MD13G1024400.v1.1

SEC12-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
1731806 .. 1734856
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1024400.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGACACTCCCAATAACTACCAGAAGTACGGCGTCCCTTTCTACGCCGCCGCTTGGCTTCCGGGTCTCGGCAAATCTAAACGACCGGACCAGGAAGACGACGCCGGCGACGACAAAAAGGAAATCGAGACCCAGACTGAACTAGCCCAATTCGATTCCAGCCAAAACTACGTCGTTTTCTCCGGCGGTGGCGGCGAGGGCCGCAGCGGCGTCCCAAACGCCATCCTTATAGCCCAATTCGATCCCGCCTCCGTTTCTCTCTCCAATCAGCCGGTGGCTAAGCTCAACACTGGCTCCAATTTGCCGTATAGAATGGCGGTTCACCCCGCCGGTAGCGGCCTCGTTTGTTCTTTCCCTGATAGTTGCAGATGGTTTGAATTGGAGGAAGAAAGCGATGAAGTACCTAAACTGGCATTGAGGCAGTCTGAGAGAGTGCTGGAGCAATTGCAAGATGTTGGACAACAGTTAGCTTTGGCGTTTGACAGAGACGGTTCCATGCTTGCTGCTGGAGGCGAGGATGGCAAGTTAAGGGTTTTCAAGTGGCCTAGCATGGTAATTATTCTCGATGAAGCTAAAGCTCATACTACAATGAAGCAATTAGATTTCAGCCCTGATGGGAAATTTCTCATCTCCTTAGGAGATAGAGGCCCTGGTAGGGTGTGGGATGTAACTTCATCTACCGTTGTAGCTTCTCTACCAGCGGAAAGGGATGAGGTTTTTTGCGGATGCAGATTTTCTGTAATTGATGATGGGGTTCATATTTTATATATTGCAGATAAATCGGGAAGCATTGTAACATGGAACACGACCACTTGGAAGAGGATTGGATCAAAGACCATTAGTAGAGACATTATTTCCGCCTTTGATGTTTCAGCTGATGGAAAACTCCTTGCATGTGGGACAGCTGTTGGAGATCTTGTGATAGTAAATCCAACCAGAATGCGGATTCATAAAGTGGTTAAGAAAGCACACATGGGCTTGGTAACTGCATTGAGTTTCTCTCATGATTCAAGAGCTTTGGCTTCGGCATCCATGGATTCAAGTGCAAGGGTGTCCACACTTGAGGTGGAGAAGAAAAATGGAGGAGTGTTGAGCTTATGGGTCATCATACTCATCATCCTGATAGCCATTGCTGCATATTTCCAGAAGAATCCTGACAAGTTGCCTTCGGCGTTGAAAGGATTTTAA

Protein Analysis

396

Amino Acids

42.8

Weight (kDa)

