Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008436

Physical Location & Seq

Genomic Coordinates Forward (+)

27796709 .. 27800493

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGGGGAGAAAATCCGGCGGAGAAAGCCCTAATTCTTCTGAGGACCAGGCTTTGTGACCCGAATTTCATATTCCGGCCACTTTGTGAATCTTCCGACTCCAACTACAGCAAGCTCAAGTTTTTGGTGTCGAGTTCGGTAACGGAGGGGTGCAACAACTCAATTCTGCTTCTGGGTCCTCGTGGTTCTGGGAAAATCGCTGTATTGGATCTTGTGATTGGTGATTTGTTACAAGAATATCCTGATTCGATTACAGTGATCAGGTTGAGTGGCCTTTTGCATAGCGATGAGAATTGTGCATTAAAGGAGATTTCTAGACAGCTATGTACGGAGCATCAGTTATTATTTTCAAAAATGGCATCGTTTGATGAAAACTCCCAGTTTCTGGTAGCCATGTTACGGGAATGCGGGTTAGCACATAAAACAATCATTTTTGTGCTGGATGAGTTTGACTTATTTGCTCTGGGAAAACAGCGATTACTTTATAATTTGCTTGATGCTCTACAGTCAGTGACATCTCAAGCTGTTGTCATTGGTGTCAGTTGCCGACTGGATGCGGATCAGCTTTTGGAAAAAAGAGTAATATCTCGATTTTCAAATAGGAAGCTTTTGTTTCTTCCTCCCTCTAAGGAAGACATACAACGATTGTTGGAGTACATTTTATTATTGCCAACAGACTCAAGCCTTCCTACAGACTATGTTGTTGAGTTCAACGCGAAACTTCAAAACATATTGGCTGATGAGAAGTTCAAAGAGATTATAAACACATATCTAAATTTTGATTCCACTGTCAAAGATTTTTTGAGATATCTATTCCGTGCTGTTTCTAATATGGATCTGCAATCTGGAATGCTATCGCTAGAAAACTTCAAAACTGCACTTTCCAATATCCAAAGGCATCCAAAGATGGAATCCATAAAAGATTGCTCAATATTGGAACTTTATCTTTTGGTATGCATGAAGAGGTTGGAAGTTAAAGAGCAGAACTCATACAATTTCACTGCTGTAATGAAAGAGTACAAATGCGTACATGATTCGTTCCAGACATCAGACTATTATGCAAAGAATGTGTGCTTGCGGGCATTTGAACACCTTCTGCAACGTGGACTGATTGAATTTATGGACAACAGAGGGCAAAACCAATCTGTTGAATACCGTCCTGTGAAACTTCTAATCTCATTTCAGCAACTACATCAGGGCCTGAAATCATATCGTTCATGTCCTGCCATTCTTCAGAAAATAATGGATCGTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0036094 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA AAA_16 ORC4_C

Protein Analysis

420

Amino Acids

48.01

Weight (kDa)

