Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017187

Physical Location & Seq

Genomic Coordinates Reverse (-)

54247760 .. 54254703

Gene Structure 6944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG366000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAACTTTTCGAGCTGAAGCTCGTTAACCAACCAAGTCATTCCCATGTTTCGGCCGACGATACTCCACTGTTGGCAGTTAATGCCAACGTTGCCGAGTCCGAAACTGAACCGCCTCCGGTTCTCGACGGAATCGCCGCCGTAGTGGGGGAACACGTTCTGTTCGGGGGCAAAAAGGCTGCTAACAACGAAGTCAACACCGAGAACACCCAAGTTTCCGATTTCGTCAACCTCTCGCTGCGTTTTGGCGGTTCCGAAACTTCGAAAACAGCCGGCGATAAGAAGGACATGGGAAACGTTTCGGTGCAGAAGAACTACAGGGGAGTGAGGAAGAGACCGTGGGGAAGGTTTTCGGCGGAGATAAGGGACCGTATCGGGAGATGCAGACACTGGCTGGGGACTTTCGACACGGCCGAGGAGGCGGCACGTGCGTACGACTCGGCGGCCAGGAGGCTGAGAGGGGCAAAAGCTCAGACCAACTTTCAAATCCCATCGGTGTTTCCAGTCTCGTATGACTCGGCTTCTTCATCAGCTTCTGTTAATAATAATGCGGCGGAGAAAAAGAGAAAAGTGAGCAGAAGTCGCGGAGCTAAACCCAAATCTGTGAGGGAGACCAATTCAGTGGTGGTAACTTCAGTGGCTCAACTGTTTAGTCAGACTCCAATTCCCAGAACTTCTGTTATTGGGAATCGGAATCCGAATCTGGAGCTTGATTTGAAGCTGGGCATGAACTTTGGTTGCAGAGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

250

Amino Acids

27.16

Weight (kDa)

