Rh4BG397400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011996
Physical Location & Seq
Forward (+)
54866661 .. 54868383
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG397400.1

Sequence Viewer

Length: 411 bp
ATGTCGTTATCTAGTTGGAAACTGGTTGGCGGTGCACTTCCTCCGTCGGTCGGAGAAAACCGGCTACCCACAAAGCCGTCGGCGCTGACAACCACAAAAGGAGCTCTTCCTCTTCAGGTGAGAAGTGAGGGAAAACACAACTCAGGCCCTCCAAAAGTACTTGGCGTTTCACGAAGAGATGTTATGCTGTCTTTACCCGCTGCGACACTAGCAGCAGCTACTTTTTTCTCAGTCGAACCTGCTGAGGCACGAATCGTCAAGCCCGAGATTAGGAGGAAAATTCAGGAAAAGCTTGAGATGCTGAGGGAAAAGGCCGGCTTATCAAAGCCAAAAACCAATGAAGGGAAACAGCCAGCACCATCTTTGCCACCAGTGCCTCTTCCAACTCCTGTGGAAGCCATTCTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.45

Weight (kDa)

10.28

Isoelectric Point (pI)

63.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01400 AT2G01400
fragaria_vesca FvH4_4g32380
malus_domestica MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica Prupe.1G324100_v2.0.a1
pyrus_communis pycom13g02440 pycom16g02450
rosa_chinensis RchiOBHm_Chr4g0441211
rosa_laevigata RLG00000006111
rosa_multiflora Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii Rroxscaffold_5G00382120
rosa_rugosa Rorug04G0331500
rosa_samantha Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana Rw4G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AciI CCGC 2 cut(s) 30, 198
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 3 cut(s) 50, 270, 342
AluBI AGCT 3 cut(s) 104, 218, 292
AluI AGCT 3 cut(s) 104, 218, 292
Alw21I GWGCWC 2 cut(s) 37, 106
Alw44I GTGCAC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 145, 312
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 200, 212, 215
ApoI RAATTY 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 2 cut(s) 37, 106
BbvCI CCTCAGC 2 cut(s) 243, 302
BbvI GCAGC 3 cut(s) 187, 224, 227
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 61
BfaI CTAG 2 cut(s) 12, 209
BfoI RGCGCY 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 3 cut(s) 201, 213, 216
BlsI GCNGC 3 cut(s) 202, 214, 217
BmcAI AGTACT 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 288
Bpu10I CCTNAGC 2 cut(s) 243, 302
BpuEI CTTGAG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 270, 342
Bse118I RCCGGY 2 cut(s) 60, 314
Bse1I ACTGG 2 cut(s) 27, 371
BseLI CCNNNNNNNGG 3 cut(s) 50, 270, 342
BseMII CTCAG 4 cut(s) 156, 234, 243, 293
BseNI ACTGG 2 cut(s) 27, 371
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 187, 224, 227
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 147, 314
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 2 cut(s) 37, 106
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 61, 315
BslI CCNNNNNNNGG 3 cut(s) 50, 270, 342
BsnI GGCC 2 cut(s) 147, 314
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 37, 106
BspACI CCGC 2 cut(s) 30, 198
BspANI GGCC 2 cut(s) 147, 314
BspCNI CTCAG 4 cut(s) 155, 235, 242, 294
BspMI ACCTGC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 60, 314
BsrI ACTGG 2 cut(s) 27, 371
BssAI RCCGGY 2 cut(s) 60, 314
Bst6I CTCTTC 4 cut(s) 111, 117, 169, 384
BstC8I GCNNGC 2 cut(s) 316, 354
BstDEI CTNAG 4 cut(s) 142, 229, 243, 302
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 82, 209, 298, 373
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 187, 224, 227
BsuRI GGCC 2 cut(s) 147, 314
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 316, 354
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 2 cut(s) 60, 314
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 4 cut(s) 142, 229, 243, 302
Eam1104I CTCTTC 4 cut(s) 111, 117, 169, 384
EarI CTCTTC 4 cut(s) 111, 117, 169, 384
Ecl136II GAGCTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 106
FaiI YATR 1 cut(s) 185
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 302, 334
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 201, 213, 216
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 201, 213, 216
FspBI CTAG 2 cut(s) 12, 209
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 201, 213, 216
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 2 cut(s) 147, 314
HapII CCGG 2 cut(s) 61, 315
HhaI GCGC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 252
HpaII CCGG 2 cut(s) 61, 315
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 171, 284
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 2 cut(s) 49, 82
HpyAV CCTTC 1 cut(s) 335
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 209, 298, 373
HpyF3I CTNAG 4 cut(s) 142, 229, 243, 302
HspAI GCGC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 3 cut(s) 187, 224, 227
LweI GCATC 1 cut(s) 288
MaeI CTAG 2 cut(s) 12, 209
MboII GAAGA 4 cut(s) 98, 104, 186, 371
MhlI GDGCHC 2 cut(s) 37, 106
MluCI AATT 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 31, 407
MnlI CCTC 8 cut(s) 51, 120, 121, 159, 238, 267, 297, 387
MroNI GCCGGC 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 61, 315
MwoI GCNNNNNNNGC 4 cut(s) 82, 209, 298, 373
NaeI GCCGGC 1 cut(s) 316
NgoMIV GCCGGC 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 3 cut(s) 202, 214, 217
Psp124BI GAGCTC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SacI GAGCTC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 3 cut(s) 201, 213, 216
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 159
SduI GDGCHC 2 cut(s) 37, 106
SetI ASST 5 cut(s) 106, 120, 220, 241, 294
SfaNI GCATC 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 279
SsiI CCGC 2 cut(s) 30, 198
SspMI CTAG 2 cut(s) 12, 209
SstI GAGCTC 1 cut(s) 106
TaqI TCGA 1 cut(s) 234
TaqII GACCGA 1 cut(s) 37
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 252
TscAI CASTG 1 cut(s) 378
TseI GCWGC 3 cut(s) 200, 212, 215
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 378
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 12, 209
ZrmI AGTACT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.