Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Forward (+)

63931989 .. 63936415

Gene Structure 4427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG328500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGCGTGAAAATCCGGCGGAAAAAGCCCTAATTCTTCTGAGGACCAGACTCTGTGACCCGAATTTCATTTTCCGGCCGCTCTGTGAATCTTCCGACTCAAATTACAGCAAGCTGAAGTTCTTAGTGTCGAGTTCGATTACCGAGGCGTGCAATAACTCTATCCTGCTTCTGGGTCCTCGTGGTTCTGGAAAAATTGCCGTATTGGATCTTGTGATCAGTGATTTATTACAAGAGTATCCTGATACCATTACAGTGATTAGGTTGAGTGGCCTTTTGCATAGCGATGAGAATTGTGCGTTAAAGGAAATTTCTAGACAGCTATGTACGGAGCATCAGTTGTTGTTTTCAAAAATGGCATCATTTGATGAGAACTCCCAGTTTCTGATAGCCATGTTACGGGAATGCGGGTTAGCACATAAAACAATCATTTTTGTGCTGGATGAGTTTGACTTATTTGCTCTGGGAAAACAGCGATTACTTTATAATTTGCTTGATGCACTGCAGTCAGTGACATCTCAAGCTGTTGTTATTGGTGTCAGTTGCCGACTGGATGCGGATCAGCTTTTGGAAAAAAGAGTAATATCTCGATTTTCAAATAGAAAGCTTTTGTTTCTTCCTCCCTCTAAGGAAGACATACAGCGATTGTTGGAGCACATTTTATTATTGCCAACAGACTCGGGCCTTCCTACAGACTATGTTGTTGAGTTCAACGCGAAACTTCAAAACATATTGGCTGATGAGAGGTTCGAAGAGATTATAAACACATATCTAAATATTGATTCCACCGTCAAAGATTTCTTGAGATATCTATTCCGTTCTGTTTCTAATATGGACTTGCAATCTGGAATGCTGTTGCTTGAAAACTTCAAAACTGCACTTTCCAATATCCAAAGGCATCCAAAGATGGAATGCATAAAAGATTGTTCAATATTGGAACTTTACATTTTGGTATGCATGAAGAGGTTGGAAGTTAAAGAGCACAACTCATACAACTTCACAACTGTAATGAAAGAGTACAAAAGCGTACATGATTCGTTCCAGACATCTGACTATTATGCAAAGAATGTGTGCTTACGGGTATGGATTGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

365

Amino Acids

41.8

Weight (kDa)

