Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009255

Physical Location & Seq

Genomic Coordinates Reverse (-)

211913 .. 214473

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCGAATCAGAGTACAGAGACGAATCAACCGTCGAATATGCAGACTTACGGTGTACCGATTTACGCCGCCGACTGGATTCCGGAGGTAGATGTCAGATCCAAAATCATAATGGATCCGGAGAAATCTGAAGATGATGATGAGTCGTCTTCTTCTTCTTCTTCTTCCCGGAGCTGCATCGTTTTGTCCGGCGGAGGCGGAGAGGGACGAAGTGGAATCTCTAATGTCATATTAATATGCCGTGTTGATCTAAACACCAATTCTCTCTCGGAACAACCTCTGGGTAGGCTTGTGGTTGGCTCTGATCTGCCTTATCGGATGGCTGTTCATCCTCGGGAAGGTGGTCTTATTTGCGCGTTGCCTAACAGTTGCAAACTGTTTCATTGGGAAGACATTATGAGCCGAGAGGATAATCAGGCTGGTGAGTCGGAGGAAGTGATTAAAGAGTTAAGAGATGTTGGACAACAGTTGGCTCTGGCGTTTAATCCGGAGGGGTCTGTTCTTGCTGCTGGTGCGGAGGATGGGACTTTGAGGGTTTTTAAATGGCCTAGCATGAATACTTTACTTAATGAGTCCCAGGCTCATTCTTCAGTTAAATGCCTTACTTTCAGCGAAAGTGGTCAATTTCTTGTATCTCTTGGCGGTCCAGTTTGTCGAGTTTGGGACGTGAATGCTTCTGCTGCTGTTGCCAGTCTATCAAAAGAGAAGGACGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCAATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGTGATACAAAATTATGGAAAAGAAAATGGTCGAAGCCTATAAAAAAGAACTCTATATCAGCTTTTAATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACCCTTGAAGGAGATGTTTTAATACTTGAATCGACAAGAATGCAAACTATCCAAGTCGTCAAGAAAGCGCATCTTGGTTTGGTCACAGCACTGACTTTCTCTCCTGATTCAAGGGGATTAGTGTCGGTATCTTTTGACTCAAGGGCAAGGCTGACCATGATTGAACAAAAGGGGGACAAACCTGGAGTAAGGTGGTGGCTACTGGTTTTATTGATAGTGTTGCTATACGTGGTTGCATACTATTATATGAAGGCAAAGGGTATCATACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006888 GO:0008047 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0042175 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098588 GO:0098772 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

393

Amino Acids

42.79

Weight (kDa)

