Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Reverse (-)

30697499 .. 30704012

Gene Structure 6514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G319900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCGCGAGAAAATCCTGCAGAGAAAGCCCTAGGTCTGCTCCGAAGCAGACTCTGTGACCCCAATTTTGCCTTCAAAGCTCTCTCTCACTCCGACGACTCAAACTACAGCAAGTTGAAATTCTTAGTTTCAAGTTCCATCACCGAAGCATGTAACAACTCCATTCTGCTTCTCGGTCCCCGTGGTTCGGGAAAAATCGCTGTGTTGGAGGTTGTGCTCAGTGATTTATTACAAGAATATCCTGATATGATTTCAGTGATTAGGTTGAGTGGCCTGTTGCATGGCAGTGACAACTGCGCATTTAAGGAAATTGCTAGACAGCTATGCATGGAGCATCAGTTGGTTTTCTCAAGAATGGCATCATTTGATGATAACTCCCAGTTTATGATAGCCATGTTAAGGGAGTGTGGATTAGCACATAAAACAATTATTTTTGTTTTGGATGAGTTTGACTTGTTTGCTCTGGGAAAACAGAAGTTACTTTATAGTTTGCTTGATGCAATGCAGTCAGTAACATCTCAAGCTGTCGTCATTGGTGTGAGCTGCCGACTGGATGCTGATATGCTTTTGGACAAAAGAGTAAGATCTCGTTTTTCACATAGAAAGCTTTTGTTTCTTCCTCCTGCTAACGAAGACATACAGCGATTGTTGGAGCACATTTTATCATTGCCAACAGACTCAAGCTTTCCTCCAGACTATGCTGTTGCCTTCAACGCAAAACTTCAAAATATATTGGCAGATGAGAGATTTAAAGAGATTATTAGTACATATCTGAATTTTGATTCAACTGTCAAACATTTGTTGAGATATCTATTCCGTGCTGTTTCTTATATGGATTTGGAGTCTGGAATGCTGTCACTAGAAAACTTCAAAGCTGCACTTTCAAATATCCAGAGGCATCCAAAGTTGGAATGCATAAAAGATTGCTCCATATTGGAACTTTACATTCTGGTATGCATGAAGAGGTTGGAAGTTAAAGAGCAGAACTCATACAATTTCAATTCTGTAATGAAAGAGTACAAAAGCATACATGATTCGGTCAAGACATCTGACTATTTTGCAAGAAATGTTTGCTTACGGGCATTTGAACACCTTCTACAACGTGAACTGATTGGCTTTACAGACAATAGAGGACAAAACCACTCTATTGAGTTTTCTCCTGTGAAGCTTTTAGTCTCATTCCACGAACTGCACCAGGGCCTGAAATCATATGGTTCTTGTCCCGCCATTCTTCAACAATTAATGGATCGTCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

420

Amino Acids

47.75

Weight (kDa)

