Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Forward (+)

85401 .. 88399

Gene Structure 2999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGCAAAGAGACTCCGGCGGAGAAATCCCTAAATCTGATTCGCGGGAGACTCTGTGATCCTAGTTATGTCTTCAGACCTCTTTCCGCTTCGTCAGATAGCAATTACAGTAAATTGAAGTTCATTGTATCAACCTCTATCACGGAGGGATGCAACAACTCGATGTTGCTTCTCGGCCCTCGCGGCTCTGGCAAAGCTGCTGTCTTGGATCTCGKTSTAGGTGAKTTATTGGAGCAGTTTCCTGATTCAGTATCAGTAATCAGATTGAATGGACTCTTGCATAGTGATGATAATTGTGCCTTTAAGGAAATTGCCAAACAGTTGTGCATGGAACACCACCTACTATTCTCCAAAATGGCATCATTCGATGACAATTCACAATTCATTATAGCCATGTTGCGGGCATGTGGACTAGCACATAAGACTATCATCTTTGTGCTTGATGAATTTGACATGTTTGCACAGGGAAAGCAGCGGTTGCTATACAGTKTGCTGGACGATGCTATGCAATCTGTAACCTCACAAGCTGTTGTCGTCGGTATTAGTTCTCGACTGGACGCCGACCAACTTCTGGAGAAAAGAGTGAGATCTCGCTTTTCACACAGAAAATTTTTGTTTCTTCCTCCTTCCAGGGAAGAACTTGACGGTTTGTTTGTACACCTGCTGTCTCTACCAGCAGACTCAGGCTTCCCCAGTGGATATGTTTCTCGGTTCAATGATAAGATTAAGAATTTAACATCAGACACGAGATTTAAAGACATACTTAAGACATTGTTTAATGCTAATTCTACTGTGAACAGTTTCCTGAAGTTTATATTCTGCGCTGTTTCTTTAATGAATTTGGAATCTGGCCTCCTCTCTCTTGAGAACTTCAAAGCAGCACTTTCAAGTATGCAAAGGCAACCAAAGTTGGAAGCCGTTAGAGATTGTTCCGTACTGGAGCTTTATCTTCTGGTCTGTATGAGGAGGTTAGAAGTGAAGGAGCAAAGCTCATACAACTTCATCAGTGTGATGAAAGAGTATAAGGCGATACACGATTCTTTTCATACCTCAGACTACTACGCACAAAATGTCTGCCTAAGGGCATTTGAGCACCTGAGAGAGCGACAAGTTATATGCTATGCAGAGAATAGAGGACAGTCTCAGACAGGAGAGTACCGTTTGCAGAAGCTTTTGATATCAGCCTCTGAGCTTCATCAGGGAATGAGATCTCATGCTTGTTGCCCCGCCATCCTTCTCAAGTTATTGGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

418

Amino Acids

46.76

Weight (kDa)