5.47

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	148 - 251	1.9e-09	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	155 - 211	6.1e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	157 - 249	1.6e-09	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	157 - 245	5.1e-09	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	158 - 354	1.8e-19	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	158 - 344	4.1e-16	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	158 - 214	3.8e-06	WDR90/POC16, second beta-propeller
WD40_CDC20-Fz	PF24807	198 - 344	8.3e-07	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	217 - 357	4.7e-06	MABP1/WDR62 second WD40 domain
Beta-prop_EML_2	PF23414	219 - 351	3.8e-09	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01470 AT5G50550 AT5G50650
fragaria_vesca	FvH4_4g32580
malus_domestica	MD08G1204700.v1.1 MD13G1024400.v1.1 MD16G1027100.v1.1
prunus_persica	Prupe.1G326100_v2.0.a1 Prupe.1G326100_v2.0.a1
pyrus_communis	pycom13g02270 pycom16g02290
rosa_chinensis	RchiOBHm_Chr4g0441451
rosa_laevigata	RLG00000006091
rosa_multiflora	Rmu_sc0003360.1_g000007 Rmu_sc0011145.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382320
rosa_rugosa	Rorug04G0333800
rosa_samantha	Rh4AG385300 Rh4BG399500 Rh4CG414500 Rh4DG392100
rosa_wichuraiana	Rw4G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	741
AccII	CGCG	1 cut(s)	356
AccIII	TCCGGA	3 cut(s)	82, 118, 487
AciI	CCGC	5 cut(s)	69, 192, 198, 515, 642
AclWI	GGATC	3 cut(s)	93, 110, 123
AcuI	CTGAAG	2 cut(s)	150, 573
AfaI	GTAC	2 cut(s)	16, 57
AfiI	CCNNNNNNNGG	2 cut(s)	75, 338
AflIII	ACRYGT	1 cut(s)	806
AgsI	TTSAA	4 cut(s)	917, 938, 1020, 1073
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	2 cut(s)	576, 1090
AluBI	AGCT	4 cut(s)	174, 869, 884, 895
AluI	AGCT	4 cut(s)	174, 869, 884, 895
Alw26I	GTCTC	2 cut(s)	14, 883
AlwI	GGATC	3 cut(s)	93, 110, 123
Ama87I	CYCGRG	1 cut(s)	333
Aor13HI	TCCGGA	3 cut(s)	82, 118, 487
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	4 cut(s)	174, 506, 680, 773
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 49, 701, 733
AseI	ATTAAT	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	356, 979
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	644
BamHI	GGATCC	1 cut(s)	115
BbsI	GAAGAC	2 cut(s)	141, 396
BbvI	GCAGC	4 cut(s)	161, 493, 667, 760
BccI	CCATC	3 cut(s)	313, 515, 881
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	4 cut(s)	701, 735, 931, 965
BciT130I	CCWGG	2 cut(s)	578, 1092
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	14, 883
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	2 cut(s)	727, 738
BisI	GCNGC	5 cut(s)	69, 175, 507, 681, 774
BlsI	GCNGC	5 cut(s)	70, 176, 508, 682, 775
Bme1390I	CCNGG	3 cut(s)	169, 578, 1092
Bme18I	GGWCC	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	333
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	117, 910
BmrFI	CCNGG	3 cut(s)	169, 578, 1092
BmsI	GCATC	2 cut(s)	186, 988
BpiI	GAAGAC	2 cut(s)	141, 396
BpmI	CTGGAG	1 cut(s)	1113
BpuEI	CTTGAG	1 cut(s)	1033
BpuMI	CCSGG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	1138
BsaJI	CCNNGG	2 cut(s)	332, 576
BsaWI	WCCGGW	3 cut(s)	82, 118, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	994, 1024
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 338
Bse1I	ACTGG	4 cut(s)	80, 647, 690, 1116
Bse3DI	GCAATG	2 cut(s)	760, 768
BseAI	TCCGGA	3 cut(s)	82, 118, 487
BseBI	CCWGG	2 cut(s)	578, 1092
BseDI	CCNNGG	2 cut(s)	332, 576
BseGI	GGATG	3 cut(s)	324, 328, 526
BseLI	CCNNNNNNNGG	2 cut(s)	75, 338
