Rmu_sc0003360.1_g000007

SEC12-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003360.1
Physical Location & Seq
Forward (+)
41383 .. 44417
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003360.1_g000007.1.cds

Sequence Viewer

Length: 1209 bp
atggaagcagaagctctgaatcacataaagtacggcatccctttctacggcatcggttgggttcccgacggcatccctctcacctcctcggaacggccggagcaggagaacaacgatcagaaaaccgagactcggaccgagtcgactcagtcggttcccgattcgaaccatatagtattggccggcggtggcggcgagggcaacagcggcgtcaaaaacgccgtcgttctcatccagttcgatcccgcctcgtcttctatctcccatgagccggtggctaagctcgggttaggctctgatttgccttacagaatggcggttcatcccagtgctgacggtctgatttgttcctttcctgaaagctgcagttggtttgaatgggagaaagaattgagggagggagctcataggctaagtgtgaagcaatctgatagactacttaaacaattgcaagatgtagggcaacagttagcgctggcatttaacaaagaaggttcggtgcttgctaccggaggcgaggatggcaatttaagggttttcaagtggcccagcatggaaattatgttcactgaagctcaagctcatagaacagtcaagcagttagatttcagccatgacgggaaatttcttgtctccttgggacaaagtggccctggtagagtctgggatgtgacttcagctgcagttgtagctactttaccaacggaaaaggatgaggtattttgtgcatgcaaattttctctagtgaacaatgggattgaagttctacatcttgcagataaagatggaatcattgtaacatggaacacaaccacatggaggagggttcgatccaagcgaattactcgagatggcatcaccgcctttgatgtttcggctgatggaaagctccttgcatgcgggacaactgctggagatcttttgatactaaagtcagccggattgcgggttcaaaaagtcatcccaaaagcacacagtgggtttgtaactgcgttgagtttctcgcatgattcaagagttttggcttccacatcaatggactcaagtgcaagggtgtccacacttgaggaagtgaagaaaagtggagtgagcttatgggtcgttatactcattatcctagtatccattctcgcatatttcctaaacgatcctgagagctggacaatgttgaagtctgaattggagaaagtttacagcttgtggcgttga

Protein Analysis

402

Amino Acids

43.96

Weight (kDa)