8.37

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC4_C	PF14629	217 - 407	3e-39	Origin recognition complex (ORC) subunit 4 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	669
Acc36I	ACCTGC	1 cut(s)	669
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccII	CGCG	2 cut(s)	45, 183
AciI	CCGC	7 cut(s)	20, 45, 87, 183, 400, 475, 1227
AclWI	GGATC	2 cut(s)	53, 216
AcsI	RAATTY	4 cut(s)	446, 608, 730, 838
AcuI	CTGAAG	2 cut(s)	58, 827
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	3 cut(s)	657, 936, 1157
AfiI	CCNNNNNNNGG	2 cut(s)	399, 571
AflII	CTTAAG	1 cut(s)	764
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	5 cut(s)	118, 268, 715, 874, 888
AjnI	CCWGG	1 cut(s)	629
AluBI	AGCT	6 cut(s)	197, 527, 943, 990, 1171, 1192
AluI	AGCT	6 cut(s)	197, 527, 943, 990, 1171, 1192
Alw21I	GWGCWC	1 cut(s)	1095
Alw26I	GTCTC	4 cut(s)	5, 43, 672, 1146
AlwI	GGATC	2 cut(s)	53, 216
AlwNI	CAGNNNCTG	1 cut(s)	1187
AoxI	GGCC	2 cut(s)	175, 850
ApeKI	GCWGC	3 cut(s)	197, 472, 878
ApoI	RAATTY	4 cut(s)	446, 608, 730, 838
ArsI	GACNNNNNNTTYG	4 cut(s)	186, 218, 635, 667
Asp700I	GAANNNNTTC	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	2 cut(s)	176, 1249
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	1249
AxyI	CCTNAGG	1 cut(s)	1079
BauI	CACGAG	1 cut(s)	745
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	1095
BbvI	GCAGC	3 cut(s)	184, 484, 890
BccI	CCATC	1 cut(s)	1238
BceAI	ACGGC	1 cut(s)	902
BciT130I	CCWGG	1 cut(s)	631
BcoDI	GTCTC	4 cut(s)	5, 43, 672, 1146
BfaI	CTAG	2 cut(s)	63, 413
BfrI	CTTAAG	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	669
BglI	GCCNNNNNGGC	1 cut(s)	183
BglII	AGATCT	2 cut(s)	587, 1208
BisI	GCNGC	4 cut(s)	184, 198, 473, 879
BlsI	GCNGC	4 cut(s)	185, 199, 474, 880
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	1249
BmgT120I	GGNCC	2 cut(s)	176, 1249
BmrFI	CCNGG	1 cut(s)	631
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	3 cut(s)	140, 368, 490
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	2 cut(s)	593, 959
BpuEI	CTTGAG	2 cut(s)	884, 1223
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 571
Bse1I	ACTGG	3 cut(s)	558, 693, 942
Bse21I	CCTNAGG	1 cut(s)	1079
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	2 cut(s)	155, 1230
BseLI	CCNNNNNNNGG	2 cut(s)	399, 571
BseMII	CTCAG	5 cut(s)	696, 1065, 1088, 1157, 1179
BseNI	ACTGG	3 cut(s)	558, 693, 942
BseRI	GAGGAG	2 cut(s)	845, 979
BseXI	GCAGC	3 cut(s)	184, 484, 890
Bsh1236I	CGCG	2 cut(s)	45, 183
BshFI	GGCC	2 cut(s)	177, 852
BsiHKAI	GWGCWC	1 cut(s)	1095
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	399, 571
BsmAI	GTCTC	4 cut(s)	5, 43, 672, 1146
BsnI	GGCC	2 cut(s)	177, 852
Bsp1286I	GDGCHC	1 cut(s)	1095
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	58, 208, 587, 1208
BspACI	CCGC	7 cut(s)	20, 45, 87, 183, 400, 475, 1227
BspANI	GGCC	2 cut(s)	177, 852
BspCNI	CTCAG	5 cut(s)	695, 1064, 1089, 1156, 1180
BspFNI	CGCG	2 cut(s)	45, 183
BspMI	ACCTGC	1 cut(s)	669
BspPI	GGATC	2 cut(s)	53, 216
BspTI	CTTAAG	1 cut(s)	764
