laevigata RLG00000019354
rosa_multiflora Rmu_co8456135.1_g000001
rosa_rugosa Rorug02G0312700
rosa_samantha Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana Rw2G029780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 571
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 7 cut(s) 279, 362, 416, 500, 566, 587, 698
AclI AACGTT 1 cut(s) 441
AcuI CTGAAG 2 cut(s) 179, 753
AcvI CACGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 219, 433
AfiI CCNNNNNNNGG 2 cut(s) 361, 489
AflIII ACRYGT 2 cut(s) 295, 297
AgsI TTSAA 3 cut(s) 10, 115, 629
AhlI ACTAGT 1 cut(s) 749
AjnI CCWGG 2 cut(s) 175, 482
AluBI AGCT 9 cut(s) 14, 89, 157, 163, 614, 677, 844, 856, 885
AluI AGCT 9 cut(s) 14, 89, 157, 163, 614, 677, 844, 856, 885
Alw26I GTCTC 3 cut(s) 14, 472, 740
AlwNI CAGNNNCTG 2 cut(s) 534, 838
Aor13HI TCCGGA 1 cut(s) 36
ApeKI GCWGC 3 cut(s) 89, 320, 695
AseI ATTAAT 1 cut(s) 690
Asp700I GAANNNNTTC 2 cut(s) 442, 493
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 4 cut(s) 51, 198, 302, 652
AsuII TTCGAA 1 cut(s) 407
AvaII GGWCC 1 cut(s) 511
BbrPI CACGTG 1 cut(s) 298
BbvI GCAGC 3 cut(s) 76, 307, 682
BccI CCATC 1 cut(s) 643
BceAI ACGGC 2 cut(s) 266, 570
BciT130I CCWGG 2 cut(s) 177, 484
BcoDI GTCTC 3 cut(s) 14, 472, 740
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 1 cut(s) 750
BfmI CTRYAG 1 cut(s) 460
BisI GCNGC 7 cut(s) 90, 279, 321, 417, 567, 588, 696
BlsI GCNGC 7 cut(s) 91, 280, 322, 418, 568, 589, 697
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 2 cut(s) 177, 484
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 512
BmrFI CCNGG 2 cut(s) 177, 484
BpmI CTGGAG 2 cut(s) 243, 860
Bpu14I TTCGAA 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 298
BsaI GGTCTC 2 cut(s) 14, 472
BsaJI CCNNGG 2 cut(s) 482, 483
BsaWI WCCGGW 2 cut(s) 36, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 489
Bse1I ACTGG 4 cut(s) 121, 215, 260, 539
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 2 cut(s) 177, 484
BseDI CCNNGG 2 cut(s) 482, 483
BseLI CCNNNNNNNGG 2 cut(s) 361, 489
BseMII CTCAG 2 cut(s) 590, 629
BseNI ACTGG 4 cut(s) 121, 215, 260, 539
BseRI GAGGAG 1 cut(s) 607
BseXI GCAGC 3 cut(s) 76, 307, 682
BseYI CCCAGC 3 cut(s) 62, 538, 856
BsgI GTGCAG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 571
BsiSI CCGG 2 cut(s) 37, 73
BslFI GGGAC 3 cut(s) 131, 524, 556
BslI CCNNNNNNNGG 2 cut(s) 361, 489
BsmAI GTCTC 3 cut(s) 14, 472, 740
BsmFI GGGAC 3 cut(s) 131, 524, 556
Bso31I GGTCTC 2 cut(s) 14, 472
Bsp119I TTCGAA 1 cut(s) 407
Bsp13I TCCGGA 1 cut(s) 36
BspACI CCGC 7 cut(s) 279, 362, 416, 500, 566, 587, 698
