AT2G01400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011996
Physical Location & Seq
Forward (+)
174168 .. 175617
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01400.1

Sequence Viewer

Length: 441 bp
ATGGCGAGATCGTGCTCTATCTGGACACCTGTTTTGATCTCACTTTCACCAGTGACCGGAGAATCACCTAAAATTTCACGGCGCCGGGTGATTTTAGCCACAAGTATAGGATCTCCTCAGCCTTTACTTGAAGCAAAGATCAAGGAACCTCAGAAGCTTCAAGTCCTTGATTCCAAAGATGTTTCCAGAAGAAACACTATGCTGTATCTAGCTGCTGGATTTCTTGGAGGGATCAACTTTCTCAATGGTGAAGCCGCAGAAGCTCGAGTAGGGAGAAAGGAGAACAGAAAGAAAGCATTGGAGAAGCTGAGGGCCAAAGCTAAAGAGTCAGAGCCCAACAACAAGTCAGGTAACCAAAAGATAGAGAAAGAGTTAGAGAAAGAAGAAGTGTTTCCTCTACTTCCTCCACCTCTTGTCGTTGAAGCAAACTTGCTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.15

Weight (kDa)

9.79

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01400 AT2G01400
fragaria_vesca FvH4_4g32380
malus_domestica MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica Prupe.1G324100_v2.0.a1
pyrus_communis pycom13g02440 pycom16g02450
rosa_chinensis RchiOBHm_Chr4g0441211
rosa_laevigata RLG00000006111
rosa_multiflora Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii Rroxscaffold_5G00382120
rosa_rugosa Rorug04G0331500
rosa_samantha Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana Rw4G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 118, 239
AcsI RAATTY 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 131, 161, 422
AluBI AGCT 5 cut(s) 157, 212, 263, 307, 320
AluI AGCT 5 cut(s) 157, 212, 263, 307, 320
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 2 cut(s) 118, 239
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 72
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 4 cut(s) 39, 57, 100, 260
AvaI CYCGRG 1 cut(s) 264
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 2 cut(s) 117, 308
BbvI GCAGC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 2 cut(s) 213, 255
BlsI GCNGC 2 cut(s) 214, 256
Bme1390I CCNGG 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 83, 147
BmrFI CCNGG 1 cut(s) 86
Bpu10I CCTNAGC 2 cut(s) 117, 308
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 3 cut(s) 131, 164, 299
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 2 cut(s) 57, 85
BslI CCNNNNNNNGG 1 cut(s) 56
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 17, 336
Bsp143I GATC 5 cut(s) 8, 36, 110, 138, 231
BspACI CCGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 3 cut(s) 130, 163, 300
BspLI GGNNCC 2 cut(s) 83, 147
BspPI GGATC 2 cut(s) 118, 239
BspT107I GGYRCC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 50
BssMI GATC 5 cut(s) 8, 36, 110, 138, 231
BssNI GRCGYC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 117, 150, 308
BstEII GGTNACC 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 5 cut(s) 11, 39, 113, 141, 234
BstMBI GATC 5 cut(s) 8, 36, 110, 138, 231
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 314
BtsIMutI CAGTG 1 cut(s) 57
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 117, 150, 308
DinI GGCGCC 1 cut(s) 83
DpnI GATC 5 cut(s) 10, 38, 112, 140, 233
DpnII GATC 5 cut(s) 8, 36, 110, 138, 231
Eco24I GRGCYC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 336
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
FaiI YATR 2 cut(s) 107, 200
Fnu4HI GCNGC 2 cut(s) 213, 255
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 213, 255
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 213, 255
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 57, 85
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 3 cut(s) 62, 170, 326
HpaII CCGG 2 cut(s) 57, 85
HphI GGTGA 4 cut(s) 39, 57, 100, 260
Hpy188I TCNGA 2 cut(s) 153, 331
Hpy188III TCNNGA 2 cut(s) 22, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 3 cut(s) 117, 150, 308
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
Kzo9I GATC 5 cut(s) 8, 36, 110, 138, 231
LpnPI CCDG 8 cut(s) 7, 42, 63, 70, 98, 199, 201, 333
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 52, 350
MalI GATC 5 cut(s) 10, 38, 112, 140, 233
MboI GATC 5 cut(s) 8, 36, 110, 138, 231
MboII GAAGA 2 cut(s) 201, 395
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 2 cut(s) 17, 336
MluCI AATT 1 cut(s) 72
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 7 cut(s) 126, 159, 221, 303, 405, 414, 420
MroXI GAANNNNTTC 1 cut(s) 390
MspI CCGG 2 cut(s) 57, 85
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 260
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 86
NdeII GATC 5 cut(s) 8, 36, 110, 138, 231
NlaIV GGNNCC 2 cut(s) 83, 147
NmuCI GTSAC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 62, 170
PkrI GCNGC 2 cut(s) 214, 256
PleI GAGTC 1 cut(s) 334
PluTI GGCGCC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 334
PspEI GGTNACC 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 83, 147
PspPI GGNCC 1 cut(s) 312
PspXI VCTCGAGB 1 cut(s) 264
PsuI RGATCY 1 cut(s) 110
SatI GCNGC 2 cut(s) 213, 255
Sau3AI GATC 5 cut(s) 8, 36, 110, 138, 231
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 17, 336
SfoI GGCGCC 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 255
SspDI GGCGCC 1 cut(s) 81
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 1 cut(s) 265
TasI AATT 1 cut(s) 72
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 62, 170
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 1 cut(s) 57
XapI RAATTY 1 cut(s) 72
XhoI CTCGAG 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.