Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011145.1

Orthogroup ID

OG0009255

Physical Location & Seq

Genomic Coordinates Forward (+)

1159 .. 2410

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011145.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggaagcagaagctctgaatcacataaagtacggcatccctttctacggcatcggttgggttcccgacggcatccctctcacctcctcggaacggccggagcaggagaacaacgatcagaaaaccgagactcggaccgagtcgactcagtcggttcccgattcgaaccatatagtattggccggcggtggcggcgagggcaacagcggcgtcaaaaacgccgtcgttctcatccagttcgatcccgcctcgtcttctatctcccatgagccggtggctaagctcgggttgggctctgatttgccttacagaatggcggttcatcccggtgctgacggtctgatttgttcgtttcctgaaagctgcagttggtttgaatgggagaaagaattgagggagggagctcaaaagctaagtgtgaagcaatctgatagactacttaaacaattgcaagatgtagggcaacagttagcgctggcatttaacaaagaaggttcggtgcttgctaccggaggcgaggatggcaatttaagggttttcaagtggcccagcatggaaattatgttcactgaagctcaagctcatagaacagtcaagcagttagatttcagccatgacgggaaatttcttgtctccttgggacaaagtggccctggtagagtctgggatgtgacttcagctgcagttgtagctactttaccaacggaaaaggtgggcagttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006888 GO:0008047 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0042175 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098588 GO:0098772 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

241

Amino Acids

26.1

Weight (kDa)