5.85

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AciI CCGC 8 cut(s) 186, 192, 207, 246, 317, 861, 900, 946
AclWI GGATC 3 cut(s) 236, 825, 1142
AcoI YGGCCR 2 cut(s) 95, 180
AcsI RAATTY 2 cut(s) 623, 734
AcuI CTGAAG 2 cut(s) 591, 660
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 977
AfaI GTAC 1 cut(s) 32
AfeI AGCGCT 1 cut(s) 474
AfiI CCNNNNNNNGG 6 cut(s) 47, 93, 132, 271, 819, 945
AgsI TTSAA 6 cut(s) 377, 541, 761, 953, 1014, 1171
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 1163, 1195
AloI GAACNNNNNNTCC 4 cut(s) 548, 580, 933, 965
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 122, 637
AlwI GGATC 3 cut(s) 236, 825, 1142
Ama87I CYCGRG 2 cut(s) 284, 846
Aor51HI AGCGCT 1 cut(s) 474
AoxI GGCC 4 cut(s) 95, 180, 545, 649
ApeKI GCWGC 2 cut(s) 363, 680
ApoI RAATTY 2 cut(s) 623, 734
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 135, 546, 650
AsuHPI GGTGA 2 cut(s) 73, 850
AsuII TTCGAA 1 cut(s) 164
AvaI CYCGRG 2 cut(s) 284, 846
AvaII GGWCC 1 cut(s) 135
BaeI ACNNNNGTAYC 2 cut(s) 917, 950
BanII GRGCYC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 350, 667
BccI CCATC 4 cut(s) 515, 779, 845, 875
BceAI ACGGC 5 cut(s) 49, 64, 85, 110, 206
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 1 cut(s) 1132
BcoDI GTCTC 2 cut(s) 122, 637
BfaI CTAG 2 cut(s) 743, 1118
BfmI CTRYAG 2 cut(s) 364, 681
BfoI RGCGCY 1 cut(s) 476
BfuI GTATCC 1 cut(s) 1132
BglII AGATCT 1 cut(s) 916
BisI GCNGC 4 cut(s) 193, 208, 364, 681
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 4 cut(s) 194, 209, 365, 682
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 2 cut(s) 284, 846
BmgT120I GGNCC 3 cut(s) 135, 546, 650
BmiI GGNNCC 2 cut(s) 63, 156
BmrFI CCNGG 1 cut(s) 654
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 4 cut(s) 45, 60, 81, 864
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 933
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 3 cut(s) 561, 1027, 1085
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 87, 636, 652
BsaWI WCCGGW 1 cut(s) 509
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 93, 132, 271, 819, 945
Bse118I RCCGGY 2 cut(s) 182, 271
Bse1I ACTGG 2 cut(s) 235, 327
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 87, 636, 652
BseGI GGATG 8 cut(s) 36, 72, 231, 322, 526, 673, 718, 960
BseLI CCNNNNNNNGG 6 cut(s) 47, 93, 132, 271, 819, 945
BseMII CTCAG 2 cut(s) 161, 1143
BseNI ACTGG 2 cut(s) 235, 327
BseRI GAGGAG 2 cut(s) 76, 835
BseX3I CGGCCG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 350, 667
BseYI CCCAGC 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 4 cut(s) 97, 182, 547, 651
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 2 cut(s) 284, 846
BsiSI CCGG 5 cut(s) 98, 183, 272, 510, 939
BslFI GGGAC 2 cut(s) 654, 916
BslI CCNNNNNNNGG 6 cut(s) 47, 93, 132, 271, 819, 945
BsmAI GTCTC 2 cut(s) 122, 637
BsmFI GGGAC 2 cut(s) 654, 916
BsnI GGCC 4 cut(s) 97, 182, 547, 651
BsoBI CYCGRG 2 cut(s) 284, 846
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 5 cut(s) 115, 241, 830, 916, 1147
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 8 cut(s) 186, 192, 207, 246, 317, 861, 900, 946
BspANI GGCC 4 cut(s) 97, 182, 547, 651
BspCNI CTCAG 2 cut(s) 160, 1144
BspLI GGNNCC 2 cut(s) 63, 156
BspMAI CTGCAG 2 cut(s) 368, 685
BspPI GGATC 3 cut(s) 236, 825, 1142
BspT104I TTCGAA 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 182, 271
BsrI ACTGG 2 cut(s) 235, 327
BssAI RCCGGY 2 cut(s) 182, 271