BspCNI CTCAG 2 cut(s) 591, 628
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 407
BspTNI GGTCTC 2 cut(s) 14, 472
BsrI ACTGG 4 cut(s) 121, 215, 260, 539
BssECI CCNNGG 2 cut(s) 482, 483
Bst2UI CCWGG 2 cut(s) 177, 484
Bst4CI ACNGT 4 cut(s) 25, 515, 783, 814
Bst6I CTCTTC 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 325, 573
BstDEI CTNAG 2 cut(s) 599, 615
BstENI CCTNNNNNAGG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 571
BstHHI GCGC 1 cut(s) 571
BstMAI GTCTC 3 cut(s) 14, 472, 740
BstMWI GCNNNNNNNGC 3 cut(s) 563, 572, 882
BstNI CCWGG 2 cut(s) 177, 484
BstSCI CCNGG 2 cut(s) 175, 482
BstSFI CTRYAG 1 cut(s) 460
BstUI CGCG 1 cut(s) 571
BstV1I GCAGC 3 cut(s) 76, 307, 682
BtsIMutI CAGTG 4 cut(s) 453, 532, 762, 777
Cac8I GCNNGC 2 cut(s) 325, 573
CaiI CAGNNNCTG 2 cut(s) 534, 838
CfoI GCGC 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 511
CsiI ACCWGGT 1 cut(s) 175
Csp6I GTAC 2 cut(s) 218, 432
CviAII CATG 2 cut(s) 188, 862
CviQI GTAC 2 cut(s) 218, 432
DdeI CTNAG 2 cut(s) 599, 615
DraI TTTAAA 1 cut(s) 852
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
EciI GGCGGA 1 cut(s) 515
Eco31I GGTCTC 2 cut(s) 14, 472
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 2 cut(s) 179, 753
Eco72I CACGTG 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 175, 482
FaeI CATG 2 cut(s) 191, 865
FaiI YATR 6 cut(s) 109, 189, 518, 579, 657, 863
FaqI GGGAC 3 cut(s) 131, 524, 556
FatI CATG 2 cut(s) 187, 861
Fnu4HI GCNGC 7 cut(s) 90, 279, 321, 417, 567, 588, 696
Fsp4HI GCNGC 7 cut(s) 90, 279, 321, 417, 567, 588, 696
FspBI CTAG 1 cut(s) 750
GlaI GCGC 1 cut(s) 570
GluI GCNGC 7 cut(s) 90, 279, 321, 417, 567, 588, 696
GsaI CCCAGC 3 cut(s) 66, 542, 860
GsuI CTGGAG 2 cut(s) 243, 860
HapII CCGG 2 cut(s) 37, 73
HhaI GCGC 1 cut(s) 571
Hin1II CATG 2 cut(s) 191, 865
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 8 cut(s) 104, 239, 273, 581, 643, 793, 829, 835
HpaI GTTAAC 1 cut(s) 373
HpaII CCGG 2 cut(s) 37, 73
HphI GGTGA 4 cut(s) 51, 198, 302, 652
Hpy166II GTNNAC 3 cut(s) 59, 293, 373
Hpy188I TCNGA 7 cut(s) 138, 238, 308, 346, 618, 792, 834
Hpy188III TCNNGA 4 cut(s) 37, 266, 399, 839
Hpy8I GTNNAC 3 cut(s) 59, 293, 373
Hpy99I CGWCG 1 cut(s) 742
HpyAV CCTTC 2 cut(s) 421, 483
HpyCH4III ACNGT 4 cut(s) 25, 515, 783, 814
HpyCH4IV ACGT 4 cut(s) 68, 297, 333, 441
HpyCH4V TGCA 4 cut(s) 227, 451, 528, 876
HpyF10VI GCNNNNNNNGC 3 cut(s) 563, 572, 882
HpyF3I CTNAG 2 cut(s) 599, 615
HpySE526I ACGT 4 cut(s) 68, 297, 333, 441
Hsp92II CATG 2 cut(s) 191, 865
HspAI GCGC 1 cut(s) 569
Kpn2I TCCGGA 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 841
