RchiOBHm_Chr2g0133601

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017187
Physical Location & Seq
Reverse (-)
50468961 .. 50470093
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50475

Sequence Viewer

Length: 891 bp
ATGAGTTTTAAAGCTACAGATACCGTTCCGTTCCTCCGGCAGCCCGTTTCATTCCGTTCACCCAACACGTTTCGGTTACTAACTGAAGCTGCTTCATTCTACGAGTCTTACTTAAGTGGCCAGTTCTCAGTTCCTCCGCCTTCGGTGCCTAACCAGCTGAAGCTCGTTAACCAACCAAGTCATTCCCATGTTTCGGCCGACGATACTCCACTGTTGGCAGTTAATGCCAACGTTGCCGAGTCCGAAACCGAACCGCCTCCGGTTCTCGACGGAATCGCCGCCGTAGTGGGGGAACACGTTCTGTTCGGAGGCAAAAAGGCTGCTAACAACGAAGTCAACACCGAGAACACCCAAGTTTCCGATTTCGTCAACCTCTCGCTGCGTTTTGGCGGTTCCGAAACTTCGAAAACAGCCGCCGATAAGGACATGGGAAACGTTTCGGTGCAGAAGAACTACAGGGGAGTGAGGAAGAGACCGTGGGGAAGGTTTTCGGCGGAGATAAGGGACCGTATCGGGAGATGCAGACACTGGCTGGGGACTTTCGACACGGCCGAGGAGGCGGCACGTGCGTACGACTCGGCGGCAAGGAGGCTGAGAGGGGCAAAAGCTCAGACCAACTTTCAAATCCCATCGGTGTTTCCAGTCTCGTATGACTCGGCTTCTTCATCAGCTTCTGTTAATAATAATGCGGCGGAGAAAAAGAGAAAAGTGAGTAGAAGTCGCGGAGCTAAACCCAAATCTGTGAGGGAGACCAATTCAGTGGTGGTAACTTCAGTGGCTCAACTGTTTAGTCAGACTCCAATTCCCAGAACTTCTGTTATTGGGAATCGGAATCCGAATCTGGAGCTTGATTTGAAGCTGGGCATGAACTTTGGTTGCAGAGGAAGCTAG

Protein Analysis

296

Amino Acids

32.22

Weight (kDa)