BssECI CCNNGG 3 cut(s) 87, 636, 652
BssMI GATC 5 cut(s) 115, 241, 830, 916, 1147
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 4 cut(s) 338, 468, 592, 977
BstACI GRCGYC 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 5 cut(s) 184, 477, 504, 730, 898
BstDEI CTNAG 4 cut(s) 147, 279, 413, 1152
BstF5I GGATG 8 cut(s) 36, 72, 231, 322, 526, 673, 718, 960
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 5 cut(s) 118, 244, 833, 919, 1150
BstMAI GTCTC 2 cut(s) 122, 637
BstMBI GATC 5 cut(s) 115, 241, 830, 916, 1147
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 5 cut(s) 192, 198, 207, 522, 689
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 2 cut(s) 732, 900
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 2 cut(s) 364, 681
BstV1I GCAGC 2 cut(s) 350, 667
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 916
BstXI CCANNNNNNTGG 1 cut(s) 1036
BstYI RGATCY 1 cut(s) 916
BstZI CGGCCG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 1132
BsuRI GGCC 4 cut(s) 97, 182, 547, 651
BtsCI GGATG 8 cut(s) 36, 72, 231, 322, 526, 673, 718, 960
BtsIMutI CAGTG 3 cut(s) 334, 567, 982
Cac8I GCNNGC 5 cut(s) 184, 477, 504, 730, 898
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 2 cut(s) 182, 271
Cfr13I GGNCC 3 cut(s) 135, 546, 650
CpoI CGGWCCG 1 cut(s) 135
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 31
CspI CGGWCCG 1 cut(s) 135
CviAII CATG 8 cut(s) 266, 553, 614, 729, 801, 816, 897, 1007
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 4 cut(s) 147, 279, 413, 1152
DpnI GATC 5 cut(s) 117, 243, 832, 918, 1149
DpnII GATC 5 cut(s) 115, 241, 830, 916, 1147
DraIII CACNNNGTG 1 cut(s) 977
EaeI YGGCCR 2 cut(s) 95, 180
EagI CGGCCG 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 404
EclXI CGGCCG 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 474
Eco52I CGGCCG 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 591, 660
Eco88I CYCGRG 2 cut(s) 284, 846
EcoICRI GAGCTC 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 8 cut(s) 269, 556, 617, 732, 804, 819, 900, 1010
FaqI GGGAC 2 cut(s) 654, 916
FatI CATG 8 cut(s) 265, 552, 613, 728, 800, 815, 896, 1006
FauI CCCGC 3 cut(s) 253, 893, 939
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 193, 208, 364, 681
FokI GGATG 8 cut(s) 23, 59, 218, 309, 533, 680, 725, 947
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 4 cut(s) 193, 208, 364, 681
FspBI CTAG 2 cut(s) 743, 1118
GlaI GCGC 1 cut(s) 474
GluI GCNGC 4 cut(s) 193, 208, 364, 681
GsaI CCCAGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 4 cut(s) 97, 182, 547, 651
HapII CCGG 5 cut(s) 98, 183, 272, 510, 939
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 8 cut(s) 269, 556, 617, 732, 804, 819, 900, 1010
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 9 cut(s) 19, 130, 140, 145, 161, 660, 789, 1010, 1040
HpaII CCGG 5 cut(s) 98, 183, 272, 510, 939
HphI GGTGA 2 cut(s) 73, 850
Hpy166II GTNNAC 5 cut(s) 144, 567, 748, 1059, 1192
Hpy188I TCNGA 8 cut(s) 18, 91, 120, 135, 298, 342, 430, 1177
Hpy188III TCNNGA 6 cut(s) 65, 158, 356, 848, 1014, 1151
Hpy8I GTNNAC 5 cut(s) 144, 567, 748, 1059, 1192
Hpy99I CGWCG 2 cut(s) 71, 227
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 4 cut(s) 338, 468, 592, 977
HpyCH4V TGCA 8 cut(s) 366, 451, 683, 728, 732, 776, 896, 1049
HpyF10VI GCNNNNNNNGC 5 cut(s) 192, 198, 207, 522, 689
HpyF3I CTNAG 4 cut(s) 147, 279, 413, 1152
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 8 cut(s) 269, 556, 617, 732, 804, 819, 900, 1010
