FvH4_4g32380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011996
Physical Location & Seq
Forward (+)
31056784 .. 31058404
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32380.t1

Sequence Viewer

Length: 426 bp
ATGTCGTTATCTAGTCTCATCGGCGGTGCACTTCCTCCTTCAGTCGGAGAAAACCAGCTGCCCACAAAACCGTCGTCGCTGACAACCACAAAACGAGCTCTTCCTCTTCAGGTGAGAAGTGAGGGAAGACCGGAATCATGCCCTCCAAAAGTACTTGGTGTTTCACGAAGAGATGTGATGCTACCCGCTGCAACACTAGCAGCAGTCACTTTTTTCTCAGTCGAACCTGCTGCTGAGGCACGAATCGTCAAGCCTGAGATTAGGAGGAAAATTCAGGAAAAGCTCAAGTTGCTGAGGGAAAAGGCCGGCTTATCAGAGCCAAAAACCAATCAAGGGAAACAGCCAGAACTGTCTTCACCACCGGCACCTGTTCCAAGTCCTCAAGTAAGCCCAATTATACCACCTGTGGAAGCAATATTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.03

Weight (kDa)

10.0

Isoelectric Point (pI)

84.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01400 AT2G01400
fragaria_vesca FvH4_4g32380
malus_domestica MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica Prupe.1G324100_v2.0.a1
pyrus_communis pycom13g02440 pycom16g02450
rosa_chinensis RchiOBHm_Chr4g0441211
rosa_laevigata RLG00000006111
rosa_multiflora Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii Rroxscaffold_5G00382120
rosa_rugosa Rorug04G0331500
rosa_samantha Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana Rw4G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 364
AciI CCGC 2 cut(s) 24, 186
AcsI RAATTY 1 cut(s) 270
AcuI CTGAAG 2 cut(s) 24, 92
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 44, 333
AluBI AGCT 3 cut(s) 58, 98, 283
AluI AGCT 3 cut(s) 58, 98, 283
Alw21I GWGCWC 2 cut(s) 31, 100
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 27
AoxI GGCC 1 cut(s) 303
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 4 cut(s) 58, 188, 200, 230
ApoI RAATTY 1 cut(s) 270
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AsuHPI GGTGA 2 cut(s) 124, 348
BaeGI GKGCMC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 2 cut(s) 133, 345
Bbv12I GWGCWC 2 cut(s) 31, 100
BbvCI CCTCAGC 2 cut(s) 234, 293
BbvI GCAGC 4 cut(s) 45, 175, 212, 217
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 12, 197
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 4 cut(s) 59, 189, 201, 231
BlsI GCNGC 4 cut(s) 60, 190, 202, 232
BmcAI AGTACT 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 366
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 2 cut(s) 133, 345
Bpu10I CCTNAGC 2 cut(s) 234, 293
BpuEI CTTGAG 2 cut(s) 269, 366
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 333
Bse118I RCCGGY 2 cut(s) 305, 361
BseLI CCNNNNNNNGG 2 cut(s) 44, 333
BseMII CTCAG 4 cut(s) 225, 231, 246, 284
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 4 cut(s) 45, 175, 212, 217
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 31, 100
BsiSI CCGG 3 cut(s) 131, 306, 362
BslI CCNNNNNNNGG 2 cut(s) 44, 333
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 31, 100
BspACI CCGC 2 cut(s) 24, 186
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 4 cut(s) 226, 230, 247, 285
BspLI GGNNCC 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 364
BsrFI RCCGGY 2 cut(s) 305, 361
BssAI RCCGGY 2 cut(s) 305, 361
Bst4CI ACNGT 2 cut(s) 72, 351
Bst6I CTCTTC 3 cut(s) 105, 111, 163
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 4 cut(s) 217, 234, 255, 293
BstMAI GTCTC 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 197, 236, 289
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 4 cut(s) 45, 175, 212, 217
BstV2I GAAGAC 2 cut(s) 133, 345
BsuRI GGCC 1 cut(s) 305
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 307
Cfr10I RCCGGY 2 cut(s) 305, 361
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 138
CviJI RGCY 9 cut(s) 58, 98, 253, 283, 305, 309, 319, 343, 390
CviKI_1 RGCY 9 cut(s) 58, 98, 253, 283, 305, 309, 319, 343, 390
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 4 cut(s) 217, 234, 255, 293
Eam1104I CTCTTC 3 cut(s) 105, 111, 163
EarI CTCTTC 3 cut(s) 105, 111, 163
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 24, 92
EcoICRI GAGCTC 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 100
FaeI CATG 1 cut(s) 141
FaiI YATR 2 cut(s) 139, 398
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 1 cut(s) 137
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 59, 189, 201, 231
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 4 cut(s) 59, 189, 201, 231
FspBI CTAG 2 cut(s) 12, 197
GluI GCNGC 4 cut(s) 59, 189, 201, 231
HaeIII GGCC 1 cut(s) 305
HapII CCGG 3 cut(s) 131, 306, 362
Hin1II CATG 1 cut(s) 141
HinfI GANTC 2 cut(s) 134, 243
HpaII CCGG 3 cut(s) 131, 306, 362
HphI GGTGA 2 cut(s) 124, 348
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 47, 316
Hpy188III TCNNGA 2 cut(s) 165, 275
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 2 cut(s) 76, 79
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 72, 351
HpyCH4V TGCA 2 cut(s) 29, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 236, 289
HpyF3I CTNAG 4 cut(s) 217, 234, 255, 293
Hsp92II CATG 1 cut(s) 141
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 105
Lsp1109I GCAGC 4 cut(s) 45, 175, 212, 217
LweI GCATC 1 cut(s) 168
MaeI CTAG 2 cut(s) 12, 197
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 5 cut(s) 92, 98, 138, 180, 345
MhlI GDGCHC 2 cut(s) 31, 100
MluCI AATT 2 cut(s) 270, 393
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 8 cut(s) 45, 114, 115, 153, 229, 258, 288, 390
MroNI GCCGGC 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 58, 188
MspI CCGG 3 cut(s) 131, 306, 362
MwoI GCNNNNNNNGC 3 cut(s) 197, 236, 289
NaeI GCCGGC 1 cut(s) 307
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 134, 243
PkrI GCNGC 4 cut(s) 60, 190, 202, 232
Psp124BI GAGCTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 366
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 4 cut(s) 59, 189, 201, 231
ScaI AGTACT 1 cut(s) 153
SduI GDGCHC 2 cut(s) 31, 100
SetI ASST 7 cut(s) 60, 100, 114, 229, 285, 370, 406
SfaNI GCATC 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 284, 381
SmoI CTYRAG 2 cut(s) 284, 381
Sse9I AATT 2 cut(s) 270, 393
SsiI CCGC 2 cut(s) 24, 186
SspI AATATT 1 cut(s) 417
SspMI CTAG 2 cut(s) 12, 197
SstI GAGCTC 1 cut(s) 100
TaaI ACNGT 2 cut(s) 72, 351
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 270, 393
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 2 cut(s) 134, 243
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 58, 188, 200, 230
Tsp45I GTSAC 1 cut(s) 205
VneI GTGCAC 1 cut(s) 27
XapI RAATTY 1 cut(s) 270
XspI CTAG 2 cut(s) 12, 197
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.