5.88

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC4_C	PF14629	216 - 362	3.6e-30	Origin recognition complex (ORC) subunit 4 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	486, 761
AccBSI	CCGCTC	1 cut(s)	82
AccII	CGCG	1 cut(s)	716
AciI	CCGC	4 cut(s)	20, 80, 408, 557
AclWI	GGATC	2 cut(s)	216, 567
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	64, 309
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	328, 1019, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	172, 399
AgsI	TTSAA	7 cut(s)	351, 597, 712, 725, 863, 871, 930
AluBI	AGCT	5 cut(s)	115, 322, 524, 565, 607
AluI	AGCT	5 cut(s)	115, 322, 524, 565, 607
Alw21I	GWGCWC	2 cut(s)	657, 984
AlwI	GGATC	2 cut(s)	216, 567
AlwNI	CAGNNNCTG	2 cut(s)	54, 385
Ama87I	CYCGRG	1 cut(s)	679
AoxI	GGCC	3 cut(s)	77, 271, 682
ApoI	RAATTY	2 cut(s)	64, 309
AspS9I	GGNCC	3 cut(s)	45, 176, 682
AsuII	TTCGAA	1 cut(s)	750
AvaI	CYCGRG	1 cut(s)	679
AvaII	GGWCC	2 cut(s)	45, 176
BaeI	ACNNNNGTAYC	2 cut(s)	221, 254
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	2 cut(s)	657, 984
BccI	CCATC	1 cut(s)	901
BceAI	ACGGC	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	249
BclI	TGATCA	1 cut(s)	216
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	2 cut(s)	503, 690
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme18I	GGWCC	2 cut(s)	45, 176
BmeT110I	CYCGRG	1 cut(s)	679
BmgT120I	GGNCC	3 cut(s)	45, 176, 682
BmiI	GGNNCC	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	5 cut(s)	343, 368, 487, 544, 907
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	971, 1003
Bpu14I	TTCGAA	1 cut(s)	750
BpuEI	CTTGAG	2 cut(s)	504, 823
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 399
Bse1I	ACTGG	2 cut(s)	379, 555
Bse8I	GATNNNNATC	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	448, 559, 898
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	172, 399
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	379, 555
BseX3I	CGGCCG	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	716
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	79, 273, 684
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	657, 984
BsiHKCI	CYCGRG	1 cut(s)	679
BsiSI	CCGG	2 cut(s)	17, 76
BslI	CCNNNNNNNGG	2 cut(s)	172, 399
BsmI	GAATGC	3 cut(s)	410, 855, 917
BsnI	GGCC	3 cut(s)	79, 273, 684
BsoBI	CYCGRG	1 cut(s)	679
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	657, 984
Bsp143I	GATC	3 cut(s)	208, 216, 559
BspACI	CCGC	4 cut(s)	20, 80, 408, 557
BspANI	GGCC	3 cut(s)	79, 273, 684
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	716
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	507
BspPI	GGATC	2 cut(s)	216, 567
BspT104I	TTCGAA	1 cut(s)	750
BsrBI	CCGCTC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	379, 555
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	208, 216, 559
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	256, 790, 1006
Bst6I	CTCTTC	2 cut(s)	747, 956
BstBI	TTCGAA	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	113, 151
BstDEI	CTNAG	3 cut(s)	41, 124, 627
BstF5I	GGATG	3 cut(s)	448, 559, 898
BstFNI	CGCG	1 cut(s)	716
BstKTI	GATC	3 cut(s)	211, 219, 562
BstMBI	GATC	3 cut(s)	208, 216, 559
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSFI	CTRYAG	2 cut(s)	503, 690
BstUI	CGCG	1 cut(s)	716
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	79, 273, 684
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	448, 559, 898
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	4 cut(s)	226, 261, 500, 516
Cac8I	GCNNGC	2 cut(s)	113, 151
CaiI	CAGNNNCTG	2 cut(s)	54, 385
Cfr13I	GGNCC	3 cut(s)	45, 176, 682
Csp6I	GTAC	3 cut(s)	327, 1018, 1028
CviAII	CATG	3 cut(s)	394, 958, 1031
CviQI	GTAC	3 cut(s)	327, 1018, 1028
DdeI	CTNAG	3 cut(s)	41, 124, 627
DpnI	GATC	3 cut(s)	210, 218, 561
DpnII	GATC	3 cut(s)	208, 216, 559
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
Eam1104I	CTCTTC	2 cut(s)	747, 956
EarI	CTCTTC	2 cut(s)	747, 956