9.83

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 151 - 200 3.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80580
fragaria_vesca FvH4_6g29010
malus_domestica MD17G1219300.v1.1
prunus_persica Prupe.3G094700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133601
rosa_laevigata RLG00000019354
rosa_multiflora Rmu_co8456135.1_g000001
rosa_rugosa Rorug02G0312700
rosa_samantha Rh2AG366000 Rh2BG371500 Rh2CG349100 Rh2DG388100
rosa_wichuraiana Rw2G029780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccII CGCG 1 cut(s) 723
AclI AACGTT 2 cut(s) 231, 435
AcoI YGGCCR 3 cut(s) 118, 195, 549
AcuI CTGAAG 3 cut(s) 105, 179, 756
AcvI CACGTG 1 cut(s) 566
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 2 cut(s) 193, 288
AflII CTTAAG 1 cut(s) 112
AflIII ACRYGT 2 cut(s) 66, 295
AgsI TTSAA 2 cut(s) 623, 856
Alw26I GTCTC 3 cut(s) 466, 649, 743
AlwNI CAGNNNCTG 2 cut(s) 528, 674
AoxI GGCC 3 cut(s) 118, 195, 549
ApeKI GCWGC 4 cut(s) 40, 89, 320, 379
Asp700I GAANNNNTTC 3 cut(s) 297, 436, 487
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 566
BbvI GCAGC 4 cut(s) 52, 76, 307, 366
BccI CCATC 1 cut(s) 637
BceAI ACGGC 2 cut(s) 266, 564
BcoDI GTCTC 3 cut(s) 466, 649, 743
BfaI CTAG 1 cut(s) 889
BfmI CTRYAG 2 cut(s) 15, 454
BfrI CTTAAG 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 557
BisI GCNGC 9 cut(s) 41, 90, 279, 321, 380, 414, 561, 582, 690
BlsI GCNGC 9 cut(s) 42, 91, 280, 322, 381, 415, 562, 583, 691
Bme18I GGWCC 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 3 cut(s) 147, 394, 506
BmsI GCATC 1 cut(s) 509
BpmI CTGGAG 1 cut(s) 863
Bpu14I TTCGAA 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 566
BsaI GGTCTC 2 cut(s) 466, 743
BsaJI CCNNGG 2 cut(s) 476, 552
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 288
Bse1I ACTGG 3 cut(s) 121, 533, 641
BseDI CCNNGG 2 cut(s) 476, 552
BseLI CCNNNNNNNGG 2 cut(s) 193, 288
BseMII CTCAG 3 cut(s) 141, 584, 623
BseNI ACTGG 3 cut(s) 121, 533, 641
BseRI GAGGAG 1 cut(s) 569
BseX3I CGGCCG 2 cut(s) 195, 549
BseXI GCAGC 4 cut(s) 52, 76, 307, 366
BseYI CCCAGC 2 cut(s) 532, 859
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 723
Bsh1285I CGRYCG 2 cut(s) 198, 552
BshFI GGCC 3 cut(s) 120, 197, 551
BshNI GGYRCC 1 cut(s) 145
BsiEI CGRYCG 2 cut(s) 198, 552
BsiSI CCGG 2 cut(s) 37, 260
BsiWI CGTACG 1 cut(s) 570
BslFI GGGAC 2 cut(s) 518, 550
BslI CCNNNNNNNGG 2 cut(s) 193, 288
BsmAI GTCTC 3 cut(s) 466, 649, 743
BsmFI GGGAC 2 cut(s) 518, 550
BsnI GGCC 3 cut(s) 120, 197, 551
Bso31I GGTCTC 2 cut(s) 466, 743
Bsp119I TTCGAA 1 cut(s) 404
BspANI GGCC 3 cut(s) 120, 197, 551
BspCNI CTCAG 3 cut(s) 140, 585, 622
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 3 cut(s) 147, 394, 506
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 112
BspTNI GGTCTC 2 cut(s) 466, 743
BsrI ACTGG 3 cut(s) 121, 533, 641
BssECI CCNNGG 2 cut(s) 476, 552
Bst4CI ACNGT 5 cut(s) 25, 213, 477, 509, 786
Bst6I CTCTTC 1 cut(s) 464
BstAFI CTTAAG 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 127, 593, 609
BstDSI CCRYGG 1 cut(s) 476
BstFNI CGCG 1 cut(s) 723
BstMAI GTCTC 3 cut(s) 466, 649, 743
BstMCI CGRYCG 2 cut(s) 198, 552
BstMWI GCNNNNNNNGC 7 cut(s) 145, 154, 224, 233, 557, 566, 885
BstSFI CTRYAG 2 cut(s) 15, 454
BstUI CGCG 1 cut(s) 723
BstV1I GCAGC 4 cut(s) 52, 76, 307, 366
BstXI CCANNNNNNTGG 1 cut(s) 760
BstZI CGGCCG 2 cut(s) 195, 549
BsuRI GGCC 3 cut(s) 120, 197, 551
BtgI CCRYGG 1 cut(s) 476
BtsIMutI CAGTG 4 cut(s) 209, 526, 765, 780
CaiI CAGNNNCTG 2 cut(s) 528, 674
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 1 cut(s) 571
CviAII CATG 3 cut(s) 188, 427, 865
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 3 cut(s) 127, 593, 609
DraI TTTAAA 1 cut(s) 10
EaeI YGGCCR 3 cut(s) 118, 195, 549
EagI CGGCCG 2 cut(s) 195, 549
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
EciI GGCGGA 3 cut(s) 126, 509, 707
EclXI CGGCCG 2 cut(s) 195, 549
Eco31I GGTCTC 2 cut(s) 466, 743
Eco47I GGWCC 1 cut(s) 505
Eco52I CGGCCG 2 cut(s) 195, 549
