Prupe.1G324100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011996
Physical Location & Seq
Forward (+)
30938641 .. 30948444
9804 bp
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UTR
Exon/CDS
Intron
Prupe.1G324100.1

Sequence Viewer

Length: 471 bp
ATGGCATTCTCAAGTTGCAAGCTGGTGGGCGGCGGTTCGCTTCCTTCGGCAGTCGGAGAGAACCAGTTCCCCTGGAAGCGCTCGGTGACGACAACCCCGAAGAGAGCTCTTCCTCTTCAGGTGAGAAGTGAGGGAAAACGCAAAATAGAAGCTCCAAAAGCCTTTGGCGTTTCACGAAGAGATTTGATGTTATGTTTGCCTGCTGGGACACTGGCAGCAGCCACTCTTTTTCCTATAAAACCTGCGGAAGCGCGCATTGTCAAGCCCGAGATCAGGAGGAAAATTCAAGAGAAGTTTGAGAAGATCAGGGAACAGTTTGGGTTGTCAAAGCCAAAGACCAATGATGGGAAAGAGCCATACCCATCACCACCATCGTCGGAGGAGAAAAAGCCTCAAACTTTGCCCCCTGCACCACCTCAAAATGCTCAAGGAAGCCTGCTTGTACCACCAGTGGAAGCAATTCTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.97

Weight (kDa)

10.06

Isoelectric Point (pI)

75.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01400 AT2G01400
fragaria_vesca FvH4_4g32380
malus_domestica MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica Prupe.1G324100_v2.0.a1
pyrus_communis pycom13g02440 pycom16g02450
rosa_chinensis RchiOBHm_Chr4g0441211
rosa_laevigata RLG00000006111
rosa_multiflora Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii Rroxscaffold_5G00382120
rosa_rugosa Rorug04G0331500
rosa_samantha Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana Rw4G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccII CGCG 1 cut(s) 253
AciI CCGC 3 cut(s) 30, 33, 245
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 444
AfeI AGCGCT 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 273, 345
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 3 cut(s) 22, 107, 152
AluI AGCT 3 cut(s) 22, 107, 152
Alw21I GWGCWC 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 266
Aor51HI AGCGCT 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 215, 218
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 2 cut(s) 65, 459
AspLEI GCGC 3 cut(s) 81, 253, 255
AsuHPI GGTGA 3 cut(s) 97, 133, 357
AvaI CYCGRG 1 cut(s) 266
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 227, 230
BccI CCATC 3 cut(s) 338, 370, 379
BciT130I CCWGG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 3 cut(s) 31, 216, 219
BlsI GCNGC 3 cut(s) 32, 217, 220
Bme1390I CCNGG 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 345
Bse1I ACTGG 3 cut(s) 64, 216, 449
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 273, 345
BseNI ACTGG 3 cut(s) 64, 216, 449
BsePI GCGCGC 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 227, 230
BseYI CCCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 273, 345
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 270, 303
BspACI CCGC 3 cut(s) 30, 33, 245
BspFNI CGCG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 114
BsrI ACTGG 3 cut(s) 64, 216, 449
BssECI CCNNGG 1 cut(s) 71
BssHII GCGCGC 1 cut(s) 251
BssMI GATC 2 cut(s) 270, 303
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 4 cut(s) 95, 114, 120, 172
BstC8I GCNNGC 4 cut(s) 20, 201, 253, 437
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 81, 253, 255
BstKTI GATC 2 cut(s) 273, 306
BstMBI GATC 2 cut(s) 270, 303
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 227, 230
BtsIMutI CAGTG 2 cut(s) 209, 456
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 4 cut(s) 20, 201, 253, 437
CfoI GCGC 3 cut(s) 81, 253, 255
Csp6I GTAC 1 cut(s) 443
CviQI GTAC 1 cut(s) 443
DpnI GATC 2 cut(s) 272, 305
DpnII GATC 2 cut(s) 270, 303
Eam1104I CTCTTC 4 cut(s) 95, 114, 120, 172
EarI CTCTTC 4 cut(s) 95, 114, 120, 172
Ecl136II GAGCTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 109
FaiI YATR 3 cut(s) 193, 236, 358
FaqI GGGAC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 31, 216, 219
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 31, 216, 219
GlaI GCGC 3 cut(s) 80, 252, 254
GluI GCNGC 3 cut(s) 31, 216, 219
GsaI CCCAGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 82
HhaI GCGC 3 cut(s) 81, 253, 255
Hin6I GCGC 3 cut(s) 79, 251, 253
HinP1I GCGC 3 cut(s) 79, 251, 253
HphI GGTGA 3 cut(s) 97, 133, 357
Hpy188I TCNGA 2 cut(s) 56, 379
Hpy188III TCNNGA 3 cut(s) 174, 274, 287
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4V TGCA 2 cut(s) 18, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HspAI GCGC 3 cut(s) 79, 251, 253
Kzo9I GATC 2 cut(s) 270, 303
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 227, 230
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 272, 305
MboI GATC 2 cut(s) 270, 303
MboII GAAGA 5 cut(s) 101, 107, 112, 189, 313
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 2 cut(s) 282, 459
MmeI TCCRAC 2 cut(s) 34, 357
MnlI CCTC 6 cut(s) 123, 124, 270, 373, 402, 426
MroXI GAANNNNTTC 2 cut(s) 65, 459
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 73
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 270, 303
NmuCI GTSAC 1 cut(s) 85
PauI GCGCGC 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 2 cut(s) 65, 459
PkrI GCNGC 3 cut(s) 32, 217, 220
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 71
PteI GCGCGC 1 cut(s) 251
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SacI GAGCTC 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 3 cut(s) 31, 216, 219
Sau3AI GATC 2 cut(s) 270, 303
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 109
SetI ASST 6 cut(s) 24, 109, 123, 154, 244, 418
SmlI CTYRAG 2 cut(s) 10, 426
SmoI CTYRAG 2 cut(s) 10, 426
Sse9I AATT 2 cut(s) 282, 459
SsiI CCGC 3 cut(s) 30, 33, 245
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 315
TasI AATT 2 cut(s) 282, 459
TauI GCSGC 1 cut(s) 33
TscAI CASTG 2 cut(s) 216, 456
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 215, 218
Tsp45I GTSAC 1 cut(s) 85
TspRI CASTG 2 cut(s) 216, 456
XapI RAATTY 1 cut(s) 282
XmnI GAANNNNTTC 2 cut(s) 65, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.