Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Forward (+)

1934293 .. 1935996

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGACATTGTGCTGCAGATTAGGTTGAGTGGCCTTTTACGTAGCAGTGACATCTGCGCGTTCAAGGAAATCGCTAGGCAGCTATGCATGGAGCATCAGTTGGTGTTCTCAAGAATGGCATCGTTTGATGATAACTCCCAGTTTATGATAGCCATGTTAAGGGAGTGTGGATTAGCACATAAAACAATTATCTTTGTGCTCGATGAGTTTGACTTGTTTGCTGTTAATAAAAATAAACAACCAGTAACTCTAATATTTCTCTTCATTTATGGTTCCTTACAGATAAAACAGAGATTGCTTTATAGTTTACTTGATGCAATGCAGTCAGTGACATCTCAAGCTGTTGTCACTGGTGTGAGTTCGCGACTGGATGCTGATATGCTTTTGGACAAAAAGAGTGATCGATCTCGGTTTTCACATAGAAAGCTTTTGTTTCTTCCTCCTGCTTATGAAGACATACAACAATTGTTGGAGCACATTTTACTATTGCCAACAGACTCGAGCTTTCCTCCAGACTATGCTATTGTATTCAATGTCAAACTTCAAGTATCCTTTCGCAAGCATTCGAACACCTCCGACAACGTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

197

Amino Acids

22.44

Weight (kDa)

6.96

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 364
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	64, 532, 545
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	5 cut(s)	82, 341, 427, 504, 588
AluI	AGCT	5 cut(s)	82, 341, 427, 504, 588
Alw21I	GWGCWC	2 cut(s)	201, 477
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	13, 79
AspLEI	GCGC	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	566
AvaI	CYCGRG	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	201, 477
BbvI	GCAGC	1 cut(s)	91
BciVI	GTATCC	1 cut(s)	559
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	2 cut(s)	14, 80
BlsI	GCNGC	2 cut(s)	15, 81
BmeT110I	CYCGRG	1 cut(s)	499
BmiI	GGNNCC	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	4 cut(s)	103, 128, 304, 361
BmuI	ACTGGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	94, 321
Bsa29I	ATCGAT	1 cut(s)	403
BsaAI	YACGTR	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	4 cut(s)	139, 242, 355, 372
Bse3DI	GCAATG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	403
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	324
BseNI	ACTGG	4 cut(s)	139, 242, 355, 372
BseXI	GCAGC	1 cut(s)	91
Bsh1236I	CGCG	2 cut(s)	59, 364
BshFI	GGCC	1 cut(s)	33
BshVI	ATCGAT	1 cut(s)	403
BsiHKAI	GWGCWC	2 cut(s)	201, 477
BsiHKCI	CYCGRG	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	201, 477
Bsp143I	GATC	2 cut(s)	400, 404
Bsp68I	TCGCGA	1 cut(s)	364
BspANI	GGCC	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	59, 364
BspLI	GGNNCC	1 cut(s)	274
BspMAI	CTGCAG	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	4 cut(s)	139, 242, 355, 372
BssMI	GATC	2 cut(s)	400, 404
Bst6I	CTCTTC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	2 cut(s)	59, 364
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	403, 407
BstMBI	GATC	2 cut(s)	400, 404
BstSFI	CTRYAG	1 cut(s)	14
BstSNI	TACGTA	1 cut(s)	41
BstUI	CGCG	2 cut(s)	59, 364
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	459
Bsu15I	ATCGAT	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	3 cut(s)	52, 333, 348
BtuMI	TCGCGA	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	560
CfoI	GCGC	1 cut(s)	59
ClaI	ATCGAT	1 cut(s)	403
CviAII	CATG	2 cut(s)	88, 154
CviJI	RGCY	7 cut(s)	33, 82, 152, 341, 427, 504, 588
CviKI_1	RGCY	7 cut(s)	33, 82, 152, 341, 427, 504, 588
DpnI	GATC	2 cut(s)	402, 406
DpnII	GATC	2 cut(s)	400, 404
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco105I	TACGTA	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	89
FaeI	CATG	2 cut(s)	91, 157
FatI	CATG	2 cut(s)	87, 153
Fnu4HI	GCNGC	2 cut(s)	14, 80
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	14, 80
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	14, 80
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	91, 157
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	577
Hpy188III	TCNNGA	3 cut(s)	111, 363, 512
Hpy8I	GTNNAC	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	40, 582
HpyCH4V	TGCA	4 cut(s)	16, 87, 317, 322
HpySE526I	ACGT	2 cut(s)	40, 582
Hsp92II	CATG	2 cut(s)	91, 157
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	400, 404
LmnI	GCTCC	2 cut(s)	91, 472
LpnPI	CCDG	6 cut(s)	152, 255, 336, 353, 456, 525
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	4 cut(s)	103, 128, 304, 361
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	2 cut(s)	40, 582
MaeIII	GTNAC	4 cut(s)	47, 244, 328, 346
MalI	GATC	2 cut(s)	402, 406
MboI	GATC	2 cut(s)	400, 404
MboII	GAAGA	3 cut(s)	253, 428, 464
MfeI	CAATTG	1 cut(s)	464
MhlI	GDGCHC	2 cut(s)	201, 477
MluCI	AATT	2 cut(s)	186, 464
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	3 cut(s)	450, 519, 583
Mph1103I	ATGCAT	1 cut(s)	89
MseI	TTAA	2 cut(s)	158, 225
MslI	CAYNNNNRTG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	562
MvnI	CGCG	2 cut(s)	59, 364
NdeII	GATC	2 cut(s)	400, 404
NlaIII	CATG	2 cut(s)	91, 157
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	3 cut(s)	47, 328, 346
NruI	TCGCGA	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	566
OliI	CACNNNNGTG	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	499
PctI	GAATGC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	15, 81
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
Ppu21I	YACGTR	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	18
RruI	TCGCGA	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	158, 225
SatI	GCNGC	2 cut(s)	14, 80
Sau3AI	GATC	2 cut(s)	400, 404
SchI	GAGTC	1 cut(s)	491
SduI	GDGCHC	2 cut(s)	201, 477
SetI	ASST	9 cut(s)	26, 43, 84, 343, 429, 506, 575, 585, 590
SfaNI	GCATC	4 cut(s)	103, 128, 304, 361
SfcI	CTRYAG	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	499
SfuI	TTCGAA	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	3 cut(s)	109, 336, 499
SmoI	CTYRAG	3 cut(s)	109, 336, 499
SnaBI	TACGTA	1 cut(s)	41
Sse9I	AATT	2 cut(s)	186, 464
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	75
TaiI	ACGT	2 cut(s)	43, 585
TaqI	TCGA	4 cut(s)	201, 403, 500, 566
TasI	AATT	2 cut(s)	186, 464
Tru1I	TTAA	2 cut(s)	158, 225
Tru9I	TTAA	2 cut(s)	158, 225
TscAI	CASTG	3 cut(s)	52, 333, 355
TseFI	GTSAC	3 cut(s)	47, 328, 346
TseI	GCWGC	2 cut(s)	13, 79
Tsp45I	GTSAC	3 cut(s)	47, 328, 346
TspDTI	ATGAA	2 cut(s)	253, 465
TspRI	CASTG	3 cut(s)	52, 333, 355
XhoI	CTCGAG	1 cut(s)	499
XspI	CTAG	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.