Eco57I CTGAAG 3 cut(s) 105, 179, 756
Eco72I CACGTG 1 cut(s) 566
FaeI CATG 3 cut(s) 191, 430, 868
FaiI YATR 4 cut(s) 189, 428, 651, 866
FaqI GGGAC 2 cut(s) 518, 550
FatI CATG 3 cut(s) 187, 426, 864
Fnu4HI GCNGC 9 cut(s) 41, 90, 279, 321, 380, 414, 561, 582, 690
Fsp4HI GCNGC 9 cut(s) 41, 90, 279, 321, 380, 414, 561, 582, 690
FspBI CTAG 1 cut(s) 889
GluI GCNGC 9 cut(s) 41, 90, 279, 321, 380, 414, 561, 582, 690
GsaI CCCAGC 2 cut(s) 536, 863
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 3 cut(s) 120, 197, 551
HapII CCGG 2 cut(s) 37, 260
Hin1II CATG 3 cut(s) 191, 430, 868
HincII GTYRAC 3 cut(s) 169, 337, 370
HindII GTYRAC 3 cut(s) 169, 337, 370
HinfI GANTC 9 cut(s) 104, 239, 273, 575, 653, 796, 826, 832, 838
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 2 cut(s) 37, 260
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 4 cut(s) 59, 169, 337, 370
Hpy188I TCNGA 8 cut(s) 244, 308, 361, 397, 612, 795, 831, 837
Hpy188III TCNNGA 3 cut(s) 266, 514, 842
Hpy8I GTNNAC 4 cut(s) 59, 169, 337, 370
Hpy99I CGWCG 2 cut(s) 203, 272
HpyAV CCTTC 2 cut(s) 150, 477
HpyCH4III ACNGT 5 cut(s) 25, 213, 477, 509, 786
HpyCH4IV ACGT 5 cut(s) 68, 231, 297, 435, 565
HpyCH4V TGCA 3 cut(s) 445, 522, 879
HpyF10VI GCNNNNNNNGC 7 cut(s) 145, 154, 224, 233, 557, 566, 885
HpyF3I CTNAG 3 cut(s) 127, 593, 609
HpySE526I ACGT 5 cut(s) 68, 231, 297, 435, 565
Hsp92II CATG 3 cut(s) 191, 430, 868
KspAI GTTAAC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 725, 844
Lsp1109I GCAGC 4 cut(s) 52, 76, 307, 366
LweI GCATC 1 cut(s) 509
MaeI CTAG 1 cut(s) 889
MaeII ACGT 5 cut(s) 68, 231, 297, 435, 565
MaeIII GTNAC 2 cut(s) 75, 766
MboII GAAGA 3 cut(s) 460, 481, 654
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 2 cut(s) 754, 801
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 5 cut(s) 113, 248, 569, 647, 790
Mox20I TGGCCA 1 cut(s) 120
MroXI GAANNNNTTC 3 cut(s) 297, 436, 487
MscI TGGCCA 1 cut(s) 120
MseI TTAA 5 cut(s) 9, 113, 168, 222, 678
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 157
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 2 cut(s) 37, 260
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 7 cut(s) 145, 154, 224, 233, 557, 566, 885
NlaIII CATG 3 cut(s) 191, 430, 868
NlaIV GGNNCC 3 cut(s) 147, 394, 506
NmeAIII GCCGAG 4 cut(s) 262, 557, 577, 635
NspV TTCGAA 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PdmI GAANNNNTTC 3 cut(s) 297, 436, 487
PfeI GAWTC 4 cut(s) 273, 826, 832, 838
Pfl23II CGTACG 1 cut(s) 570
PkrI GCNGC 9 cut(s) 42, 91, 280, 322, 381, 415, 562, 583, 691
PleI GAGTC 5 cut(s) 112, 247, 569, 647, 790
PmaCI CACGTG 1 cut(s) 566
PmlI CACGTG 1 cut(s) 566
PpsI GAGTC 5 cut(s) 112, 247, 569, 647, 790
Ppu21I YACGTR 1 cut(s) 566
Psp1406I AACGTT 2 cut(s) 231, 435
PspCI CACGTG 1 cut(s) 566
PspFI CCCAGC 2 cut(s) 532, 859
PspLI CGTACG 1 cut(s) 570
PspN4I GGNNCC 3 cut(s) 147, 394, 506
PspPI GGNCC 1 cut(s) 505
PstNI CAGNNNCTG 2 cut(s) 528, 674
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 5 cut(s) 9, 113, 168, 222, 678
SatI GCNGC 9 cut(s) 41, 90, 279, 321, 380, 414, 561, 582, 690
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 5 cut(s) 113, 248, 569, 647, 790
SfaNI GCATC 1 cut(s) 509
SfcI CTRYAG 2 cut(s) 15, 454
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 754, 801
SspMI CTAG 1 cut(s) 889
TaaI ACNGT 5 cut(s) 25, 213, 477, 509, 786
TaiI ACGT 5 cut(s) 71, 234, 300, 438, 568
TaqI TCGA 3 cut(s) 267, 404, 543
TasI AATT 2 cut(s) 754, 801
TauI GCSGC 5 cut(s) 281, 416, 563, 584, 692
TfiI GAWTC 4 cut(s) 273, 826, 832, 838
Tru1I TTAA 5 cut(s) 9, 113, 168, 222, 678
Tru9I TTAA 5 cut(s) 9, 113, 168, 222, 678
TscAI CASTG 4 cut(s) 216, 533, 765, 780
TseI GCWGC 4 cut(s) 40, 89, 320, 379
TspDTI ATGAA 4 cut(s) 39, 84, 654, 881
TspGWI ACGGA 3 cut(s) 18, 44, 285
TspRI CASTG 4 cut(s) 216, 533, 765, 780
Vha464I CTTAAG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XmnI GAANNNNTTC 3 cut(s) 297, 436, 487
XspI CTAG 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.