Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Forward (+)

97813 .. 100621

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggggcgagaaaatccggcggaaaaagccctaattcttctgaggaccagactctgtgacccgaatttcattttccggccgctctgtgaatcttccgactcaaattacagcaagctgaagttcttagtgtcgagttcgattaccgaggcgtgcaataactctatcctgcttctgggtcctcgtggttctggaaaaattgctgtattggatcttgtgatcagtgatttattacaagaatatcctgataccgttacagtgattaggttgagtggccttttgcatagtgatgagaattgtgcgttaaaggaaatttctagacagctgtgtacggagcatcagttgttgttttcaaaaatgggaaaacagcgattactttataatttgcttgatgcactgcagtcagtgacatctcaagctgttgttattggtgtcagttgccgactggatgcggatcagcttttggaaaaaagagtaatatctcgattttcaaatagaaagcttttgtttcttcctccctctaaggaagacagacagcgattgttggagcacattttattattgccaacagactcgggccttcctacagactatgttgttgagttcaacgcgaaacttcaagtatccttttcggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

211

Amino Acids

23.69

Weight (kDa)

6.83

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccBSI	CCGCTC	1 cut(s)	82
AccII	CGCG	1 cut(s)	608
AciI	CCGC	3 cut(s)	20, 80, 449
AclWI	GGATC	2 cut(s)	216, 459
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	64, 309
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	351, 489, 604, 617
AluBI	AGCT	5 cut(s)	115, 322, 416, 457, 499
AluI	AGCT	5 cut(s)	115, 322, 416, 457, 499
Alw21I	GWGCWC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	216, 459
AlwNI	CAGNNNCTG	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	571
AoxI	GGCC	3 cut(s)	77, 271, 574
ApoI	RAATTY	2 cut(s)	64, 309
AspS9I	GGNCC	3 cut(s)	45, 176, 574
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	2 cut(s)	45, 176
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	1 cut(s)	216
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	2 cut(s)	395, 582
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme18I	GGWCC	2 cut(s)	45, 176
BmeT110I	CYCGRG	1 cut(s)	571
BmgT120I	GGNCC	3 cut(s)	45, 176, 574
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	3 cut(s)	343, 379, 436
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	447
BseX3I	CGGCCG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	608
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	79, 273, 576
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	17, 76
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	3 cut(s)	79, 273, 576
BsoBI	CYCGRG	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	3 cut(s)	208, 216, 451
BspACI	CCGC	3 cut(s)	20, 80, 449
BspANI	GGCC	3 cut(s)	79, 273, 576
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	2 cut(s)	216, 459
BsrBI	CCGCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	208, 216, 451
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	250, 256
BstC8I	GCNNGC	2 cut(s)	113, 151
BstDEI	CTNAG	3 cut(s)	41, 124, 519
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	608
BstKTI	GATC	3 cut(s)	211, 219, 454
BstMBI	GATC	3 cut(s)	208, 216, 451
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSFI	CTRYAG	2 cut(s)	395, 582
BstUI	CGCG	1 cut(s)	608
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	79, 273, 576
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	4 cut(s)	226, 261, 392, 408
Cac8I	GCNNGC	2 cut(s)	113, 151
CaiI	CAGNNNCTG	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	45, 176, 574
Csp6I	GTAC	1 cut(s)	327
CviJI	RGCY	9 cut(s)	29, 79, 115, 273, 322, 416, 457, 499, 576
CviKI_1	RGCY	9 cut(s)	29, 79, 115, 273, 322, 416, 457, 499, 576
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	3 cut(s)	41, 124, 519
DpnI	GATC	3 cut(s)	210, 218, 453
DpnII	GATC	3 cut(s)	208, 216, 451
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	35
EclXI	CGGCCG	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	45, 176
Eco52I	CGGCCG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	176
FaiI	YATR	3 cut(s)	282, 378, 591
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	79, 273, 576
HapII	CCGG	2 cut(s)	17, 76
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	4 cut(s)	51, 89, 98, 569
HpaII	CCGG	2 cut(s)	17, 76
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	42, 97, 631
Hpy188III	TCNNGA	4 cut(s)	189, 242, 315, 480
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	2 cut(s)	250, 256
HpyCH4V	TGCA	4 cut(s)	153, 280, 392, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	41, 124, 519
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	208, 216, 451
LmnI	GCTCC	2 cut(s)	331, 544
LpnPI	CCDG	8 cut(s)	30, 61, 89, 158, 174, 179, 255, 428
LweI	GCATC	3 cut(s)	343, 379, 436
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	56, 250, 403
MalI	GATC	3 cut(s)	210, 218, 453
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	3 cut(s)	208, 216, 451
MboII	GAAGA	4 cut(s)	29, 84, 500, 536
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	7 cut(s)	33, 64, 103, 195, 292, 309, 379
MlyI	GAGTC	3 cut(s)	45, 92, 563
MmeI	TCCRAC	2 cut(s)	120, 522
MnlI	CCTC	5 cut(s)	36, 139, 189, 522, 526
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	2 cut(s)	17, 76
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	208, 216, 451
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	56, 403
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	3 cut(s)	45, 92, 563
PpsI	GAGTC	3 cut(s)	45, 92, 563
PpuMI	RGGWCCY	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	3 cut(s)	45, 176, 574
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	3 cut(s)	208, 216, 451
Sau96I	GGNCC	3 cut(s)	45, 176, 574
SchI	GAGTC	3 cut(s)	45, 92, 563
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	6 cut(s)	117, 266, 324, 418, 459, 501
SfaNI	GCATC	3 cut(s)	343, 379, 436
SfcI	CTRYAG	2 cut(s)	395, 582
SinI	GGWCC	2 cut(s)	45, 176
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	7 cut(s)	33, 64, 103, 195, 292, 309, 379
SsiI	CCGC	3 cut(s)	20, 80, 449
SspMI	CTAG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	250, 256
TaqI	TCGA	3 cut(s)	131, 137, 481
TasI	AATT	7 cut(s)	33, 64, 103, 195, 292, 309, 379
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	4 cut(s)	226, 261, 399, 408
TseFI	GTSAC	2 cut(s)	56, 403
Tsp45I	GTSAC	2 cut(s)	56, 403
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	4 cut(s)	226, 261, 399, 408
VpaK11BI	GGWCC	2 cut(s)	45, 176
XapI	RAATTY	2 cut(s)	64, 309
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.