Rh4AG383300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011996
Physical Location & Seq
Forward (+)
69006465 .. 69008206
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG383300.1

Sequence Viewer

Length: 414 bp
ATGTCGTTATCTAGTTGGAAACTGGTTGGCGGTGCACTTCCTCCGTCGGTCGGAGAAAATCGGCTCCCCACAAAGCCGTCGGCGCTGACAACCACAAAAAGAGCTCTTCCTCTTCAGGTGGTGAGAAGTGAGGGAAAACACAACTCAGGCCCTCCAAAAGTACTTGGCGTTTCACGAAGAGATGTTATGCTGTCTTTACCCGCTGCGACACTAGCAGCAGCTACTTTTTTCTCAGTCGAACCTGCTGAGGCACGAATTGTCAAGCCCGAGATTAGGAGGAAAATTCAGGAAAAGCTTGAGATGCTGAGGGAAAAGGCGGGCTTATCAAAGCCAAAAACCAATGAAGGGAAACAGCCAGCACCATCTTCGCCACCAGTGCCTCTTCCAACTCCTGTGGAAGCCATTCTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.63

Weight (kDa)

10.43

Isoelectric Point (pI)

69.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01400 AT2G01400
fragaria_vesca FvH4_4g32380
malus_domestica MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica Prupe.1G324100_v2.0.a1
pyrus_communis pycom13g02440 pycom16g02450
rosa_chinensis RchiOBHm_Chr4g0441211
rosa_laevigata RLG00000006111
rosa_multiflora Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii Rroxscaffold_5G00382120
rosa_rugosa Rorug04G0331500
rosa_samantha Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana Rw4G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AciI CCGC 3 cut(s) 30, 201, 317
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 3 cut(s) 50, 273, 345
AluBI AGCT 3 cut(s) 104, 221, 295
AluI AGCT 3 cut(s) 104, 221, 295
Alw21I GWGCWC 2 cut(s) 37, 106
Alw44I GTGCAC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 203, 215, 218
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 2 cut(s) 37, 106
BbvCI CCTCAGC 2 cut(s) 246, 305
BbvI GCAGC 3 cut(s) 190, 227, 230
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BfaI CTAG 2 cut(s) 12, 212
BfoI RGCGCY 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 3 cut(s) 204, 216, 219
BlsI GCNGC 3 cut(s) 205, 217, 220
BmcAI AGTACT 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 65
BmsI GCATC 1 cut(s) 291
Bpu10I CCTNAGC 2 cut(s) 246, 305
BpuEI CTTGAG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 273, 345
Bse1I ACTGG 2 cut(s) 27, 374
BseLI CCNNNNNNNGG 3 cut(s) 50, 273, 345
BseMII CTCAG 4 cut(s) 159, 237, 246, 296
BseNI ACTGG 2 cut(s) 27, 374
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 190, 227, 230
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 2 cut(s) 37, 106
BsiHKCI CYCGRG 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 50, 273, 345
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 37, 106
BspACI CCGC 3 cut(s) 30, 201, 317
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 4 cut(s) 158, 238, 245, 297
BspLI GGNNCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 111
BsrI ACTGG 2 cut(s) 27, 374
Bst6I CTCTTC 4 cut(s) 111, 117, 172, 387
BstC8I GCNNGC 2 cut(s) 319, 357
BstDEI CTNAG 4 cut(s) 145, 232, 246, 305
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 82, 212, 301, 376
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 190, 227, 230
BsuRI GGCC 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 319, 357
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 161
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 4 cut(s) 145, 232, 246, 305
Eam1104I CTCTTC 4 cut(s) 111, 117, 172, 387
EarI CTCTTC 4 cut(s) 111, 117, 172, 387
Ecl136II GAGCTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 106
FaiI YATR 1 cut(s) 188
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FauI CCCGC 2 cut(s) 208, 310
Fnu4HI GCNGC 3 cut(s) 204, 216, 219
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 204, 216, 219
FspBI CTAG 2 cut(s) 12, 212
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 204, 216, 219
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 1 cut(s) 150
HhaI GCGC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 293
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 174, 287
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 2 cut(s) 49, 82
HpyAV CCTTC 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 212, 301, 376
HpyF3I CTNAG 4 cut(s) 145, 232, 246, 305
HspAI GCGC 1 cut(s) 83
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 8 cut(s) 8, 101, 132, 255, 272, 369, 387, 405
Lsp1109I GCAGC 3 cut(s) 190, 227, 230
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 12, 212
MboII GAAGA 5 cut(s) 98, 104, 189, 357, 374
MhlI GDGCHC 2 cut(s) 37, 106
MluCI AATT 2 cut(s) 255, 282
MmeI TCCRAC 2 cut(s) 31, 410
MnlI CCTC 8 cut(s) 51, 120, 124, 162, 241, 270, 300, 390
MroXI GAANNNNTTC 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 82, 212, 301, 376
NlaIV GGNNCC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 402
PkrI GCNGC 3 cut(s) 205, 217, 220
Psp124BI GAGCTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SacI GAGCTC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 3 cut(s) 204, 216, 219
Sau96I GGNCC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 162
SduI GDGCHC 2 cut(s) 37, 106
SetI ASST 5 cut(s) 106, 120, 223, 244, 297
SfaNI GCATC 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 255, 282
SsiI CCGC 3 cut(s) 30, 201, 317
SspMI CTAG 2 cut(s) 12, 212
SstI GAGCTC 1 cut(s) 106
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 37
TasI AATT 2 cut(s) 255, 282
TatI WGTACW 1 cut(s) 160
TscAI CASTG 1 cut(s) 381
TseI GCWGC 3 cut(s) 203, 215, 218
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 381
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 2 cut(s) 12, 212
ZrmI AGTACT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.