7.18

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	298
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	1224
AclWI	GGATC	1 cut(s)	1254
AcsI	RAATTY	2 cut(s)	119, 775
AfaI	GTAC	2 cut(s)	766, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	187, 399
AjnI	CCWGG	1 cut(s)	1194
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	8 cut(s)	80, 322, 524, 543, 607, 684, 875, 1168
AluI	AGCT	8 cut(s)	80, 322, 524, 543, 607, 684, 875, 1168
Alw21I	GWGCWC	2 cut(s)	219, 657
Alw26I	GTCTC	1 cut(s)	1180
AlwI	GGATC	1 cut(s)	1254
AlwNI	CAGNNNCTG	2 cut(s)	54, 1201
AoxI	GGCC	2 cut(s)	271, 1198
ApeKI	GCWGC	2 cut(s)	543, 875
ApoI	RAATTY	2 cut(s)	119, 775
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AseI	ATTAAT	1 cut(s)	1241
Asp700I	GAANNNNTTC	1 cut(s)	1092
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	7, 299
AspS9I	GGNCC	2 cut(s)	176, 1198
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	176
AvrII	CCTAGG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	2 cut(s)	219, 657
BbvI	GCAGC	2 cut(s)	530, 862
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	1196
BcoDI	GTCTC	1 cut(s)	1180
BfaI	CTAG	3 cut(s)	32, 315, 860
BfmI	CTRYAG	2 cut(s)	18, 106
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	2 cut(s)	544, 876
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	2 cut(s)	545, 877
Bme1390I	CCNGG	1 cut(s)	1196
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	176, 1198
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	1196
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	5 cut(s)	343, 368, 487, 544, 907
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	971, 1003
BpmI	CTGGAG	1 cut(s)	675
BpuEI	CTTGAG	3 cut(s)	334, 504, 664
BsaJI	CCNNGG	3 cut(s)	31, 181, 1195
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 399
Bse1I	ACTGG	2 cut(s)	379, 555
Bse3DI	GCAATG	2 cut(s)	507, 665
BseBI	CCWGG	1 cut(s)	1196
BseDI	CCNNGG	3 cut(s)	31, 181, 1195
BseGI	GGATG	3 cut(s)	448, 559, 898
BseLI	CCNNNNNNNGG	2 cut(s)	187, 399
BseMI	GCAATG	2 cut(s)	507, 665
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	379, 555
BseXI	GCAGC	2 cut(s)	530, 862
BsgI	GTGCAG	2 cut(s)	861, 1175
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	273, 1200
BsiHKAI	GWGCWC	2 cut(s)	219, 657
BslFI	GGGAC	2 cut(s)	162, 1206
BslI	CCNNNNNNNGG	2 cut(s)	187, 399
BsmAI	GTCTC	1 cut(s)	1180
BsmFI	GGGAC	2 cut(s)	162, 1206
BsmI	GAATGC	2 cut(s)	855, 917
BsnI	GGCC	2 cut(s)	273, 1200
Bsp1286I	GDGCHC	2 cut(s)	219, 657
Bsp143I	GATC	2 cut(s)	584, 1246
BspACI	CCGC	1 cut(s)	1224
BspANI	GGCC	2 cut(s)	273, 1200
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	1254
BsrDI	GCAATG	2 cut(s)	507, 665
BsrI	ACTGG	2 cut(s)	379, 555
BssECI	CCNNGG	3 cut(s)	31, 181, 1195
BssMI	GATC	2 cut(s)	584, 1246
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	1196
Bst4CI	ACNGT	1 cut(s)	790
Bst6I	CTCTTC	1 cut(s)	956
BstDEI	CTNAG	2 cut(s)	124, 218
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	448, 559, 898
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	2 cut(s)	7, 299
BstKTI	GATC	2 cut(s)	587, 1249
BstMAI	GTCTC	1 cut(s)	1180
BstMBI	GATC	2 cut(s)	584, 1246
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 77, 713
BstNI	CCWGG	1 cut(s)	1196
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	1194
BstSFI	CTRYAG	2 cut(s)	18, 106
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	530, 862
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	273, 1200
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	448, 559, 898
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	3 cut(s)	226, 261, 292
CaiI	CAGNNNCTG	2 cut(s)	54, 1201
CfoI	GCGC	2 cut(s)	7, 299
Cfr13I	GGNCC	2 cut(s)	176, 1198
Csp6I	GTAC	2 cut(s)	765, 1018
CviAII	CATG	6 cut(s)	150, 281, 328, 394, 958, 1031
CviQI	GTAC	2 cut(s)	765, 1018
DdeI	CTNAG	2 cut(s)	124, 218
DpnI	GATC	2 cut(s)	586, 1248
DpnII	GATC	2 cut(s)	584, 1246
DraI	TTTAAA	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
Eco130I	CCWWGG	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	809
Eco47I	GGWCC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	1198
EcoRII	CCWGG	1 cut(s)	1194
EcoRV	GATATC	1 cut(s)	809
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	3 cut(s)	329, 917, 959
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	6 cut(s)	153, 284, 331, 397, 961, 1034
FalI	AAGNNNNNCTT	2 cut(s)	864, 896
FaqI	GGGAC	2 cut(s)	162, 1206