9.87

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	105 - 154	2.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80580
fragaria_vesca	FvH4_6g29010
malus_domestica	MD17G1219300.v1.1
prunus_persica	Prupe.3G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133601
rosa_laevigata	RLG00000019354
rosa_multiflora	Rmu_co8456135.1_g000001
rosa_rugosa	Rorug02G0312700
rosa_samantha	Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana	Rw2G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	585
AciI	CCGC	9 cut(s)	113, 138, 249, 356, 422, 443, 551, 554, 585
AclI	AACGTT	2 cut(s)	90, 297
AcoI	YGGCCR	3 cut(s)	54, 411, 444
AcuI	CTGAAG	2 cut(s)	38, 618
AcvI	CACGTG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	52, 147
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	485, 718
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	8 cut(s)	16, 22, 470, 533, 590, 709, 721, 750
AluI	AGCT	8 cut(s)	16, 22, 470, 533, 590, 709, 721, 750
Alw26I	GTCTC	3 cut(s)	328, 511, 605
AlwNI	CAGNNNCTG	2 cut(s)	390, 536
AoxI	GGCC	3 cut(s)	54, 411, 444
ApeKI	GCWGC	2 cut(s)	179, 238
Asp700I	GAANNNNTTC	4 cut(s)	8, 156, 298, 349
AspS9I	GGNCC	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	367
BbrPI	CACGTG	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	166, 225
BccI	CCATC	1 cut(s)	499
BceAI	ACGGC	2 cut(s)	125, 426
BciT130I	CCWGG	1 cut(s)	448
BcoDI	GTCTC	3 cut(s)	328, 511, 605
BfaI	CTAG	1 cut(s)	751
BfmI	CTRYAG	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	6 cut(s)	138, 180, 239, 423, 444, 552
BlsI	GCNGC	6 cut(s)	139, 181, 240, 424, 445, 553
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	253, 368
BmrFI	CCNGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	725
Bpu14I	TTCGAA	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	428
BsaI	GGTCTC	2 cut(s)	328, 605
BsaJI	CCNNGG	2 cut(s)	338, 414
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 147
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	395, 503
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	338, 414
BseLI	CCNNNNNNNGG	2 cut(s)	52, 147
BseMII	CTCAG	2 cut(s)	446, 485
BseNI	ACTGG	2 cut(s)	395, 503
BseRI	GAGGAG	1 cut(s)	431
BseX3I	CGGCCG	2 cut(s)	54, 411
BseXI	GCAGC	2 cut(s)	166, 225
BseYI	CCCAGC	2 cut(s)	394, 721
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	585
Bsh1285I	CGRYCG	2 cut(s)	57, 414
BshFI	GGCC	3 cut(s)	56, 413, 446
BsiEI	CGRYCG	2 cut(s)	57, 414
BsiSI	CCGG	2 cut(s)	119, 273
BsiWI	CGTACG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	380, 412
BslI	CCNNNNNNNGG	2 cut(s)	52, 147
BsmAI	GTCTC	3 cut(s)	328, 511, 605
BsmFI	GGGAC	2 cut(s)	380, 412
BsnI	GGCC	3 cut(s)	56, 413, 446
Bso31I	GGTCTC	2 cut(s)	328, 605
Bsp119I	TTCGAA	1 cut(s)	263
BspACI	CCGC	9 cut(s)	113, 138, 249, 356, 422, 443, 551, 554, 585
BspANI	GGCC	3 cut(s)	56, 413, 446
BspCNI	CTCAG	2 cut(s)	447, 484
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	253, 368
BspT104I	TTCGAA	1 cut(s)	263
BspTNI	GGTCTC	2 cut(s)	328, 605
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	395, 503
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	338, 414
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	4 cut(s)	72, 339, 371, 648
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	455, 471
BstDSI	CCRYGG	1 cut(s)	338
BstFNI	CGCG	1 cut(s)	585
BstMAI	GTCTC	3 cut(s)	328, 511, 605
BstMCI	CGRYCG	2 cut(s)	57, 414
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 419, 428, 582, 747
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	166, 225
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstZI	CGGCCG	2 cut(s)	54, 411
BsuRI	GGCC	3 cut(s)	56, 413, 446
BtgI	CCRYGG	1 cut(s)	338
BtsIMutI	CAGTG	4 cut(s)	68, 388, 627, 642
Cac8I	GCNNGC	1 cut(s)	274
CaiI	CAGNNNCTG	2 cut(s)	390, 536
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	47, 289, 727
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	455, 471
EaeI	YGGCCR	3 cut(s)	54, 411, 444
EagI	CGGCCG	2 cut(s)	54, 411
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	2 cut(s)	371, 569
