Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009255

Physical Location & Seq

Genomic Coordinates Reverse (-)

26529717 .. 26530136

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1204700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAGAAGACCGAGACCCAGACTAAACTAGCCCAATTCGATTCCAGCCAAAACCATGTCGTTTTCTCCAGCGGTGGCGGCGAGGGCCGCAGCGGCGTCCCAAACGCCATCCTTATTACCCAATTCGATTCCGTCTCTGTTTCTCTCTCCAATCAACCACTGGCTAAGCTTAACACTGGCTCTGCTTTGCCATATAAAATGATGGTTCACCCCGCCGGTAGCGGCCTCGTTTGCTCTTTCCTTCATAATTGCAAATGGTTTGAATTGGAGGAAGAAAGCGATGAAGTACCTAAACTGGCATTGAGGCAGTCTGAGAGAGTGTTGGAGCAATTGCAAGATGTTGGACAACAGTTAGCTTTGGTGTTTGACAGAGACGGTTCCATGCTTGCTGCTGGAGGCGAGCATAGGATGGCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006888 GO:0008047 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0042175 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098588 GO:0098772 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

140

Amino Acids

15.08

Weight (kDa)

5.27

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01470 AT5G50550 AT5G50650
fragaria_vesca	FvH4_4g32580
malus_domestica	MD08G1204700.v1.1 MD13G1024400.v1.1 MD16G1027100.v1.1
prunus_persica	Prupe.1G326100_v2.0.a1 Prupe.1G326100_v2.0.a1
pyrus_communis	pycom13g02270 pycom16g02290
rosa_chinensis	RchiOBHm_Chr4g0441451
rosa_laevigata	RLG00000006091
rosa_multiflora	Rmu_sc0003360.1_g000007 Rmu_sc0011145.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382320
rosa_rugosa	Rorug04G0333800
rosa_samantha	Rh4AG385300 Rh4BG399500 Rh4CG414500 Rh4DG392100
rosa_wichuraiana	Rw4G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	72, 78, 88, 93, 213, 222
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	2 cut(s)	169, 356
AluI	AGCT	2 cut(s)	169, 356
Alw26I	GTCTC	3 cut(s)	8, 139, 366
AoxI	GGCC	2 cut(s)	85, 223
ApeKI	GCWGC	2 cut(s)	90, 389
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	102, 376
BccI	CCATC	3 cut(s)	116, 196, 403
BcoDI	GTCTC	3 cut(s)	8, 139, 366
BfaI	CTAG	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	6 cut(s)	79, 88, 91, 94, 223, 390
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	6 cut(s)	80, 89, 92, 95, 224, 391
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	2 cut(s)	52, 414
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	3 cut(s)	165, 181, 300
BseGI	GGATG	2 cut(s)	108, 414
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	3 cut(s)	165, 181, 300
BseXI	GCAGC	2 cut(s)	102, 376
BshFI	GGCC	2 cut(s)	87, 225
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	3 cut(s)	8, 139, 366
BsmBI	CGTCTC	2 cut(s)	139, 366
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	87, 225
Bso31I	GGTCTC	1 cut(s)	8
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	6 cut(s)	72, 78, 88, 93, 213, 222
BspANI	GGCC	2 cut(s)	87, 225
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	8
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	3 cut(s)	165, 181, 300
BssAI	RCCGGY	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	351, 377
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	387, 401
BstDEI	CTNAG	2 cut(s)	165, 312
BstF5I	GGATG	2 cut(s)	108, 414
BstMAI	GTCTC	3 cut(s)	8, 139, 366
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 84, 87, 93, 231
BstV1I	GCAGC	2 cut(s)	102, 376
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	87, 225
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	108, 414
BtsIMutI	CAGTG	2 cut(s)	158, 174
Cac8I	GCNNGC	2 cut(s)	387, 401
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	2 cut(s)	56, 382
CviJI	RGCY	8 cut(s)	32, 48, 87, 164, 169, 180, 225, 356
CviKI_1	RGCY	8 cut(s)	32, 48, 87, 164, 169, 180, 225, 356
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	2 cut(s)	165, 312
Eco31I	GGTCTC	1 cut(s)	8
Esp3I	CGTCTC	2 cut(s)	139, 366
FaeI	CATG	2 cut(s)	59, 385
FaiI	YATR	6 cut(s)	57, 193, 195, 246, 383, 405
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	55, 381
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	6 cut(s)	79, 88, 91, 94, 223, 390
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	6 cut(s)	79, 88, 91, 94, 223, 390
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	6 cut(s)	79, 88, 91, 94, 223, 390
GsuI	CTGGAG	2 cut(s)	52, 414
HaeIII	GGCC	2 cut(s)	87, 225
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	59, 385
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	41, 128
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	351, 377
HpyCH4V	TGCA	3 cut(s)	4, 252, 334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 84, 87, 93, 231
HpyF3I	CTNAG	2 cut(s)	165, 312
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	59, 385
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	8 cut(s)	32, 58, 82, 146, 162, 229, 281, 378
Lsp1109I	GCAGC	2 cut(s)	102, 376
MaeI	CTAG	1 cut(s)	29
MboII	GAAGA	2 cut(s)	19, 284
MfeI	CAATTG	1 cut(s)	329
MluCI	AATT	5 cut(s)	35, 122, 247, 263, 329
MmeI	TCCRAC	2 cut(s)	303, 322
MnlI	CCTC	5 cut(s)	76, 236, 262, 297, 389
MseI	TTAA	2 cut(s)	171, 418
MspA1I	CMGCKG	2 cut(s)	72, 93
MspI	CCGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	329
MwoI	GCNNNNNNNGC	5 cut(s)	78, 84, 87, 93, 231
NlaIII	CATG	2 cut(s)	59, 385
NlaIV	GGNNCC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	41, 128
PkrI	GCNGC	6 cut(s)	80, 89, 92, 95, 224, 391
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	171, 418
SatI	GCNGC	6 cut(s)	79, 88, 91, 94, 223, 390
Sau96I	GGNCC	1 cut(s)	85
SetI	ASST	3 cut(s)	171, 292, 358
Sse9I	AATT	5 cut(s)	35, 122, 247, 263, 329
SsiI	CCGC	6 cut(s)	72, 78, 88, 93, 213, 222
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	351, 377
TaqI	TCGA	2 cut(s)	39, 126
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	5 cut(s)	35, 122, 247, 263, 329
TauI	GCSGC	4 cut(s)	81, 90, 96, 225
TfiI	GAWTC	2 cut(s)	41, 128
Tru1I	TTAA	2 cut(s)	171, 418
Tru9I	TTAA	2 cut(s)	171, 418
TscAI	CASTG	2 cut(s)	165, 181
TseI	GCWGC	2 cut(s)	90, 389
TspDTI	ATGAA	2 cut(s)	233, 297
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	165, 181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.