6.67

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC4_C	PF14629	217 - 400	4.8e-41	Origin recognition complex (ORC) subunit 4 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01120 AT2G01120
fragaria_vesca	FvH4_4g26400 FvH4_4g26400 FvH4_4g26400
malus_domestica	MD13G1032700.v1.1 MD16G1034700.v1.1
prunus_persica	Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1 Prupe.1G319900_v2.0.a1
pyrus_communis	pycom13g02820 pycom16g02950
rosa_chinensis	RchiOBHm_Chr4g0434031
rosa_laevigata	RLG00000006707
rosa_multiflora	Rmu_sc0000352.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375440
rosa_rugosa	Rorug04G0272800
rosa_samantha	Rh4AG328500 Rh4BG335800 Rh4CG351300 Rh4DG332200
rosa_wichuraiana	Rw4G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	486, 761
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccII	CGCG	1 cut(s)	716
AciI	CCGC	4 cut(s)	20, 408, 557, 1078
AclWI	GGATC	4 cut(s)	216, 567, 843, 1254
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	3 cut(s)	64, 775, 1115
AcuI	CTGAAG	1 cut(s)	1217
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	328, 656, 1019, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	385, 399
AgsI	TTSAA	9 cut(s)	351, 597, 712, 725, 751, 871, 1088, 1115, 1151
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	5 cut(s)	115, 322, 524, 565, 607
AluI	AGCT	5 cut(s)	115, 322, 524, 565, 607
AlwI	GGATC	4 cut(s)	216, 567, 843, 1254
AlwNI	CAGNNNCTG	2 cut(s)	385, 1201
AoxI	GGCC	3 cut(s)	77, 271, 1198
ApoI	RAATTY	3 cut(s)	64, 775, 1115
Asp700I	GAANNNNTTC	1 cut(s)	1092
AspS9I	GGNCC	3 cut(s)	45, 176, 1198
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	45, 176
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	639
BccI	CCATC	1 cut(s)	901
BciT130I	CCWGG	1 cut(s)	49
BclI	TGATCA	1 cut(s)	258
BfaI	CTAG	2 cut(s)	315, 860
BfmI	CTRYAG	3 cut(s)	106, 503, 690
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	2 cut(s)	45, 176
BmgT120I	GGNCC	3 cut(s)	45, 176, 1198
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	5 cut(s)	343, 368, 487, 544, 907
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	971, 1003
BpuEI	CTTGAG	3 cut(s)	101, 504, 664
BsaBI	GATNNNNATC	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 399
Bse1I	ACTGG	2 cut(s)	379, 555
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	448, 559, 898
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	385, 399
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	379, 555
BsgI	GTGCAG	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	716
BshFI	GGCC	3 cut(s)	79, 273, 1200
BsiSI	CCGG	2 cut(s)	17, 76
BslI	CCNNNNNNNGG	2 cut(s)	385, 399
BsmI	GAATGC	2 cut(s)	410, 855
BsnI	GGCC	3 cut(s)	79, 273, 1200
Bsp143I	GATC	5 cut(s)	208, 258, 559, 835, 1246
BspACI	CCGC	4 cut(s)	20, 408, 557, 1078
BspANI	GGCC	3 cut(s)	79, 273, 1200
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	716
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	4 cut(s)	216, 567, 843, 1254
BsrI	ACTGG	2 cut(s)	379, 555
BssMI	GATC	5 cut(s)	208, 258, 559, 835, 1246
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	4 cut(s)	256, 507, 790, 1157
Bst6I	CTCTTC	1 cut(s)	956
BstC8I	GCNNGC	3 cut(s)	113, 1076, 1080
BstDEI	CTNAG	2 cut(s)	41, 627
BstF5I	GGATG	3 cut(s)	448, 559, 898
BstFNI	CGCG	1 cut(s)	716
BstKTI	GATC	5 cut(s)	211, 261, 562, 838, 1249
BstMBI	GATC	5 cut(s)	208, 258, 559, 835, 1246
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	3 cut(s)	106, 503, 690
BstUI	CGCG	1 cut(s)	716
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	2 cut(s)	208, 835
BstYI	RGATCY	2 cut(s)	208, 835
BsuRI	GGCC	3 cut(s)	79, 273, 1200
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	448, 559, 898
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	4 cut(s)	261, 516, 786, 999
Cac8I	GCNNGC	3 cut(s)	113, 1076, 1080
CaiI	CAGNNNCTG	2 cut(s)	385, 1201
Cfr13I	GGNCC	3 cut(s)	45, 176, 1198
Csp6I	GTAC	4 cut(s)	327, 655, 1018, 1028
CviAII	CATG	4 cut(s)	394, 958, 1031, 1218
CviQI	GTAC	4 cut(s)	327, 655, 1018, 1028
DdeI	CTNAG	2 cut(s)	41, 627
DpnI	GATC	5 cut(s)	210, 260, 561, 837, 1248
DpnII	GATC	5 cut(s)	208, 258, 559, 835, 1246
DraIII	CACNNNGTG	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
