Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Forward (+)

2300518 .. 2302274

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1032700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAAATGGTTTGCTTGGTCAGACAGCTCAAACGAGCATATTTTTTACTTGATGCAATGCAGTCAGTAACATCTCAAGCTGTTGTCATTGGTGTGAGTTTGCGACTGGATGCTGATATGCTTTTGGACAAAAGAGTAAGATCTCGGTTTTCACATAGAAAGCCTTTGTTTCTTCCTCCTGCTTATGAAGACATACAACGATTGTTGGAGCACATTTTACTATTGCCAACAGACTCGAGCTTTCCTCCAGACTATGCTATTGTATTCAATGCAAAACTTAAAACTATATTGGCTGACGAGAGATTTAAAGAGATTGTTAATACATACCTGAATCTTGATTCAACTGTCAAACATTTGTTGAGATATCTATTCCCCGCTGTTTCTGATATGGATTTAGAATCTGGAATGCTGTCGCTAGAAAACTTCAAAACCACACTTTCTAATATCCAATTGCAACCAAAGTTGGAATGCATAAAAGATTGCTCAGTATTGGAACTTTACATTCTGGTATGCATGAAGAGGTTGGAAGTTAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

180

Amino Acids

20.71

Weight (kDa)

8.31

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC4_C	PF14629	68 - 177	1.3e-21	Origin recognition complex (ORC) subunit 4 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	268, 342, 427
AluBI	AGCT	3 cut(s)	28, 80, 240
AluI	AGCT	3 cut(s)	28, 80, 240
Alw21I	GWGCWC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	416
BglII	AGATCT	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	43, 100
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	235
BsmI	GAATGC	2 cut(s)	411, 473
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	484
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	115
CviAII	CATG	1 cut(s)	514
CviJI	RGCY	5 cut(s)	28, 80, 163, 240, 293
CviKI_1	RGCY	5 cut(s)	28, 80, 163, 240, 293
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DraI	TTTAAA	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco32I	GATATC	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	365
EcoT22I	ATGCAT	2 cut(s)	473, 515
FaeI	CATG	1 cut(s)	517
FatI	CATG	1 cut(s)	513
FauI	CCCGC	1 cut(s)	382
FokI	GGATG	1 cut(s)	122
FspBI	CTAG	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	231
Hin1II	CATG	1 cut(s)	517
HinfI	GANTC	4 cut(s)	233, 331, 338, 398
Hpy188I	TCNGA	2 cut(s)	23, 385
Hpy188III	TCNNGA	3 cut(s)	248, 335, 402
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	56, 61, 272, 454, 471, 513
HpyF3I	CTNAG	1 cut(s)	484
Hsp92II	CATG	1 cut(s)	517
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	92, 192, 261, 341, 387, 491
LweI	GCATC	2 cut(s)	43, 100
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	3 cut(s)	164, 200, 529
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	186, 444, 504
MnlI	CCTC	3 cut(s)	186, 255, 513
Mph1103I	ATGCAT	2 cut(s)	473, 515
MseI	TTAA	4 cut(s)	279, 306, 318, 531
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	449
Mva1269I	GAATGC	2 cut(s)	411, 473
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	517
NsiI	ATGCAT	2 cut(s)	473, 515
PaeR7I	CTCGAG	1 cut(s)	235
PctI	GAATGC	2 cut(s)	411, 473
PfeI	GAWTC	3 cut(s)	331, 338, 398
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspXI	VCTCGAGB	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	279, 306, 318, 531
Sau3AI	GATC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	5 cut(s)	30, 82, 242, 330, 524
SfaNI	GCATC	2 cut(s)	43, 100
Sfr274I	CTCGAG	1 cut(s)	235
SlaI	CTCGAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	75, 235
SmoI	CTYRAG	2 cut(s)	75, 235
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	449
TfiI	GAWTC	3 cut(s)	331, 338, 398
Tru1I	TTAA	4 cut(s)	279, 306, 318, 531
Tru9I	TTAA	4 cut(s)	279, 306, 318, 531
TspDTI	ATGAA	3 cut(s)	17, 201, 530
XhoI	CTCGAG	1 cut(s)	235
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	2 cut(s)	473, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.