Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011996

Physical Location & Seq

Genomic Coordinates Reverse (-)

4422893 .. 4424713

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCGTTATCTAGTTGGAAATTGGTTGGCGGTGCACTTCCTCCGTCGGTCGGAGAAAACCGGCTACCCACAAAGCCGTCGGCGTTGACAACCACAAAAAGAGCTCTTCCTCTTCAGGTGAGAAGTGAGGGAAAACACAACTCAGGCCCTCCAAAAGTACTTAGCGTTTCACGAAGAGATGTTATGCTGTTTTTACCCCCTGCGACACTAGCAGCAGCTACTTTTTTCTCAGTCGAACCTGCTGAGGCACGAATTGTGAAGCCTGAGATTAGGAGGAAAATTCAGGAAAAGCTTGAGATGCTGAGGGAAAAGGCCGGCTTATCAAAGCCAAAAACCAAAGAAGGGAAACAGCCAGCACCATCTTCGCCACCAGTGCCTCTTCCAACTCCTGTGGAAGCCATTCTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.66

Weight (kDa)

10.48

Isoelectric Point (pI)

72.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01400 AT2G01400
fragaria_vesca	FvH4_4g32380
malus_domestica	MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica	Prupe.1G324100_v2.0.a1
pyrus_communis	pycom13g02440 pycom16g02450
rosa_chinensis	RchiOBHm_Chr4g0441211
rosa_laevigata	RLG00000006111
rosa_multiflora	Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii	Rroxscaffold_5G00382120
rosa_rugosa	Rorug04G0331500
rosa_samantha	Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana	Rw4G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AciI	CCGC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	50, 342
AluBI	AGCT	3 cut(s)	104, 218, 292
AluI	AGCT	3 cut(s)	104, 218, 292
Alw21I	GWGCWC	2 cut(s)	37, 106
Alw44I	GTGCAC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	145, 312
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	212, 215
ApoI	RAATTY	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	37, 106
BbvCI	CCTCAGC	2 cut(s)	243, 302
BbvI	GCAGC	2 cut(s)	224, 227
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BfaI	CTAG	2 cut(s)	12, 209
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	213, 216
BlsI	GCNGC	2 cut(s)	214, 217
BmcAI	AGTACT	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	146
BmsI	GCATC	1 cut(s)	288
Bpu10I	CCTNAGC	2 cut(s)	243, 302
BpuEI	CTTGAG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 342
Bse118I	RCCGGY	2 cut(s)	60, 314
Bse1I	ACTGG	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	50, 342
BseMII	CTCAG	5 cut(s)	156, 234, 243, 255, 293
BseNI	ACTGG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	224, 227
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	147, 314
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	37, 106
BsiSI	CCGG	2 cut(s)	61, 315
BslI	CCNNNNNNNGG	2 cut(s)	50, 342
BsnI	GGCC	2 cut(s)	147, 314
Bsp1286I	GDGCHC	2 cut(s)	37, 106
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	147, 314
BspCNI	CTCAG	5 cut(s)	155, 235, 242, 256, 294
BspMI	ACCTGC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	111
BsrFI	RCCGGY	2 cut(s)	60, 314
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	2 cut(s)	60, 314
Bst6I	CTCTTC	4 cut(s)	111, 117, 169, 384
BstC8I	GCNNGC	2 cut(s)	316, 354
BstDEI	CTNAG	6 cut(s)	142, 161, 229, 243, 264, 302
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 298, 373
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	224, 227
BsuRI	GGCC	2 cut(s)	147, 314
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	316, 354
Cfr10I	RCCGGY	2 cut(s)	60, 314
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	6 cut(s)	142, 161, 229, 243, 264, 302
Eam1104I	CTCTTC	4 cut(s)	111, 117, 169, 384
EarI	CTCTTC	4 cut(s)	111, 117, 169, 384
Ecl136II	GAGCTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	106
FaiI	YATR	1 cut(s)	185
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
Fnu4HI	GCNGC	2 cut(s)	213, 216
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	213, 216
FspBI	CTAG	2 cut(s)	12, 209
GluI	GCNGC	2 cut(s)	213, 216
HaeIII	GGCC	2 cut(s)	147, 314
HapII	CCGG	2 cut(s)	61, 315
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	290
HpaII	CCGG	2 cut(s)	61, 315
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	35, 87
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	171, 284
Hpy8I	GTNNAC	2 cut(s)	35, 87
Hpy99I	CGWCG	2 cut(s)	49, 82
HpyAV	CCTTC	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 298, 373
HpyF3I	CTNAG	6 cut(s)	142, 161, 229, 243, 264, 302
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	111
Lsp1109I	GCAGC	2 cut(s)	224, 227
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	12, 209
MboII	GAAGA	5 cut(s)	98, 104, 186, 354, 371
MhlI	GDGCHC	2 cut(s)	37, 106
MluCI	AATT	3 cut(s)	20, 252, 279
MmeI	TCCRAC	2 cut(s)	31, 407
MnlI	CCTC	8 cut(s)	51, 120, 121, 159, 238, 267, 297, 387
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	399
MspI	CCGG	2 cut(s)	61, 315
MwoI	GCNNNNNNNGC	3 cut(s)	209, 298, 373
NaeI	GCCGGC	1 cut(s)	316
NgoMIV	GCCGGC	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	214, 217
Psp124BI	GAGCTC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	2 cut(s)	213, 216
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	37, 106
SetI	ASST	5 cut(s)	106, 120, 220, 241, 294
SfaNI	GCATC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	20, 252, 279
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	2 cut(s)	12, 209
SstI	GAGCTC	1 cut(s)	106
TaqI	TCGA	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	20, 252, 279
TatI	WGTACW	1 cut(s)	157
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	2 cut(s)	212, 215
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	378
VneI	GTGCAC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	12, 209
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.