EciI	GGCGGA	1 cut(s)	35
EclXI	CGGCCG	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	45, 176
Eco52I	CGGCCG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	679
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	809
EcoT22I	ATGCAT	2 cut(s)	917, 959
FaeI	CATG	3 cut(s)	397, 961, 1034
FatI	CATG	3 cut(s)	393, 957, 1030
FauI	CCCGC	1 cut(s)	401
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	3 cut(s)	455, 566, 885
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	79, 273, 684
HapII	CCGG	2 cut(s)	17, 76
Hin1II	CATG	3 cut(s)	397, 961, 1034
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	6 cut(s)	51, 89, 98, 677, 782, 1034
HpaII	CCGG	2 cut(s)	17, 76
Hpy188I	TCNGA	4 cut(s)	42, 97, 387, 1051
Hpy188III	TCNNGA	7 cut(s)	189, 242, 315, 588, 802, 846, 1042
HpyAV	CCTTC	1 cut(s)	695
HpyCH4III	ACNGT	3 cut(s)	256, 790, 1006
HpyCH4V	TGCA	9 cut(s)	153, 280, 500, 505, 841, 878, 915, 957, 1061
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	41, 124, 627
Hsp92II	CATG	3 cut(s)	397, 961, 1034
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	208, 216, 559
LmnI	GCTCC	3 cut(s)	331, 652, 1096
LweI	GCATC	5 cut(s)	343, 368, 487, 544, 907
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	56, 396, 511
MalI	GATC	3 cut(s)	210, 218, 561
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	3 cut(s)	208, 216, 559
MboII	GAAGA	6 cut(s)	29, 84, 608, 644, 764, 973
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	657, 984
MluCI	AATT	7 cut(s)	33, 64, 103, 195, 292, 309, 487
MlyI	GAGTC	3 cut(s)	45, 92, 671
MmeI	TCCRAC	3 cut(s)	120, 630, 948
MnlI	CCTC	7 cut(s)	36, 139, 189, 630, 634, 738, 957
Mph1103I	ATGCAT	2 cut(s)	917, 959
MseI	TTAA	3 cut(s)	302, 975, 1096
MslI	CAYNNNNRTG	3 cut(s)	254, 285, 434
MspI	CCGG	2 cut(s)	17, 76
Mva1269I	GAATGC	3 cut(s)	410, 855, 917
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	208, 216, 559
NlaIII	CATG	3 cut(s)	397, 961, 1034
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	56, 511
NsiI	ATGCAT	2 cut(s)	917, 959
NspV	TTCGAA	1 cut(s)	750
PctI	GAATGC	3 cut(s)	410, 855, 917
PfeI	GAWTC	3 cut(s)	89, 782, 1034
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	3 cut(s)	45, 92, 671
PpsI	GAGTC	3 cut(s)	45, 92, 671
PpuMI	RGGWCCY	1 cut(s)	176
PsiI	TTATAA	2 cut(s)	486, 761
Psp5II	RGGWCCY	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	3 cut(s)	45, 176, 682
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	2 cut(s)	54, 385
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	328, 1019, 1029
RsaNI	GTAC	3 cut(s)	327, 1018, 1028
RseI	CAYNNNNRTG	3 cut(s)	254, 285, 434
SaqAI	TTAA	3 cut(s)	302, 975, 1096
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	3 cut(s)	208, 216, 559
Sau96I	GGNCC	3 cut(s)	45, 176, 682
SchI	GAGTC	3 cut(s)	45, 92, 671
SduI	GDGCHC	2 cut(s)	657, 984
SetI	ASST	8 cut(s)	117, 266, 324, 526, 567, 609, 749, 968
SfaNI	GCATC	5 cut(s)	343, 368, 487, 544, 907
SfcI	CTRYAG	2 cut(s)	503, 690
SfuI	TTCGAA	1 cut(s)	750
SinI	GGWCC	2 cut(s)	45, 176
SmiMI	CAYNNNNRTG	3 cut(s)	254, 285, 434
SmlI	CTYRAG	2 cut(s)	519, 802
SmoI	CTYRAG	2 cut(s)	519, 802
Sse9I	AATT	7 cut(s)	33, 64, 103, 195, 292, 309, 487
SsiI	CCGC	4 cut(s)	20, 80, 408, 557
SspI	AATATT	2 cut(s)	778, 933
SspMI	CTAG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	256, 790, 1006
TaqI	TCGA	4 cut(s)	131, 137, 589, 750
TasI	AATT	7 cut(s)	33, 64, 103, 195, 292, 309, 487
TatI	WGTACW	1 cut(s)	1017
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	89, 782, 1034
Tru1I	TTAA	3 cut(s)	302, 975, 1096
Tru9I	TTAA	3 cut(s)	302, 975, 1096
TscAI	CASTG	4 cut(s)	226, 261, 507, 516
TseFI	GTSAC	2 cut(s)	56, 511
Tsp45I	GTSAC	2 cut(s)	56, 511
TspDTI	ATGAA	3 cut(s)	58, 974, 1025
TspGWI	ACGGA	2 cut(s)	344, 806
TspRI	CASTG	4 cut(s)	226, 261, 507, 516
VpaK11BI	GGWCC	2 cut(s)	45, 176
XapI	RAATTY	2 cut(s)	64, 309
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	2 cut(s)	917, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.