BseMI	GCAATG	2 cut(s)	760, 768
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	4 cut(s)	80, 647, 690, 1116
BseXI	GCAGC	4 cut(s)	161, 493, 667, 760
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	5 cut(s)	83, 119, 169, 189, 488
BslFI	GGGAC	5 cut(s)	219, 538, 559, 677, 1097
BslI	CCNNNNNNNGG	2 cut(s)	75, 338
BsmAI	GTCTC	2 cut(s)	14, 883
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	5 cut(s)	219, 538, 559, 677, 1097
BsmI	GAATGC	2 cut(s)	676, 954
BsnI	GGCC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	333
Bsp13I	TCCGGA	3 cut(s)	82, 118, 487
Bsp143I	GATC	4 cut(s)	98, 115, 247, 304
BspACI	CCGC	5 cut(s)	69, 192, 198, 515, 642
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	893
BspEI	TCCGGA	3 cut(s)	82, 118, 487
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	2 cut(s)	117, 910
BspPI	GGATC	3 cut(s)	93, 110, 123
BsrDI	GCAATG	2 cut(s)	760, 768
BsrI	ACTGG	4 cut(s)	80, 647, 690, 1116
BssECI	CCNNGG	2 cut(s)	332, 576
BssMI	GATC	4 cut(s)	98, 115, 247, 304
Bst2UI	CCWGG	2 cut(s)	578, 1092
Bst4CI	ACNGT	6 cut(s)	33, 53, 368, 378, 468, 746
BstBAI	YACGTR	1 cut(s)	1138
BstC8I	GCNNGC	1 cut(s)	751
BstDEI	CTNAG	2 cut(s)	880, 1179
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	3 cut(s)	324, 328, 526
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	356, 979
BstKTI	GATC	4 cut(s)	101, 118, 250, 307
BstMAI	GTCTC	2 cut(s)	14, 883
BstMBI	GATC	4 cut(s)	98, 115, 247, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 680, 686
BstNI	CCWGG	2 cut(s)	578, 1092
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	3 cut(s)	167, 576, 1090
BstSFI	CTRYAG	2 cut(s)	727, 738
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	4 cut(s)	161, 493, 667, 760
BstV2I	GAAGAC	2 cut(s)	141, 396
BstX2I	RGATCY	2 cut(s)	98, 115
BstYI	RGATCY	2 cut(s)	98, 115
BsuRI	GGCC	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	3 cut(s)	324, 328, 526
BtsIMutI	CAGTG	3 cut(s)	751, 780, 998
Cac8I	GCNNGC	1 cut(s)	751
CfoI	GCGC	2 cut(s)	356, 979
Cfr13I	GGNCC	1 cut(s)	644
Csp6I	GTAC	2 cut(s)	15, 56
CviAII	CATG	3 cut(s)	553, 807, 1066
CviQI	GTAC	2 cut(s)	15, 56
DdeI	CTNAG	2 cut(s)	880, 1179
DpnI	GATC	4 cut(s)	100, 117, 249, 306
DpnII	GATC	4 cut(s)	98, 115, 247, 304
DraI	TTTAAA	1 cut(s)	541
EciI	GGCGGA	2 cut(s)	207, 213
Eco47I	GGWCC	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	150, 573
Eco88I	CYCGRG	1 cut(s)	333
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	576, 1090
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	3 cut(s)	556, 810, 1069
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 966, 998
FaqI	GGGAC	5 cut(s)	219, 538, 559, 677, 1097
FatI	CATG	3 cut(s)	552, 806, 1065
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	5 cut(s)	69, 175, 507, 681, 774
FokI	GGATG	3 cut(s)	315, 331, 533
Fsp4HI	GCNGC	5 cut(s)	69, 175, 507, 681, 774
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	2 cut(s)	355, 978
GluI	GCNGC	5 cut(s)	69, 175, 507, 681, 774
GsuI	CTGGAG	1 cut(s)	1113
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	5 cut(s)	83, 119, 169, 189, 488
HhaI	GCGC	2 cut(s)	356, 979
Hin1II	CATG	3 cut(s)	556, 810, 1069
Hin6I	GCGC	2 cut(s)	354, 977
HinP1I	GCGC	2 cut(s)	354, 977
HindIII	AAGCTT	1 cut(s)	893
HpaII	CCGG	5 cut(s)	83, 119, 169, 189, 488
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	56, 742
Hpy188I	TCNGA	7 cut(s)	12, 98, 130, 271, 304, 318, 430
Hpy188III	TCNNGA	6 cut(s)	83, 119, 335, 488, 970, 1013
Hpy8I	GTNNAC	2 cut(s)	56, 742
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	332, 700, 911, 1153