FatI	CATG	6 cut(s)	149, 280, 327, 393, 957, 1030
FauI	CCCGC	1 cut(s)	1231
FauNDI	CATATG	1 cut(s)	1210
Fnu4HI	GCNGC	2 cut(s)	544, 876
FokI	GGATG	3 cut(s)	455, 566, 885
Fsp4HI	GCNGC	2 cut(s)	544, 876
FspBI	CTAG	3 cut(s)	32, 315, 860
FspI	TGCGCA	1 cut(s)	298
GlaI	GCGC	2 cut(s)	6, 298
GluI	GCNGC	2 cut(s)	544, 876
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	273, 1200
HhaI	GCGC	2 cut(s)	7, 299
Hin1II	CATG	6 cut(s)	153, 284, 331, 397, 961, 1034
Hin6I	GCGC	2 cut(s)	5, 297
HinP1I	GCGC	2 cut(s)	5, 297
HindIII	AAGCTT	3 cut(s)	605, 682, 1166
HinfI	GANTC	6 cut(s)	51, 98, 677, 782, 842, 1034
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	1106
Hpy188I	TCNGA	4 cut(s)	44, 94, 774, 1051
Hpy188III	TCNNGA	7 cut(s)	189, 242, 351, 692, 846, 892, 1042
Hpy8I	GTNNAC	1 cut(s)	1106
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	82, 718, 1103
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4IV	ACGT	1 cut(s)	1102
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 77, 713
HpyF3I	CTNAG	2 cut(s)	124, 218
HpySE526I	ACGT	1 cut(s)	1102
Hsp92II	CATG	6 cut(s)	153, 284, 331, 397, 961, 1034
HspAI	GCGC	2 cut(s)	5, 297
Kzo9I	GATC	2 cut(s)	584, 1246
LmnI	GCTCC	4 cut(s)	45, 331, 652, 932
Lsp1109I	GCAGC	2 cut(s)	530, 862
LweI	GCATC	5 cut(s)	343, 368, 487, 544, 907
MaeI	CTAG	3 cut(s)	32, 315, 860
MaeII	ACGT	1 cut(s)	1102
MaeIII	GTNAC	6 cut(s)	56, 152, 287, 477, 511, 855
MalI	GATC	2 cut(s)	586, 1248
MboI	GATC	2 cut(s)	584, 1246
MboII	GAAGA	4 cut(s)	608, 644, 973, 1223
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	219, 657
MluCI	AATT	8 cut(s)	64, 119, 309, 426, 775, 994, 1000, 1238
MlyI	GAGTC	4 cut(s)	45, 92, 671, 851
MmeI	TCCRAC	5 cut(s)	117, 186, 630, 888, 948
MnlI	CCTC	6 cut(s)	202, 630, 699, 888, 957, 1124
Mph1103I	ATGCAT	3 cut(s)	329, 917, 959
MroXI	GAANNNNTTC	1 cut(s)	1092
MseI	TTAA	5 cut(s)	303, 398, 750, 975, 1241
MslI	CAYNNNNRTG	2 cut(s)	285, 536
MspR9I	CCNGG	1 cut(s)	1196
Mva1269I	GAATGC	2 cut(s)	855, 917
MvaI	CCWGG	1 cut(s)	1196
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	26, 77, 713
NdeI	CATATG	1 cut(s)	1210
NdeII	GATC	2 cut(s)	584, 1246
NlaIII	CATG	6 cut(s)	153, 284, 331, 397, 961, 1034
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	3 cut(s)	56, 287, 855
NsbI	TGCGCA	1 cut(s)	298
NsiI	ATGCAT	3 cut(s)	329, 917, 959
NspI	RCATGY	1 cut(s)	153
PctI	GAATGC	2 cut(s)	855, 917
PdmI	GAANNNNTTC	1 cut(s)	1092
PfeI	GAWTC	2 cut(s)	782, 1034
PkrI	GCNGC	2 cut(s)	545, 877
PleI	GAGTC	4 cut(s)	45, 92, 671, 850
PpsI	GAGTC	4 cut(s)	45, 92, 671, 850
PshBI	ATTAAT	1 cut(s)	1241
Psp6I	CCWGG	1 cut(s)	1194
PspGI	CCWGG	1 cut(s)	1194
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	176, 1198
PsrI	GAACNNNNNNTAC	2 cut(s)	1080, 1112
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	2 cut(s)	54, 1201
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	2 cut(s)	766, 1019
RsaNI	GTAC	2 cut(s)	765, 1018
RseI	CAYNNNNRTG	2 cut(s)	285, 536
SaqAI	TTAA	5 cut(s)	303, 398, 750, 975, 1241
SatI	GCNGC	2 cut(s)	544, 876
Sau3AI	GATC	2 cut(s)	584, 1246
Sau96I	GGNCC	2 cut(s)	176, 1198
SchI	GAGTC	4 cut(s)	45, 92, 671, 851
ScrFI	CCNGG	1 cut(s)	1196
SduI	GDGCHC	2 cut(s)	219, 657
SfaNI	GCATC	5 cut(s)	343, 368, 487, 544, 907
SfcI	CTRYAG	2 cut(s)	18, 106
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	285, 536
SmlI	CTYRAG	3 cut(s)	349, 519, 679
SmoI	CTYRAG	3 cut(s)	349, 519, 679
Sse9I	AATT	8 cut(s)	64, 119, 309, 426, 775, 994, 1000, 1238
SsiI	CCGC	1 cut(s)	1224
SspMI	CTAG	3 cut(s)	32, 315, 860
StyD4I	CCNGG	1 cut(s)	1194
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	790
TaiI	ACGT	1 cut(s)	1105
TaqII	GACCGA	2 cut(s)	164, 1027
TasI	AATT	8 cut(s)	64, 119, 309, 426, 775, 994, 1000, 1238
TatI	WGTACW	2 cut(s)	764, 1017
TfiI	GAWTC	2 cut(s)	782, 1034
Tru1I	TTAA	5 cut(s)	303, 398, 750, 975, 1241
Tru9I	TTAA	5 cut(s)	303, 398, 750, 975, 1241
TscAI	CASTG	3 cut(s)	226, 261, 292
TseFI	GTSAC	3 cut(s)	56, 287, 855
TseI	GCWGC	2 cut(s)	543, 875
Tsp45I	GTSAC	3 cut(s)	56, 287, 855
TspDTI	ATGAA	2 cut(s)	974, 1025
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	3 cut(s)	226, 261, 292
VpaK11BI	GGWCC	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	1241
XapI	RAATTY	2 cut(s)	119, 775
XceI	RCATGY	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	1092
XspI	CTAG	3 cut(s)	32, 315, 860
Zsp2I	ATGCAT	3 cut(s)	329, 917, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.