EclXI	CGGCCG	2 cut(s)	54, 411
Eco31I	GGTCTC	2 cut(s)	328, 605
Eco47I	GGWCC	1 cut(s)	367
Eco52I	CGGCCG	2 cut(s)	54, 411
Eco57I	CTGAAG	2 cut(s)	38, 618
Eco72I	CACGTG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	50, 292, 730
FaiI	YATR	4 cut(s)	48, 290, 513, 728
FaqI	GGGAC	2 cut(s)	380, 412
FatI	CATG	3 cut(s)	46, 288, 726
Fnu4HI	GCNGC	6 cut(s)	138, 180, 239, 423, 444, 552
Fsp4HI	GCNGC	6 cut(s)	138, 180, 239, 423, 444, 552
FspBI	CTAG	1 cut(s)	751
GluI	GCNGC	6 cut(s)	138, 180, 239, 423, 444, 552
GsaI	CCCAGC	2 cut(s)	398, 725
GsuI	CTGGAG	1 cut(s)	725
HaeIII	GGCC	3 cut(s)	56, 413, 446
HapII	CCGG	2 cut(s)	119, 273
Hin1II	CATG	3 cut(s)	50, 292, 730
HincII	GTYRAC	3 cut(s)	28, 196, 229
HindII	GTYRAC	3 cut(s)	28, 196, 229
HinfI	GANTC	8 cut(s)	98, 132, 437, 515, 658, 688, 694, 700
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	2 cut(s)	119, 273
Hpy166II	GTNNAC	3 cut(s)	28, 196, 229
Hpy188I	TCNGA	7 cut(s)	103, 220, 256, 474, 657, 693, 699
Hpy188III	TCNNGA	3 cut(s)	125, 376, 704
Hpy8I	GTNNAC	3 cut(s)	28, 196, 229
Hpy99I	CGWCG	2 cut(s)	62, 131
HpyAV	CCTTC	2 cut(s)	277, 339
HpyCH4III	ACNGT	4 cut(s)	72, 339, 371, 648
HpyCH4IV	ACGT	4 cut(s)	90, 156, 297, 427
HpyCH4V	TGCA	3 cut(s)	307, 384, 741
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 419, 428, 582, 747
HpyF3I	CTNAG	2 cut(s)	455, 471
HpySE526I	ACGT	4 cut(s)	90, 156, 297, 427
Hsp92II	CATG	3 cut(s)	50, 292, 730
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	587, 706
Lsp1109I	GCAGC	2 cut(s)	166, 225
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	751
MaeII	ACGT	4 cut(s)	90, 156, 297, 427
MaeIII	GTNAC	1 cut(s)	628
MboII	GAAGA	3 cut(s)	322, 343, 516
MluCI	AATT	2 cut(s)	616, 663
MlyI	GAGTC	4 cut(s)	107, 431, 509, 652
MnlI	CCTC	9 cut(s)	126, 242, 321, 409, 412, 444, 452, 600, 737
MroNI	GCCGGC	1 cut(s)	272
MroXI	GAANNNNTTC	4 cut(s)	8, 156, 298, 349
MseI	TTAA	3 cut(s)	27, 81, 540
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	2 cut(s)	119, 273
MspR9I	CCNGG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 419, 428, 582, 747
NaeI	GCCGGC	1 cut(s)	274
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	3 cut(s)	50, 292, 730
NlaIV	GGNNCC	2 cut(s)	253, 368
NmeAIII	GCCGAG	4 cut(s)	121, 419, 439, 497
NspV	TTCGAA	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	274
PdmI	GAANNNNTTC	4 cut(s)	8, 156, 298, 349
PfeI	GAWTC	4 cut(s)	132, 688, 694, 700
Pfl23II	CGTACG	1 cut(s)	432
PkrI	GCNGC	6 cut(s)	139, 181, 240, 424, 445, 553
PleI	GAGTC	4 cut(s)	106, 431, 509, 652
PmaCI	CACGTG	1 cut(s)	428
PmlI	CACGTG	1 cut(s)	428
PpsI	GAGTC	4 cut(s)	106, 431, 509, 652
Ppu21I	YACGTR	1 cut(s)	428
Psp1406I	AACGTT	2 cut(s)	90, 297
Psp6I	CCWGG	1 cut(s)	446
PspCI	CACGTG	1 cut(s)	428
PspFI	CCCAGC	2 cut(s)	394, 721
PspGI	CCWGG	1 cut(s)	446
PspLI	CGTACG	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	253, 368
PspPI	GGNCC	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	390, 536
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	27, 81, 540
SatI	GCNGC	6 cut(s)	138, 180, 239, 423, 444, 552
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	4 cut(s)	107, 431, 509, 652
ScrFI	CCNGG	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	316
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	616, 663
SsiI	CCGC	9 cut(s)	113, 138, 249, 356, 422, 443, 551, 554, 585
SspMI	CTAG	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	446
TaaI	ACNGT	4 cut(s)	72, 339, 371, 648
TaiI	ACGT	4 cut(s)	93, 159, 300, 430
TaqI	TCGA	4 cut(s)	12, 126, 263, 405
TasI	AATT	2 cut(s)	616, 663
TauI	GCSGC	4 cut(s)	140, 425, 446, 554
TfiI	GAWTC	4 cut(s)	132, 688, 694, 700
Tru1I	TTAA	3 cut(s)	27, 81, 540
Tru9I	TTAA	3 cut(s)	27, 81, 540
TscAI	CASTG	4 cut(s)	75, 395, 627, 642
TseI	GCWGC	2 cut(s)	179, 238
TspDTI	ATGAA	3 cut(s)	17, 516, 743
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	4 cut(s)	75, 395, 627, 642
VpaK11BI	GGWCC	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmnI	GAANNNNTTC	4 cut(s)	8, 156, 298, 349
XspI	CTAG	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.