HpyCH4III	ACNGT	6 cut(s)	33, 53, 368, 378, 468, 746
HpyCH4IV	ACGT	3 cut(s)	666, 787, 1137
HpyCH4V	TGCA	8 cut(s)	43, 177, 372, 749, 776, 902, 952, 1145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 680, 686
HpyF3I	CTNAG	2 cut(s)	880, 1179
HpySE526I	ACGT	3 cut(s)	666, 787, 1137
Hsp92II	CATG	3 cut(s)	556, 810, 1069
HspAI	GCGC	2 cut(s)	354, 977
Kpn2I	TCCGGA	3 cut(s)	82, 118, 487
Kzo9I	GATC	4 cut(s)	98, 115, 247, 304
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	4 cut(s)	161, 493, 667, 760
LweI	GCATC	2 cut(s)	186, 988
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	3 cut(s)	666, 787, 1137
MaeIII	GTNAC	1 cut(s)	991
MalI	GATC	4 cut(s)	100, 117, 249, 306
MboI	GATC	4 cut(s)	98, 115, 247, 304
MboII	GAAGA	9 cut(s)	141, 143, 144, 147, 150, 153, 156, 401, 579
MflI	RGATCY	2 cut(s)	98, 115
MluCI	AATT	3 cut(s)	259, 623, 818
MlyI	GAGTC	4 cut(s)	152, 434, 581, 1040
MmeI	TCCRAC	2 cut(s)	408, 439
MroI	TCCGGA	3 cut(s)	82, 118, 487
MseI	TTAA	9 cut(s)	233, 441, 449, 483, 540, 567, 594, 873, 929
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	5 cut(s)	83, 119, 169, 189, 488
MspR9I	CCNGG	3 cut(s)	169, 578, 1092
Mva1269I	GAATGC	2 cut(s)	676, 954
MvaI	CCWGG	2 cut(s)	578, 1092
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	512, 680, 686
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	4 cut(s)	98, 115, 247, 304
NlaIII	CATG	3 cut(s)	556, 810, 1069
NlaIV	GGNNCC	2 cut(s)	117, 910
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	991
NspI	RCATGY	1 cut(s)	810
PciI	ACATGT	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	2 cut(s)	676, 954
PfeI	GAWTC	7 cut(s)	7, 25, 79, 216, 732, 938, 1016
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	70, 176, 508, 682, 775
PleI	GAGTC	4 cut(s)	151, 433, 580, 1040
PpsI	GAGTC	4 cut(s)	151, 433, 580, 1040
Ppu21I	YACGTR	1 cut(s)	1138
PscI	ACATGT	1 cut(s)	806
PshBI	ATTAAT	1 cut(s)	233
PsiI	TTATAA	1 cut(s)	803
Psp6I	CCWGG	2 cut(s)	576, 1090
PspGI	CCWGG	2 cut(s)	576, 1090
PspN4I	GGNNCC	2 cut(s)	117, 910
PspPI	GGNCC	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	98, 115
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	2 cut(s)	16, 57
RsaNI	GTAC	2 cut(s)	15, 56
SaqAI	TTAA	9 cut(s)	233, 441, 449, 483, 540, 567, 594, 873, 929
SatI	GCNGC	5 cut(s)	69, 175, 507, 681, 774
Sau3AI	GATC	4 cut(s)	98, 115, 247, 304
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	4 cut(s)	152, 434, 581, 1040
ScrFI	CCNGG	3 cut(s)	169, 578, 1092
SfaNI	GCATC	2 cut(s)	186, 988
SfcI	CTRYAG	2 cut(s)	727, 738
SinI	GGWCC	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	1048
SmoI	CTYRAG	1 cut(s)	1048
Sse9I	AATT	3 cut(s)	259, 623, 818
SsiI	CCGC	5 cut(s)	69, 192, 198, 515, 642
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	3 cut(s)	167, 576, 1090
TaaI	ACNGT	6 cut(s)	33, 53, 368, 378, 468, 746
TaiI	ACGT	3 cut(s)	669, 790, 1140
TaqI	TCGA	4 cut(s)	35, 655, 839, 941
TasI	AATT	3 cut(s)	259, 623, 818
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	7 cut(s)	7, 25, 79, 216, 732, 938, 1016
Tru1I	TTAA	9 cut(s)	233, 441, 449, 483, 540, 567, 594, 873, 929
Tru9I	TTAA	9 cut(s)	233, 441, 449, 483, 540, 567, 594, 873, 929
TscAI	CASTG	3 cut(s)	751, 787, 1005
TseFI	GTSAC	1 cut(s)	991
TseI	GCWGC	4 cut(s)	174, 506, 680, 773
Tsp45I	GTSAC	1 cut(s)	991
TspDTI	ATGAA	5 cut(s)	317, 371, 569, 771, 1172
TspRI	CASTG	3 cut(s)	751, 787, 1005
VpaK11BI	GGWCC	1 cut(s)	644
VspI	ATTAAT	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	741
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.