5.63

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 124 - 236 5e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 139 - 302 1.6e-10 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 141 - 233 3.8e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 142 - 273 1e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 157 - 300 3.1e-10 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 157 - 344 4e-14 WDHD1 first WD40 domain
WDR55 PF24796 158 - 342 1.3e-08 WDR55
Beta-prop_WDR36-Utp21_1st PF25171 219 - 348 9.1e-06 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 221 - 354 1.1e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR19_1st PF23389 250 - 356 3.2e-06 WDR19 first beta-propeller
Beta-prop_THOC3 PF25174 253 - 357 2.6e-08 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 260 - 351 2e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 262 - 353 1e-06 WDR3 first beta-propeller domain
Beta-prop_Vps41 PF23411 278 - 359 1.8e-06 Vps42 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 236, 835
AcsI RAATTY 1 cut(s) 620
AcyI GRCGYC 3 cut(s) 33, 102, 210
AfaI GTAC 2 cut(s) 29, 402
AfiI CCNNNNNNNGG 4 cut(s) 54, 68, 655, 942
AgsI TTSAA 5 cut(s) 377, 538, 1011, 1041, 1177
AjnI CCWGG 2 cut(s) 90, 649
AluBI AGCT 9 cut(s) 283, 470, 572, 578, 689, 875, 905, 1016, 1095
AluI AGCT 9 cut(s) 283, 470, 572, 578, 689, 875, 905, 1016, 1095
Alw26I GTCTC 4 cut(s) 71, 122, 480, 840
AlwI GGATC 2 cut(s) 236, 835
AoxI GGCC 4 cut(s) 199, 337, 542, 646
ApeKI GCWGC 3 cut(s) 204, 503, 1133
ApoI RAATTY 1 cut(s) 620
AspS9I GGNCC 3 cut(s) 88, 199, 647
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 634
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 216, 490, 1120
BccI CCATC 6 cut(s) 230, 363, 512, 608, 743, 872
BceAI ACGGC 2 cut(s) 46, 289
BcgI CGANNNNNNTGC 2 cut(s) 762, 796
BciT130I CCWGG 2 cut(s) 92, 651
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 4 cut(s) 71, 122, 480, 840
BfaI CTAG 2 cut(s) 143, 546
BglI GCCNNNNNGGC 1 cut(s) 207
BglII AGATCT 1 cut(s) 913
BisI GCNGC 9 cut(s) 48, 51, 193, 202, 205, 208, 337, 504, 1134
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 9 cut(s) 49, 52, 194, 203, 206, 209, 338, 505, 1135
Bme1390I CCNGG 3 cut(s) 63, 92, 651
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 88, 199, 647
BmiI GGNNCC 2 cut(s) 295, 493
BmrFI CCNGG 3 cut(s) 63, 92, 651
BmsI GCATC 2 cut(s) 716, 1037
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 985, 1017
BpmI CTGGAG 2 cut(s) 458, 528
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 1082
BpuMI CCSGG 1 cut(s) 63
BsaHI GRCGYC 3 cut(s) 33, 102, 210
BsaI GGTCTC 2 cut(s) 71, 122
BsaJI CCNNGG 2 cut(s) 649, 1032
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 903, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 68, 655, 942
Bse118I RCCGGY 3 cut(s) 104, 271, 329
Bse1I ACTGG 2 cut(s) 295, 414
Bse21I CCTNAGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 1128
BseBI CCWGG 2 cut(s) 92, 651
BseDI CCNNGG 2 cut(s) 649, 1032
BseGI GGATG 7 cut(s) 222, 523, 670, 715, 731, 1028, 1116
BseLI CCNNNNNNNGG 4 cut(s) 54, 68, 655, 942
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 295, 414
BseRI GAGGAG 1 cut(s) 1098
BseXI GCAGC 3 cut(s) 216, 490, 1120
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 4 cut(s) 201, 339, 544, 648
BsiEI CGRYCG 1 cut(s) 86