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	558, 693, 942
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	4 cut(s)	58, 208, 587, 1208
BssNI	GRCGYC	1 cut(s)	558
BssSI	CACGAG	1 cut(s)	745
Bst2BI	CACGAG	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	8 cut(s)	110, 321, 488, 647, 793, 800, 1140, 1160
BstACI	GRCGYC	1 cut(s)	558
BstAFI	CTTAAG	1 cut(s)	764
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstAUI	TGTACA	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	6 cut(s)	682, 1051, 1079, 1097, 1143, 1188
BstF5I	GGATG	2 cut(s)	155, 1230
BstFNI	CGCG	2 cut(s)	45, 183
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	4 cut(s)	61, 211, 590, 1211
BstMAI	GTCTC	4 cut(s)	5, 43, 672, 1146
BstMBI	GATC	4 cut(s)	58, 208, 587, 1208
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 189, 478
BstNI	CCWGG	1 cut(s)	631
BstNSI	RCATGY	2 cut(s)	408, 457
BstSCI	CCNGG	1 cut(s)	629
BstUI	CGCG	2 cut(s)	45, 183
BstV1I	GCAGC	3 cut(s)	184, 484, 890
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	3 cut(s)	208, 587, 1208
BstYI	RGATCY	3 cut(s)	208, 587, 1208
Bsu36I	CCTNAGG	1 cut(s)	1079
BsuRI	GGCC	2 cut(s)	177, 852
BtsCI	GGATG	2 cut(s)	155, 1230
BtsIMutI	CAGTG	2 cut(s)	700, 1012
BveI	ACCTGC	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	1187
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	2 cut(s)	176, 1249
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	3 cut(s)	656, 935, 1156
CviAII	CATG	5 cut(s)	328, 394, 405, 454, 1214
CviQI	GTAC	3 cut(s)	656, 935, 1156
DdeI	CTNAG	6 cut(s)	682, 1051, 1079, 1097, 1143, 1188
DpnI	GATC	4 cut(s)	60, 210, 589, 1210
DpnII	GATC	4 cut(s)	58, 208, 587, 1208
DraI	TTTAAA	1 cut(s)	754
EciI	GGCGGA	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	1179
Eco47I	GGWCC	1 cut(s)	1249
Eco57I	CTGAAG	2 cut(s)	58, 827
Eco81I	CCTNAGG	1 cut(s)	1079
EcoRII	CCWGG	1 cut(s)	629
EcoRV	GATATC	1 cut(s)	1179
FaeI	CATG	5 cut(s)	331, 397, 408, 457, 1217
FalI	AAGNNNNNCTT	4 cut(s)	747, 779, 867, 899
FatI	CATG	5 cut(s)	327, 393, 404, 453, 1213
FauI	CCCGC	3 cut(s)	38, 393, 1234
Fnu4HI	GCNGC	4 cut(s)	184, 198, 473, 879
FokI	GGATG	2 cut(s)	162, 1217
Fsp4HI	GCNGC	4 cut(s)	184, 198, 473, 879
FspBI	CTAG	2 cut(s)	63, 413
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	4 cut(s)	184, 198, 473, 879
GsuI	CTGGAG	2 cut(s)	593, 959
HaeIII	GGCC	2 cut(s)	177, 852
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	5 cut(s)	331, 397, 408, 457, 1217
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	8 cut(s)	13, 40, 51, 245, 273, 680, 845, 1037
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	3 cut(s)	410, 658, 796
Hpy188I	TCNGA	8 cut(s)	39, 77, 97, 263, 742, 1054, 1146, 1189
Hpy188III	TCNNGA	5 cut(s)	242, 549, 572, 805, 863
Hpy8I	GTNNAC	3 cut(s)	410, 658, 796
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	3 cut(s)	636, 973, 1244
HpyCH4III	ACNGT	8 cut(s)	110, 321, 488, 647, 793, 800, 1140, 1160
HpyCH4V	TGCA	8 cut(s)	153, 280, 327, 461, 508, 895, 1124, 1165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 189, 478
