pycom13g02440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011996
Physical Location & Seq
Reverse (-)
1674150 .. 1676230
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02440.1

Sequence Viewer

Length: 513 bp
ATGGCATTCTCTAGTTGCAGCAATCTGGTGGGCGGTCCGCTTACTTTGGCGGCGGTCGGAGAAACCCAGTTGCCCACGAAGCGCTCGATGTCGGTGACAACCACCACCACCACAAAGCACAGAGCTCTTCCTCTTCAGGTGAGAAGTGAGGGAAAACAAAAAGCAGGCTCTCCAAAAACCTTCGGAGTTTCACGAAGAGATGTGATGTTATCTTTGCCAGTTGGGACATTGGCATCACTCACTCTTCTTCCAACAGAACCTGCCGAAGCACGCATTGTCAATCCCGAGATCAGGAAGAAGATTTTTGAAAAGTTGGAGAAGATAAGGGAACACTTTGGTTTGTCAAGGCCAAAAACCAATGACGGGAAAGAGGAATACCCATCACCACCACCACCACCACCACCACCATCATTGGAGGAGAAAAATCCTCAAACATTGCCACCAGCACTGCCCTTGGATCCTCAAGGGAACCTACTTGTACCTCTACCTCCTGTCGAAGTAATTCTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.35

Weight (kDa)

9.52

Isoelectric Point (pI)

71.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01400 AT2G01400
fragaria_vesca FvH4_4g32380
malus_domestica MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica Prupe.1G324100_v2.0.a1
pyrus_communis pycom13g02440 pycom16g02450
rosa_chinensis RchiOBHm_Chr4g0441211
rosa_laevigata RLG00000006111
rosa_multiflora Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii Rroxscaffold_5G00382120
rosa_rugosa Rorug04G0331500
rosa_samantha Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana Rw4G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AciI CCGC 4 cut(s) 33, 38, 50, 53
AclWI GGATC 2 cut(s) 452, 465
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 1 cut(s) 480
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 291, 363
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 2 cut(s) 452, 465
AlwNI CAGNNNCTG 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 284
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 3 cut(s) 106, 151, 375
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 388, 415
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 19, 51
BlsI GCNGC 2 cut(s) 20, 52
Bme18I GGWCC 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 459, 470
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 242
BmuI ACTGGG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 363
Bse1I ACTGG 2 cut(s) 67, 218
Bse3DI GCAATG 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 291, 363
BseMI GCAATG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 67, 218
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 291, 363
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 288, 457
BspACI CCGC 4 cut(s) 33, 38, 50, 53
BspANI GGCC 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 459, 470
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 2 cut(s) 452, 465
BspQI GCTCTTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 2 cut(s) 67, 218
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 2 cut(s) 288, 457
BssT1I CCWWGG 1 cut(s) 453
Bst6I CTCTTC 4 cut(s) 132, 138, 190, 249
BstC8I GCNNGC 2 cut(s) 166, 271
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 2 cut(s) 291, 460
BstMBI GATC 2 cut(s) 288, 457
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 446
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 166, 271
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 35
CpoI CGGWCCG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 479
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CspI CGGWCCG 1 cut(s) 35
CviJI RGCY 3 cut(s) 125, 168, 349
CviKI_1 RGCY 3 cut(s) 125, 168, 349
CviQI GTAC 1 cut(s) 479
DpnI GATC 2 cut(s) 290, 459
DpnII GATC 2 cut(s) 288, 457
Eam1104I CTCTTC 4 cut(s) 132, 138, 190, 249
EarI CTCTTC 4 cut(s) 132, 138, 190, 249
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 35
Eco47III AGCGCT 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 453
FaqI GGGAC 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 19, 51
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 19, 51
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 19, 51
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 349
HhaI GCGC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HphI GGTGA 3 cut(s) 106, 151, 375
Hpy188I TCNGA 2 cut(s) 59, 185
Hpy188III TCNNGA 3 cut(s) 192, 284, 292
HpyAV CCTTC 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 2 cut(s) 288, 457
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 9 cut(s) 11, 80, 122, 150, 231, 273, 277, 456, 504
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 242
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 94
MalI GATC 2 cut(s) 290, 459
MboI GATC 2 cut(s) 288, 457
MboII GAAGA 8 cut(s) 119, 125, 207, 236, 239, 307, 310, 331
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 1 cut(s) 501
MmeI TCCRAC 3 cut(s) 37, 275, 294
MnlI CCTC 8 cut(s) 141, 142, 364, 409, 438, 471, 492, 498
MroXI GAANNNNTTC 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 2 cut(s) 288, 457
NlaIV GGNNCC 2 cut(s) 459, 470
NmuCI GTSAC 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 501
PkrI GCNGC 2 cut(s) 20, 52
Psp124BI GAGCTC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 459, 470
PspPI GGNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
Rsr2I CGGWCCG 1 cut(s) 35
RsrII CGGWCCG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 132
SatI GCNGC 2 cut(s) 19, 51
Sau3AI GATC 2 cut(s) 288, 457
Sau96I GGNCC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 127
SetI ASST 7 cut(s) 127, 141, 182, 262, 474, 484, 490
SfaNI GCATC 1 cut(s) 242
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 462
SmoI CTYRAG 1 cut(s) 462
Sse9I AATT 1 cut(s) 501
SsiI CCGC 4 cut(s) 33, 38, 50, 53
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 127
StyI CCWWGG 1 cut(s) 453
TaqI TCGA 2 cut(s) 86, 495
TasI AATT 1 cut(s) 501
TauI GCSGC 1 cut(s) 53
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 94
TspRI CASTG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.