BsiSI CCGG 6 cut(s) 62, 86, 105, 183, 272, 330
BslFI GGGAC 3 cut(s) 20, 197, 913
BslI CCNNNNNNNGG 4 cut(s) 54, 68, 655, 942
BsmAI GTCTC 4 cut(s) 71, 122, 480, 840
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 3 cut(s) 20, 197, 913
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 4 cut(s) 201, 339, 544, 648
Bso31I GGTCTC 2 cut(s) 71, 122
Bsp143I GATC 3 cut(s) 241, 827, 913
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 1032
BspANI GGCC 4 cut(s) 201, 339, 544, 648
BspCNI CTCAG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 2 cut(s) 295, 493
BspPI GGATC 2 cut(s) 236, 835
BspTNI GGTCTC 2 cut(s) 71, 122
BsrDI GCAATG 1 cut(s) 1128
BsrFI RCCGGY 3 cut(s) 104, 271, 329
BsrI ACTGG 2 cut(s) 295, 414
BssAI RCCGGY 3 cut(s) 104, 271, 329
BssECI CCNNGG 2 cut(s) 649, 1032
BssMI GATC 3 cut(s) 241, 827, 913
BssNI GRCGYC 3 cut(s) 33, 102, 210
BssT1I CCWWGG 1 cut(s) 1032
Bst2UI CCWGG 2 cut(s) 92, 651
Bst4CI ACNGT 3 cut(s) 465, 491, 682
Bst6I CTCTTC 1 cut(s) 812
BstACI GRCGYC 3 cut(s) 33, 102, 210
BstC8I GCNNGC 2 cut(s) 106, 501
BstDEI CTNAG 3 cut(s) 279, 426, 634
BstDSI CCRYGG 1 cut(s) 1032
BstF5I GGATG 7 cut(s) 222, 523, 670, 715, 731, 1028, 1116
BstKTI GATC 3 cut(s) 244, 830, 916
BstMAI GTCTC 4 cut(s) 71, 122, 480, 840
BstMBI GATC 3 cut(s) 241, 827, 913
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 6 cut(s) 192, 198, 201, 207, 519, 1133
BstNI CCWGG 2 cut(s) 92, 651
BstNSI RCATGY 1 cut(s) 897
BstSCI CCNGG 3 cut(s) 61, 90, 649
BstV1I GCAGC 3 cut(s) 216, 490, 1120
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
Bsu36I CCTNAGG 1 cut(s) 634
BsuRI GGCC 4 cut(s) 201, 339, 544, 648
BtgI CCRYGG 1 cut(s) 1032
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 7 cut(s) 222, 523, 670, 715, 731, 1028, 1116
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 106, 501
CciI TCATGA 1 cut(s) 1003
Cfr10I RCCGGY 3 cut(s) 104, 271, 329
Cfr13I GGNCC 3 cut(s) 88, 199, 647
CseI GACGC 3 cut(s) 22, 110, 199
Csp6I GTAC 2 cut(s) 28, 401
CviAII CATG 7 cut(s) 496, 550, 798, 894, 973, 1004, 1033
CviQI GTAC 2 cut(s) 28, 401
DdeI CTNAG 3 cut(s) 279, 426, 634
DpnI GATC 3 cut(s) 243, 829, 915
DpnII GATC 3 cut(s) 241, 827, 913
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
EciI GGCGGA 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 1032
Eco31I GGTCTC 2 cut(s) 71, 122
Eco47I GGWCC 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 90, 649
EcoT14I CCWWGG 1 cut(s) 1032
ErhI CCWWGG 1 cut(s) 1032
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 7 cut(s) 499, 553, 801, 897, 976, 1007, 1036
FaqI GGGAC 3 cut(s) 20, 197, 913
FatI CATG 7 cut(s) 495, 549, 797, 893, 972, 1003, 1032
FauI CCCGC 2 cut(s) 253, 334
Fnu4HI GCNGC 9 cut(s) 48, 51, 193, 202, 205, 208, 337, 504, 1134
FokI GGATG 7 cut(s) 209, 530, 677, 722, 738, 1015, 1103
Fsp4HI GCNGC 9 cut(s) 48, 51, 193, 202, 205, 208, 337, 504, 1134
FspBI CTAG 2 cut(s) 143, 546
GluI GCNGC 9 cut(s) 48, 51, 193, 202, 205, 208, 337, 504, 1134
GsuI CTGGAG 2 cut(s) 458, 528
HaeIII GGCC 4 cut(s) 201, 339, 544, 648
HapII CCGG 6 cut(s) 62, 86, 105, 183, 272, 330
HgaI GACGC 3 cut(s) 22, 110, 199
Hin1I GRCGYC 3 cut(s) 33, 102, 210
Hin1II CATG 7 cut(s) 499, 553, 801, 897, 976, 1007, 1036
HinfI GANTC 5 cut(s) 155, 946, 1007, 1037, 1150
HpaII CCGG 6 cut(s) 62, 86, 105, 183, 272, 330
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 322, 1056