HpyF3I	CTNAG	6 cut(s)	682, 1051, 1079, 1097, 1143, 1188
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	5 cut(s)	331, 397, 408, 457, 1217
HspAI	GCGC	1 cut(s)	822
Kzo9I	GATC	4 cut(s)	58, 208, 587, 1208
LmnI	GCTCC	3 cut(s)	232, 940, 982
Lsp1109I	GCAGC	3 cut(s)	184, 484, 890
LweI	GCATC	3 cut(s)	140, 368, 490
MaeI	CTAG	2 cut(s)	63, 413
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	4 cut(s)	60, 210, 589, 1210
MboI	GATC	4 cut(s)	58, 208, 587, 1208
MboII	GAAGA	4 cut(s)	64, 611, 647, 941
MflI	RGATCY	3 cut(s)	208, 587, 1208
MhlI	GDGCHC	1 cut(s)	1095
MlyI	GAGTC	4 cut(s)	7, 45, 267, 674
MmeI	TCCRAC	1 cut(s)	891
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	7 cut(s)	303, 726, 734, 753, 765, 777, 833
MslI	CAYNNNNRTG	3 cut(s)	285, 434, 1007
MspA1I	CMGCKG	1 cut(s)	475
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	631
MvnI	CGCG	2 cut(s)	45, 183
MwoI	GCNNNNNNNGC	3 cut(s)	183, 189, 478
NdeII	GATC	4 cut(s)	58, 208, 587, 1208
NlaIII	CATG	5 cut(s)	331, 397, 408, 457, 1217
NmeAIII	GCCGAG	1 cut(s)	153
NspI	RCATGY	2 cut(s)	408, 457
PaqCI	CACCTGC	1 cut(s)	669
PciI	ACATGT	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	4 cut(s)	40, 245, 845, 1037
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	185, 199, 474, 880
PleI	GAGTC	4 cut(s)	7, 45, 267, 674
PpsI	GAGTC	4 cut(s)	7, 45, 267, 674
PscI	ACATGT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	629
PspPI	GGNCC	2 cut(s)	176, 1249
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstNI	CAGNNNCTG	1 cut(s)	1187
PsuI	RGATCY	3 cut(s)	208, 587, 1208
RsaI	GTAC	3 cut(s)	657, 936, 1157
RsaNI	GTAC	3 cut(s)	656, 935, 1156
RseI	CAYNNNNRTG	3 cut(s)	285, 434, 1007
SaqAI	TTAA	7 cut(s)	303, 726, 734, 753, 765, 777, 833
SatI	GCNGC	4 cut(s)	184, 198, 473, 879
Sau3AI	GATC	4 cut(s)	58, 208, 587, 1208
Sau96I	GGNCC	2 cut(s)	176, 1249
SchI	GAGTC	4 cut(s)	7, 45, 267, 674
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	1 cut(s)	1095
SfaNI	GCATC	3 cut(s)	140, 368, 490
SinI	GGWCC	1 cut(s)	1249
SmiMI	CAYNNNNRTG	3 cut(s)	285, 434, 1007
SmlI	CTYRAG	3 cut(s)	764, 863, 1238
SmoI	CTYRAG	3 cut(s)	764, 863, 1238
SsiI	CCGC	7 cut(s)	20, 45, 87, 183, 400, 475, 1227
SspMI	CTAG	2 cut(s)	63, 413
StyD4I	CCNGG	1 cut(s)	629
TaaI	ACNGT	8 cut(s)	110, 321, 488, 647, 793, 800, 1140, 1160
TaqI	TCGA	3 cut(s)	161, 366, 550
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	4 cut(s)	40, 245, 845, 1037
Tru1I	TTAA	7 cut(s)	303, 726, 734, 753, 765, 777, 833
Tru9I	TTAA	7 cut(s)	303, 726, 734, 753, 765, 777, 833
TscAI	CASTG	2 cut(s)	700, 1012
TseI	GCWGC	3 cut(s)	197, 472, 878
TspDTI	ATGAA	8 cut(s)	112, 373, 459, 851, 991, 1028, 1034, 1184
TspGWI	ACGGA	2 cut(s)	158, 922
TspRI	CASTG	2 cut(s)	700, 1012
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	1249
XapI	RAATTY	4 cut(s)	446, 608, 730, 838
XceI	RCATGY	2 cut(s)	408, 457
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	2 cut(s)	63, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.