5.08

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01470 AT5G50550 AT5G50650
fragaria_vesca	FvH4_4g32580
malus_domestica	MD08G1204700.v1.1 MD13G1024400.v1.1 MD16G1027100.v1.1
prunus_persica	Prupe.1G326100_v2.0.a1 Prupe.1G326100_v2.0.a1
pyrus_communis	pycom13g02270 pycom16g02290
rosa_chinensis	RchiOBHm_Chr4g0441451
rosa_laevigata	RLG00000006091
rosa_multiflora	Rmu_sc0003360.1_g000007 Rmu_sc0011145.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382320
rosa_rugosa	Rorug04G0333800
rosa_samantha	Rh4AG385300 Rh4BG399500 Rh4CG414500 Rh4DG392100
rosa_wichuraiana	Rw4G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	143
AciI	CCGC	5 cut(s)	186, 192, 207, 246, 317
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	2 cut(s)	95, 180
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	2 cut(s)	591, 660
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	4 cut(s)	47, 93, 132, 271
AgsI	TTSAA	2 cut(s)	377, 541
AjnI	CCWGG	1 cut(s)	652
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	9 cut(s)	14, 283, 363, 404, 412, 575, 581, 680, 692
AluI	AGCT	9 cut(s)	14, 283, 363, 404, 412, 575, 581, 680, 692
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	122, 637
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	723
Ama87I	CYCGRG	1 cut(s)	284
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	4 cut(s)	95, 180, 545, 649
ApeKI	GCWGC	2 cut(s)	363, 680
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	3 cut(s)	135, 546, 650
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	135
BanII	GRGCYC	2 cut(s)	296, 406
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	350, 667
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	5 cut(s)	49, 64, 85, 110, 206
BciT130I	CCWGG	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	122, 637
BfmI	CTRYAG	2 cut(s)	364, 681
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	4 cut(s)	193, 208, 364, 681
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	4 cut(s)	194, 209, 365, 682
Bme1390I	CCNGG	2 cut(s)	327, 654
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	135, 546, 650
BmiI	GGNNCC	2 cut(s)	63, 156
BmrFI	CCNGG	2 cut(s)	327, 654
BmsI	GCATC	3 cut(s)	45, 60, 81
BpiI	GAAGAC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	87, 636, 652
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 93, 132, 271
Bse118I	RCCGGY	2 cut(s)	182, 271
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	87, 636, 652
BseGI	GGATG	6 cut(s)	36, 72, 231, 322, 526, 673
BseLI	CCNNNNNNNGG	4 cut(s)	47, 93, 132, 271
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	76
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	350, 667
BseYI	CCCAGC	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	4 cut(s)	97, 182, 547, 651
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	5 cut(s)	98, 183, 272, 327, 510
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	4 cut(s)	47, 93, 132, 271
BsmAI	GTCTC	2 cut(s)	122, 637
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	4 cut(s)	97, 182, 547, 651
BsoBI	CYCGRG	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	296, 406
Bsp143I	GATC	2 cut(s)	115, 241
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	5 cut(s)	186, 192, 207, 246, 317
BspANI	GGCC	4 cut(s)	97, 182, 547, 651
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	63, 156
BspMAI	CTGCAG	2 cut(s)	368, 685
BspPI	GGATC	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	182, 271
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	2 cut(s)	182, 271
BssECI	CCNNGG	3 cut(s)	87, 636, 652
BssMI	GATC	2 cut(s)	115, 241
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	338, 468, 592
BstACI	GRCGYC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	184, 477, 504
BstDEI	CTNAG	3 cut(s)	147, 279, 413
BstF5I	GGATG	6 cut(s)	36, 72, 231, 322, 526, 673
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	118, 244
BstMAI	GTCTC	2 cut(s)	122, 637
BstMBI	GATC	2 cut(s)	115, 241
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	5 cut(s)	192, 198, 207, 522, 689
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	325, 652
BstSFI	CTRYAG	2 cut(s)	364, 681
BstV1I	GCAGC	2 cut(s)	350, 667
BstV2I	GAAGAC	1 cut(s)	246
BstZI	CGGCCG	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	97, 182, 547, 651
BtsCI	GGATG	6 cut(s)	36, 72, 231, 322, 526, 673
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	3 cut(s)	184, 477, 504
CaiI	CAGNNNCTG	1 cut(s)	723
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	2 cut(s)	182, 271
Cfr13I	GGNCC	3 cut(s)	135, 546, 650
CpoI	CGGWCCG	1 cut(s)	135
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	31
CspI	CGGWCCG	1 cut(s)	135
CviAII	CATG	3 cut(s)	266, 553, 614
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	147, 279, 413
DpnI	GATC	2 cut(s)	117, 243
DpnII	GATC	2 cut(s)	115, 241
EaeI	YGGCCR	2 cut(s)	95, 180
EagI	CGGCCG	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	404
EclXI	CGGCCG	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	636
Eco24I	GRGCYC	2 cut(s)	296, 406
Eco47I	GGWCC	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	2 cut(s)	591, 660
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	636
EcoT38I	GRGCYC	2 cut(s)	296, 406
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	3 cut(s)	269, 556, 617
FaiI	YATR	8 cut(s)	26, 171, 173, 267, 554, 563, 585, 615
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	3 cut(s)	265, 552, 613
FauI	CCCGC	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	193, 208, 364, 681
FokI	GGATG	6 cut(s)	23, 59, 218, 309, 533, 680
FriOI	GRGCYC	2 cut(s)	296, 406
Fsp4HI	GCNGC	4 cut(s)	193, 208, 364, 681
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	4 cut(s)	193, 208, 364, 681
GsaI	CCCAGC	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	97, 182, 547, 651
HapII	CCGG	5 cut(s)	98, 183, 272, 327, 510
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	269, 556, 617
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	6 cut(s)	19, 130, 140, 145, 161, 660
HpaII	CCGG	5 cut(s)	98, 183, 272, 327, 510
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	144, 567
Hpy188I	TCNGA	7 cut(s)	18, 91, 120, 135, 298, 342, 430
Hpy188III	TCNNGA	3 cut(s)	65, 158, 356
Hpy8I	GTNNAC	2 cut(s)	144, 567
Hpy99I	CGWCG	2 cut(s)	71, 227
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	3 cut(s)	338, 468, 592
HpyCH4V	TGCA	3 cut(s)	366, 451, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	192, 198, 207, 522, 689
HpyF3I	CTNAG	3 cut(s)	147, 279, 413
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	269, 556, 617
HspAI	GCGC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	115, 241
LmnI	GCTCC	2 cut(s)	100, 401
Lsp1109I	GCAGC	2 cut(s)	350, 667
LweI	GCATC	3 cut(s)	45, 60, 81
MaeIII	GTNAC	2 cut(s)	670, 719
MalI	GATC	2 cut(s)	117, 243
MboI	GATC	2 cut(s)	115, 241
MboII	GAAGA	1 cut(s)	246
MfeI	CAATTG	1 cut(s)	446
MhlI	GDGCHC	2 cut(s)	296, 406
MluCI	AATT	5 cut(s)	389, 446, 526, 558, 623
MlyI	GAGTC	4 cut(s)	124, 139, 149, 669
MnlI	CCTC	9 cut(s)	87, 94, 97, 190, 259, 387, 391, 506, 511
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	3 cut(s)	441, 483, 530
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	207, 680
MspI	CCGG	5 cut(s)	98, 183, 272, 327, 510
MspR9I	CCNGG	2 cut(s)	327, 654
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	5 cut(s)	192, 198, 207, 522, 689
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	115, 241
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	3 cut(s)	269, 556, 617
NlaIV	GGNNCC	2 cut(s)	63, 156
NmuCI	GTSAC	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	164
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	19, 161
PflFI	GACNNNGTC	2 cut(s)	139, 148
PkrI	GCNGC	4 cut(s)	194, 209, 365, 682
PleI	GAGTC	4 cut(s)	124, 139, 148, 668
PpsI	GAGTC	4 cut(s)	124, 139, 148, 668
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	652
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	63, 156
PspPI	GGNCC	3 cut(s)	135, 546, 650
PstI	CTGCAG	2 cut(s)	368, 685
PstNI	CAGNNNCTG	1 cut(s)	723
PsyI	GACNNNGTC	2 cut(s)	139, 148
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	327
Rsr2I	CGGWCCG	1 cut(s)	135
RsrII	CGGWCCG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	406
SalI	GTCGAC	1 cut(s)	142
SaqAI	TTAA	3 cut(s)	441, 483, 530
SatI	GCNGC	4 cut(s)	193, 208, 364, 681
Sau3AI	GATC	2 cut(s)	115, 241
Sau96I	GGNCC	3 cut(s)	135, 546, 650
SchI	GAGTC	4 cut(s)	124, 139, 149, 669
ScrFI	CCNGG	2 cut(s)	327, 654
SduI	GDGCHC	2 cut(s)	296, 406
SfaNI	GCATC	3 cut(s)	45, 60, 81
SfcI	CTRYAG	2 cut(s)	364, 681
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	5 cut(s)	389, 446, 526, 558, 623
SsiI	CCGC	5 cut(s)	186, 192, 207, 246, 317
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	325, 652
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	3 cut(s)	338, 468, 592
TaqI	TCGA	3 cut(s)	143, 164, 240
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	5 cut(s)	389, 446, 526, 558, 623
TauI	GCSGC	2 cut(s)	195, 210
TfiI	GAWTC	2 cut(s)	19, 161
Tru1I	TTAA	3 cut(s)	441, 483, 530
Tru9I	TTAA	3 cut(s)	441, 483, 530
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	2 cut(s)	363, 680
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	1 cut(s)	574
Tth111I	GACNNNGTC	2 cut(s)	139, 148
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.