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 8 cut(s) 127, 563, 783, 1004, 1011, 1120, 1144, 1154
Hpy8I GTNNAC 2 cut(s) 322, 1056
Hpy99I CGWCG 3 cut(s) 104, 113, 176
HpyAV CCTTC 1 cut(s) 1176
HpyCH4III ACNGT 3 cut(s) 465, 491, 682
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 8 cut(s) 366, 448, 729, 773, 893, 989, 1046, 1136
HpyF10VI GCNNNNNNNGC 6 cut(s) 192, 198, 201, 207, 519, 1133
HpyF3I CTNAG 3 cut(s) 279, 426, 634
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 3 cut(s) 33, 102, 210
Hsp92II CATG 7 cut(s) 499, 553, 801, 897, 976, 1007, 1036
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 241, 827, 913
LmnI GCTCC 2 cut(s) 299, 439
Lsp1109I GCAGC 3 cut(s) 216, 490, 1120
LweI GCATC 2 cut(s) 716, 1037
MaeI CTAG 2 cut(s) 143, 546
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 667, 793, 982
MalI GATC 3 cut(s) 243, 829, 915
MboI GATC 3 cut(s) 241, 827, 913
MboII GAAGA 5 cut(s) 107, 398, 829, 1084, 1159
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 913
MluCI AATT 9 cut(s) 149, 236, 298, 377, 443, 555, 596, 620, 741
MmeI TCCRAC 3 cut(s) 436, 889, 956
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 3 cut(s) 527, 960, 1186
MspA1I CMGCKG 4 cut(s) 207, 701, 875, 905
MspI CCGG 6 cut(s) 62, 86, 105, 183, 272, 330
MspR9I CCNGG 3 cut(s) 63, 92, 651
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 945
MvaI CCWGG 2 cut(s) 92, 651
MwoI GCNNNNNNNGC 6 cut(s) 192, 198, 201, 207, 519, 1133
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 63
NcoI CCATGG 1 cut(s) 1032
NdeII GATC 3 cut(s) 241, 827, 913
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 7 cut(s) 499, 553, 801, 897, 976, 1007, 1036
NlaIV GGNNCC 2 cut(s) 295, 493
NmeAIII GCCGAG 1 cut(s) 48
NspI RCATGY 1 cut(s) 897
PagI TCATGA 1 cut(s) 1003
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 108
PctI GAATGC 1 cut(s) 945
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 5 cut(s) 155, 946, 1007, 1037, 1150
PkrI GCNGC 9 cut(s) 49, 52, 194, 203, 206, 209, 338, 505, 1135
Psp6I CCWGG 2 cut(s) 90, 649
PspGI CCWGG 2 cut(s) 90, 649
PspN4I GGNNCC 2 cut(s) 295, 493
PspPI GGNCC 3 cut(s) 88, 199, 647
PsuI RGATCY 1 cut(s) 913
PvuII CAGCTG 2 cut(s) 875, 905
RsaI GTAC 2 cut(s) 29, 402
RsaNI GTAC 2 cut(s) 28, 401
SaqAI TTAA 3 cut(s) 527, 960, 1186
SatI GCNGC 9 cut(s) 48, 51, 193, 202, 205, 208, 337, 504, 1134
Sau3AI GATC 3 cut(s) 241, 827, 913
Sau96I GGNCC 3 cut(s) 88, 199, 647
ScrFI CCNGG 3 cut(s) 63, 92, 651
SfaNI GCATC 2 cut(s) 716, 1037
SgrAI CRCCGGYG 1 cut(s) 104
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
Sse9I AATT 9 cut(s) 149, 236, 298, 377, 443, 555, 596, 620, 741
SspMI CTAG 2 cut(s) 143, 546
StyD4I CCNGG 3 cut(s) 61, 90, 649
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 3 cut(s) 465, 491, 682
TaiI ACGT 1 cut(s) 174
TaqI TCGA 4 cut(s) 126, 153, 240, 564
TasI AATT 9 cut(s) 149, 236, 298, 377, 443, 555, 596, 620, 741
TauI GCSGC 6 cut(s) 50, 53, 195, 204, 210, 339
TfiI GAWTC 5 cut(s) 155, 946, 1007, 1037, 1150
Tru1I TTAA 3 cut(s) 527, 960, 1186
Tru9I TTAA 3 cut(s) 527, 960, 1186
TscAI CASTG 1 cut(s) 295
TseI GCWGC 3 cut(s) 204, 503, 1133
TspDTI ATGAA 6 cut(s) 411, 582, 605, 663, 746, 938
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 897
XcmI CCANNNNNNNNNTGG 2 cut(s) 271, 1063
XspI CTAG 2 cut(s) 143, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.