Lsp1109I GCAGC 3 cut(s) 76, 307, 682
MabI ACCWGGT 1 cut(s) 175
MaeI CTAG 1 cut(s) 750
MaeII ACGT 4 cut(s) 68, 297, 333, 441
MaeIII GTNAC 2 cut(s) 75, 763
MboII GAAGA 3 cut(s) 466, 487, 660
MlyI GAGTC 4 cut(s) 113, 233, 575, 787
MmeI TCCRAC 1 cut(s) 261
MroI TCCGGA 1 cut(s) 36
MroXI GAANNNNTTC 2 cut(s) 442, 493
MseI TTAA 5 cut(s) 222, 372, 684, 690, 851
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 2 cut(s) 37, 73
MspR9I CCNGG 2 cut(s) 177, 484
MvaI CCWGG 2 cut(s) 177, 484
MvnI CGCG 1 cut(s) 571
MwoI GCNNNNNNNGC 3 cut(s) 563, 572, 882
NlaIII CATG 2 cut(s) 191, 865
NlaIV GGNNCC 1 cut(s) 512
NmeAIII GCCGAG 2 cut(s) 563, 641
NspV TTCGAA 1 cut(s) 407
PasI CCCWGGG 1 cut(s) 483
PdmI GAANNNNTTC 2 cut(s) 442, 493
PfeI GAWTC 4 cut(s) 273, 643, 829, 835
PkrI GCNGC 7 cut(s) 91, 280, 322, 418, 568, 589, 697
PleI GAGTC 4 cut(s) 112, 233, 575, 787
PmaCI CACGTG 1 cut(s) 298
PmlI CACGTG 1 cut(s) 298
PpsI GAGTC 4 cut(s) 112, 233, 575, 787
Ppu21I YACGTR 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 690
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 175, 482
PspCI CACGTG 1 cut(s) 298
PspFI CCCAGC 3 cut(s) 62, 538, 856
PspGI CCWGG 2 cut(s) 175, 482
PspN4I GGNNCC 1 cut(s) 512
PspPI GGNCC 1 cut(s) 511
PstNI CAGNNNCTG 2 cut(s) 534, 838
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 219, 433
RsaNI GTAC 2 cut(s) 218, 432
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 5 cut(s) 222, 372, 684, 690, 851
SatI GCNGC 7 cut(s) 90, 279, 321, 417, 567, 588, 696
Sau96I GGNCC 1 cut(s) 511
ScaI AGTACT 1 cut(s) 219
SchI GAGTC 4 cut(s) 113, 233, 575, 787
ScrFI CCNGG 2 cut(s) 177, 484
SexAI ACCWGGT 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 407
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 186
SpeI ACTAGT 1 cut(s) 749
SsiI CCGC 7 cut(s) 279, 362, 416, 500, 566, 587, 698
SspI AATATT 1 cut(s) 688
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 175, 482
TaaI ACNGT 4 cut(s) 25, 515, 783, 814
TaiI ACGT 4 cut(s) 71, 300, 336, 444
TaqI TCGA 3 cut(s) 407, 549, 737
TatI WGTACW 1 cut(s) 217
TauI GCSGC 4 cut(s) 281, 419, 569, 590
TfiI GAWTC 4 cut(s) 273, 643, 829, 835
Tru1I TTAA 5 cut(s) 222, 372, 684, 690, 851
Tru9I TTAA 5 cut(s) 222, 372, 684, 690, 851
TscAI CASTG 4 cut(s) 453, 539, 762, 777
TseI GCWGC 3 cut(s) 89, 320, 695
TspDTI ATGAA 2 cut(s) 660, 878
TspGWI ACGGA 2 cut(s) 18, 285
TspRI CASTG 4 cut(s) 453, 539, 762, 777
VpaK11BI GGWCC 1 cut(s) 511
VspI ATTAAT 1 cut(s) 690
XagI CCTNNNNNAGG 1 cut(s) 487
XmnI GAANNNNTTC 2 cut(s) 442, 493
XspI CTAG 1 cut(s) 750
ZrmI AGTACT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.