Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011996

Physical Location & Seq

Genomic Coordinates Forward (+)

61991185 .. 61993180

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCGTTATCTAGTTGGAAACTGGTTGGCGGTGCACTTCCTCCGTCGGTCGGAGAAAACCGGCTACCCACAAAGCCGTCGGCGCTGACAACCACAAAAAGAGCTCTTCCTCTTCAGAGATGTTATGCTGTCTTTACCCGCTGCGACACTAGCAGCAGCTACTTTTTCTCAGTCGAACCTGCTGAGGCACGAATTGTCAAGCCCGAGATTAGGAGGAAAATTCAGGAAAAGCTTGAGATGCTGAGGGAAAAGGCCGGCTTATCAAAGCCAAAAACCAATGAAGGGAAACAGCCAGCACCTCCTTCGCCACTAGTGCCTCTTCCAACTCCTGTGGAAGCCATTCTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.72

Weight (kDa)

9.88

Isoelectric Point (pI)

64.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01400 AT2G01400
fragaria_vesca	FvH4_4g32380
malus_domestica	MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica	Prupe.1G324100_v2.0.a1
pyrus_communis	pycom13g02440 pycom16g02450
rosa_chinensis	RchiOBHm_Chr4g0441211
rosa_laevigata	RLG00000006111
rosa_multiflora	Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii	Rroxscaffold_5G00382120
rosa_rugosa	Rorug04G0331500
rosa_samantha	Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana	Rw4G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AciI	CCGC	2 cut(s)	30, 139
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	50, 210, 282
AhlI	ACTAGT	1 cut(s)	310
AluBI	AGCT	3 cut(s)	104, 159, 232
AluI	AGCT	3 cut(s)	104, 159, 232
Alw21I	GWGCWC	2 cut(s)	37, 106
Alw44I	GTGCAC	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	252
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	141, 153, 156
ApoI	RAATTY	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	37, 106
BbvCI	CCTCAGC	2 cut(s)	183, 242
BbvI	GCAGC	3 cut(s)	128, 165, 168
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	3 cut(s)	12, 150, 311
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	3 cut(s)	142, 154, 157
BlsI	GCNGC	3 cut(s)	143, 155, 158
BmeT110I	CYCGRG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	228
Bpu10I	CCTNAGC	2 cut(s)	183, 242
BpuEI	CTTGAG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 210, 282
Bse118I	RCCGGY	2 cut(s)	60, 254
Bse1I	ACTGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	50, 210, 282
BseMII	CTCAG	3 cut(s)	174, 183, 233
BseNI	ACTGG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	128, 165, 168
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	37, 106
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	61, 255
BslI	CCNNNNNNNGG	3 cut(s)	50, 210, 282
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	37, 106
BspACI	CCGC	2 cut(s)	30, 139
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	3 cut(s)	175, 182, 234
BspMI	ACCTGC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	111
BsrFI	RCCGGY	2 cut(s)	60, 254
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	2 cut(s)	60, 254
Bst6I	CTCTTC	3 cut(s)	111, 117, 324
BstC8I	GCNNGC	2 cut(s)	256, 294
BstDEI	CTNAG	3 cut(s)	169, 183, 242
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 150, 238, 313
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	128, 165, 168
BsuRI	GGCC	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	256, 294
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	2 cut(s)	60, 254
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
DdeI	CTNAG	3 cut(s)	169, 183, 242
Eam1104I	CTCTTC	3 cut(s)	111, 117, 324
EarI	CTCTTC	3 cut(s)	111, 117, 324
Ecl136II	GAGCTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	106
FaiI	YATR	1 cut(s)	126
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	142, 154, 157
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	142, 154, 157
FspBI	CTAG	3 cut(s)	12, 150, 311
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	142, 154, 157
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	61, 255
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	2 cut(s)	61, 255
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	53, 117
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	2 cut(s)	49, 82
HpyAV	CCTTC	2 cut(s)	275, 312
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 150, 238, 313
HpyF3I	CTNAG	3 cut(s)	169, 183, 242
HspAI	GCGC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	8, 74, 192, 209, 268, 306, 342
Lsp1109I	GCAGC	3 cut(s)	128, 165, 168
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	3 cut(s)	12, 150, 311
MboII	GAAGA	3 cut(s)	98, 104, 311
MhlI	GDGCHC	2 cut(s)	37, 106
MluCI	AATT	2 cut(s)	192, 219
MmeI	TCCRAC	2 cut(s)	31, 347
MnlI	CCTC	7 cut(s)	51, 120, 178, 207, 237, 309, 327
MroNI	GCCGGC	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	2 cut(s)	61, 255
MwoI	GCNNNNNNNGC	4 cut(s)	82, 150, 238, 313
NaeI	GCCGGC	1 cut(s)	256
NgoMIV	GCCGGC	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	143, 155, 158
Psp124BI	GAGCTC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	3 cut(s)	142, 154, 157
SduI	GDGCHC	2 cut(s)	37, 106
SetI	ASST	5 cut(s)	106, 161, 181, 234, 301
SfaNI	GCATC	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	310
Sse9I	AATT	2 cut(s)	192, 219
SsiI	CCGC	2 cut(s)	30, 139
SspMI	CTAG	3 cut(s)	12, 150, 311
SstI	GAGCTC	1 cut(s)	106
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	192, 219
TseI	GCWGC	3 cut(s)	141, 153, 156
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	3 cut(s)	12, 150, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.