HspAI GCGC 1 cut(s) 473
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 5 cut(s) 115, 241, 830, 916, 1147
LmnI GCTCC 3 cut(s) 100, 401, 894
Lsp1109I GCAGC 2 cut(s) 350, 667
LweI GCATC 4 cut(s) 45, 60, 81, 864
MaeI CTAG 2 cut(s) 743, 1118
MaeIII GTNAC 3 cut(s) 670, 796, 985
MalI GATC 5 cut(s) 117, 243, 832, 918, 1149
MboI GATC 5 cut(s) 115, 241, 830, 916, 1147
MboII GAAGA 2 cut(s) 246, 1087
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 8 cut(s) 389, 446, 526, 558, 623, 734, 840, 1178
MlyI GAGTC 5 cut(s) 124, 139, 149, 669, 1034
MroNI GCCGGC 1 cut(s) 182
MseI TTAA 3 cut(s) 441, 483, 530
MslI CAYNNNNRTG 2 cut(s) 327, 1034
MspA1I CMGCKG 2 cut(s) 207, 680
MspI CCGG 5 cut(s) 98, 183, 272, 510, 939
MspR9I CCNGG 1 cut(s) 654
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 192, 198, 207, 522, 689
NaeI GCCGGC 1 cut(s) 184
NdeII GATC 5 cut(s) 115, 241, 830, 916, 1147
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 8 cut(s) 269, 556, 617, 732, 804, 819, 900, 1010
NlaIV GGNNCC 2 cut(s) 63, 156
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 2 cut(s) 732, 900
NspV TTCGAA 1 cut(s) 164
PaeI GCATGC 2 cut(s) 732, 900
PaeR7I CTCGAG 1 cut(s) 846
PcsI WCGNNNNNNNCGW 1 cut(s) 835
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 4 cut(s) 19, 161, 789, 1010
PflFI GACNNNGTC 2 cut(s) 139, 148
PkrI GCNGC 4 cut(s) 194, 209, 365, 682
PleI GAGTC 5 cut(s) 124, 139, 148, 668, 1034
PpsI GAGTC 5 cut(s) 124, 139, 148, 668, 1034
Psp124BI GAGCTC 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 2 cut(s) 63, 156
PspPI GGNCC 3 cut(s) 135, 546, 650
PstI CTGCAG 2 cut(s) 368, 685
PsuI RGATCY 1 cut(s) 916
PsyI GACNNNGTC 2 cut(s) 139, 148
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 327, 1034
Rsr2I CGGWCCG 1 cut(s) 135
RsrII CGGWCCG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 406
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 3 cut(s) 441, 483, 530
SatI GCNGC 4 cut(s) 193, 208, 364, 681
Sau3AI GATC 5 cut(s) 115, 241, 830, 916, 1147
Sau96I GGNCC 3 cut(s) 135, 546, 650
SchI GAGTC 5 cut(s) 124, 139, 149, 669, 1034
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 4 cut(s) 45, 60, 81, 864
SfcI CTRYAG 2 cut(s) 364, 681
Sfr274I CTCGAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 846
SmiMI CAYNNNNRTG 2 cut(s) 327, 1034
SmlI CTYRAG 4 cut(s) 576, 846, 1042, 1064
SmoI CTYRAG 4 cut(s) 576, 846, 1042, 1064
SphI GCATGC 2 cut(s) 732, 900
Sse9I AATT 8 cut(s) 389, 446, 526, 558, 623, 734, 840, 1178
SsiI CCGC 8 cut(s) 186, 192, 207, 246, 317, 861, 900, 946
SspMI CTAG 2 cut(s) 743, 1118
SstI GAGCTC 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 4 cut(s) 338, 468, 592, 977
TaqI TCGA 5 cut(s) 143, 164, 240, 829, 847
TaqII GACCGA 1 cut(s) 152
TasI AATT 8 cut(s) 389, 446, 526, 558, 623, 734, 840, 1178
TauI GCSGC 2 cut(s) 195, 210
TfiI GAWTC 4 cut(s) 19, 161, 789, 1010
Tru1I TTAA 3 cut(s) 441, 483, 530
Tru9I TTAA 3 cut(s) 441, 483, 530
TscAI CASTG 3 cut(s) 334, 574, 982
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 2 cut(s) 363, 680
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 719
TspRI CASTG 3 cut(s) 334, 574, 982
Tth111I GACNNNGTC 2 cut(s) 139, 148
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 2 cut(s) 623, 734
XceI RCATGY 2 cut(s) 732, 900
XhoI CTCGAG 1 cut(s) 846
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 2 cut(s) 743, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.