Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Reverse (-)

44536312 .. 44537152

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0272800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTGTTTTCACTTACGAAACCGAATTCACCTCGGTCATCCCACCACCAAGGTTGTTCAAGGCCTTTGTTCTTGATGCCGATAACCTCGTCCCTAAGATTGCTCCACAAGCAGTTAAGAGCGCTGAAGTCATTGAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATCCACCTTGGTGAAGGAAGCGAATACAGCTATGTGAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTGTACAACTACAGTATCATTGAAGGTGATGCTATCGGAGACAAAGTTGAGAAAATCTCATACGAGATTAAGTTGGTCGCATCTGCTGATGGAGGTTCCATCATCAAGAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAGATTAAAGAAGAGCATGTCAAGGCCGGAAAAGAAAGAGCCGCTGGATTGTTCAAGATTATTGAGCTCTACCTTTTGGGCAATCCTGATGCCTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

5.23

Isoelectric Point (pI)

19.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 153	2.3e-22	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	245
AfeI	AGCGCT	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	61, 137, 263, 436
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	198, 448
AluI	AGCT	2 cut(s)	198, 448
Alw21I	GWGCWC	2 cut(s)	353, 450
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	2 cut(s)	63, 405
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	125
AsuHPI	GGTGA	5 cut(s)	22, 152, 191, 278, 386
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	353, 450
BccI	CCATC	5 cut(s)	137, 167, 212, 323, 347
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	157, 337
BmsI	GCATC	5 cut(s)	67, 217, 259, 329, 460
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BsaJI	CCNNGG	3 cut(s)	33, 50, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bse3DI	GCAATG	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	33, 50, 175
BseGI	GGATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	364
BshFI	GGCC	2 cut(s)	65, 407
BsiHKAI	GWGCWC	2 cut(s)	353, 450
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	65, 407
Bsp1286I	GDGCHC	2 cut(s)	353, 450
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	65, 407
BspLI	GGNNCC	2 cut(s)	157, 337
BspPI	GGATC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	33, 50, 175
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	50, 175
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 195
BstNSI	RCATGY	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	65, 407
BtsCI	GGATG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	4 cut(s)	36, 71, 347, 382
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	6 cut(s)	65, 198, 357, 407, 422, 448
CviKI_1	RGCY	6 cut(s)	65, 198, 357, 407, 422, 448
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	50, 175
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	450
Eco47III	AGCGCT	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	26
EcoT14I	CCWWGG	2 cut(s)	50, 175
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	50, 175
FaeI	CATG	1 cut(s)	401
FaiI	YATR	3 cut(s)	201, 301, 399
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	423
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	65, 407
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	401
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	5 cut(s)	22, 152, 191, 278, 386
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	213, 278
Hpy188III	TCNNGA	5 cut(s)	74, 163, 346, 436, 467
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	131, 176, 257
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	1 cut(s)	369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 195
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	401
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	168
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	3 cut(s)	367, 411, 421
LweI	GCATC	5 cut(s)	67, 217, 259, 329, 460
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	2 cut(s)	178, 404
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	353, 450
MluCI	AATT	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	43, 98, 140, 326, 370
MseI	TTAA	3 cut(s)	117, 309, 387
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	110, 195
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	2 cut(s)	157, 337
NspI	RCATGY	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	387
PkrI	GCNGC	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	157, 337
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	117, 309, 387
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	353, 450
SfaNI	GCATC	5 cut(s)	67, 217, 259, 329, 460
SfcI	CTRYAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	26
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	50, 175
TaaI	ACNGT	1 cut(s)	254
TaqII	GACCGA	1 cut(s)	25
TasI	AATT	1 cut(s)	26
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	117, 309, 387
Tru9I	TTAA	3 cut(s)	117, 309, 387
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.