EciI	GGCGGA	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	45, 176
Eco57I	CTGAAG	1 cut(s)	1217
EcoO109I	RGGNCCY	2 cut(s)	176, 1198
EcoRII	CCWGG	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	809
EcoT22I	ATGCAT	1 cut(s)	959
FaeI	CATG	4 cut(s)	397, 961, 1034, 1221
FatI	CATG	4 cut(s)	393, 957, 1030, 1217
FauI	CCCGC	2 cut(s)	401, 1071
FbaI	TGATCA	1 cut(s)	258
FokI	GGATG	3 cut(s)	455, 566, 885
FspBI	CTAG	2 cut(s)	315, 860
HaeIII	GGCC	3 cut(s)	79, 273, 1200
HapII	CCGG	2 cut(s)	17, 76
Hin1II	CATG	4 cut(s)	397, 961, 1034, 1221
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	7 cut(s)	89, 98, 245, 677, 782, 911, 1034
HpaII	CCGG	2 cut(s)	17, 76
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	1106
Hpy188I	TCNGA	4 cut(s)	42, 97, 1051, 1236
Hpy188III	TCNNGA	6 cut(s)	242, 315, 588, 846, 1042, 1250
Hpy8I	GTNNAC	1 cut(s)	1106
HpyAV	CCTTC	2 cut(s)	695, 1103
HpyCH4III	ACNGT	4 cut(s)	256, 507, 790, 1157
HpyCH4IV	ACGT	1 cut(s)	1102
HpyCH4V	TGCA	8 cut(s)	153, 280, 299, 841, 878, 957, 1061, 1099
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	41, 627
HpySE526I	ACGT	1 cut(s)	1102
Hsp92II	CATG	4 cut(s)	397, 961, 1034, 1221
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	5 cut(s)	208, 258, 559, 835, 1246
LmnI	GCTCC	1 cut(s)	331
LweI	GCATC	5 cut(s)	343, 368, 487, 544, 907
MaeI	CTAG	2 cut(s)	315, 860
MaeII	ACGT	1 cut(s)	1102
MaeIII	GTNAC	5 cut(s)	56, 139, 228, 396, 511
MalI	GATC	5 cut(s)	210, 260, 561, 837, 1248
MboI	GATC	5 cut(s)	208, 258, 559, 835, 1246
MboII	GAAGA	6 cut(s)	29, 84, 608, 644, 973, 1223
MflI	RGATCY	2 cut(s)	208, 835
MluCI	AATT	8 cut(s)	33, 64, 162, 292, 487, 775, 994, 1115
MlyI	GAGTC	2 cut(s)	92, 671
MmeI	TCCRAC	4 cut(s)	120, 126, 630, 948
MnlI	CCTC	7 cut(s)	36, 139, 189, 630, 634, 957, 1124
Mph1103I	ATGCAT	1 cut(s)	959
MroXI	GAANNNNTTC	1 cut(s)	1092
MseI	TTAA	2 cut(s)	302, 975
MslI	CAYNNNNRTG	2 cut(s)	285, 434
MspI	CCGG	2 cut(s)	17, 76
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	2 cut(s)	410, 855
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	5 cut(s)	208, 258, 559, 835, 1246
NlaIII	CATG	4 cut(s)	397, 961, 1034, 1221
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	56, 511
NsiI	ATGCAT	1 cut(s)	959
PctI	GAATGC	2 cut(s)	410, 855
PdmI	GAANNNNTTC	1 cut(s)	1092
PfeI	GAWTC	5 cut(s)	89, 245, 782, 911, 1034
PflMI	CCANNNNNTGG	1 cut(s)	385
PleI	GAGTC	2 cut(s)	92, 671
PpsI	GAGTC	2 cut(s)	92, 671
PpuMI	RGGWCCY	1 cut(s)	176
PsiI	TTATAA	2 cut(s)	486, 761
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	3 cut(s)	45, 176, 1198
PspPPI	RGGWCCY	1 cut(s)	176
PstNI	CAGNNNCTG	2 cut(s)	385, 1201
PsuI	RGATCY	2 cut(s)	208, 835
RsaI	GTAC	4 cut(s)	328, 656, 1019, 1029
RsaNI	GTAC	4 cut(s)	327, 655, 1018, 1028
RseI	CAYNNNNRTG	2 cut(s)	285, 434
SaqAI	TTAA	2 cut(s)	302, 975
Sau3AI	GATC	5 cut(s)	208, 258, 559, 835, 1246
Sau96I	GGNCC	3 cut(s)	45, 176, 1198
SchI	GAGTC	2 cut(s)	92, 671
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	9 cut(s)	117, 266, 324, 526, 567, 609, 968, 1095, 1105
SfaNI	GCATC	5 cut(s)	343, 368, 487, 544, 907
SfcI	CTRYAG	3 cut(s)	106, 503, 690
SinI	GGWCC	2 cut(s)	45, 176
SmiMI	CAYNNNNRTG	2 cut(s)	285, 434
SmlI	CTYRAG	3 cut(s)	116, 519, 679
SmoI	CTYRAG	3 cut(s)	116, 519, 679
Sse9I	AATT	8 cut(s)	33, 64, 162, 292, 487, 775, 994, 1115
SsiI	CCGC	4 cut(s)	20, 408, 557, 1078
SspI	AATATT	1 cut(s)	933
SspMI	CTAG	2 cut(s)	315, 860
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	256, 507, 790, 1157
TaiI	ACGT	1 cut(s)	1105
TaqI	TCGA	3 cut(s)	131, 248, 589
TasI	AATT	8 cut(s)	33, 64, 162, 292, 487, 775, 994, 1115
TatI	WGTACW	2 cut(s)	654, 1017
TfiI	GAWTC	5 cut(s)	89, 245, 782, 911, 1034
Tru1I	TTAA	2 cut(s)	302, 975
Tru9I	TTAA	2 cut(s)	302, 975
TscAI	CASTG	4 cut(s)	261, 516, 793, 1006
TseFI	GTSAC	2 cut(s)	56, 511
Tsp45I	GTSAC	2 cut(s)	56, 511
TspDTI	ATGAA	5 cut(s)	58, 384, 974, 1025, 1206
TspGWI	ACGGA	3 cut(s)	158, 344, 806
TspRI	CASTG	4 cut(s)	261, 516, 793, 1006
Van91I	CCANNNNNTGG	1 cut(s)	385
VpaK11BI	GGWCC	2 cut(s)	45, 176
XapI	RAATTY	3 cut(s)	64, 775, 1115
XbaI	TCTAGA	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	1092
XspI	CTAG	2 cut(s)	315, 860
Zsp2I	ATGCAT	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.