MD16G1027100.v1.1

SEC12-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
1910476 .. 1913586
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1027100.v1.1.491

Sequence Viewer

Length: 1215 bp
ATGGACCTTCCCAACAACTACCACAAGTACGGAGTCCCTTTCTACGCCGCCGCTTGGCTCCCCGGCCTCGGCAAATCCAAACGACCCGACCAGGATCAAGACGACGCCGGCGACGACAAAAAGGAAACCGAGACTCAGACGCAGAAGACTGAGACCCAGACTGAATTAGCCCAATTCGATTCCAACCAAAACCACGTCGTTTTCTCCGGCGGTGGCGGAGAGGGCCGCAGCGGCGTCCCAAACGCCATCGTCGTCGCCCAATTCGATCCCGCCTCCGTTTCTCTCTCCAGCCAGCCGGTGGCTAAGCTCAACACCGGCTCTGCTTTGCCGTATAGAATGGCGGTTCACCCCGCCGGTAGCGGTCTCGTTTGCTCCTTCCCTGATAGTTGCAGGTGGTTTGAGTTGGAGGAAGAAAGCAACGAAGTTCCTAAACTGGCTTTGAGGCAGTCTGAGAGAGTGCTGGAGCAATTGCAAGATGTTGGACAACAGTTAGCCTTGGCTTTCGACAAAGACGGTTCCTTGCTTGCTGCTGGAGGCGAGGATGGCAAGTTAAGGGTTTTCAAGTGGCCTAGCATGGAGATTATTCTCGACGAAGATAAAGCTCATACCACAATGAAGCAATTAGATTTCAGCCCTGATGGGAAATTTCTCGTCTCCTTAGGAGATAGAGGCCCTGGTAGGGTGTGGGATGTAACTTCATCTACCGTTGTAGCTTCTCTACCACCAGAAAAGGATGAAGTCTTTTGCGGTTGCAGATTTTCTGTAACTGATGATGGGGGTCATATTTTATATTTTGCAGATAAATCGGGAAGCATTGTAACATGGAACACGACCACTTGGAAGAGGATTGGATCAAAGACTATTAGTAAAGACATTATTTCCGCCTTTGATGTTTCAGCTGACGGAAAACTCCTTGCATGTGGGACAACTGGTGGAGATCTTGTGATATTAAATCCAACCAGAATGCGGATTCATAAAGTGGTTAAGAAAGCACACATGGGCTTTGTAACTGCATTGAGTTTCTCTCATGATTCAAGAGCTTTGGCTTCGGCATCCCTGGATTCAAGTGCAAGGGTGTCCACACTTGAGGAGGACAAGAAGAAAAATGGAGGAGTGTTGAGCTTATGGGTCATCATACTCATCATTCTGATAGCCATTGCTGCATATTTCCAGATGAATCCTGACAAGTTGCCTTCGGCGTTGAAAGGATTTTAA

Protein Analysis

405

Amino Acids

43.77

Weight (kDa)

5.57

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 113 - 284 6.9e-09 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 130 - 244 6.6e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 147 - 314 1.2e-11 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 165 - 366 1.2e-16 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 165 - 350 2.1e-16 WDHD1 first WD40 domain
WDR55 PF24796 165 - 349 1.9e-08 WDR55
Beta-prop_EML PF23409 196 - 356 2.6e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 227 - 362 2.3e-10 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 229 - 363 4.6e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR19_1st PF23389 257 - 367 2.1e-06 WDR19 first beta-propeller
Beta-prop_THOC3 PF25174 260 - 365 4.4e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 271 - 362 8.3e-07 WDR3 first beta-propeller domain
Beta-prop_Vps41 PF23411 286 - 367 3.8e-06 Vps42 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 381
Acc36I ACCTGC 1 cut(s) 381
AccB7I CCANNNNNTGG 1 cut(s) 298
AclWI GGATC 3 cut(s) 102, 260, 859
AcsI RAATTY 1 cut(s) 644
AcyI GRCGYC 2 cut(s) 105, 234
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 5 cut(s) 54, 68, 298, 679, 966
AgsI TTSAA 4 cut(s) 562, 1035, 1065, 1204
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 3 cut(s) 90, 673, 1056
AluBI AGCT 6 cut(s) 307, 602, 713, 899, 1040, 1122
AluI AGCT 6 cut(s) 307, 602, 713, 899, 1040, 1122
Alw26I GTCTC 4 cut(s) 125, 146, 368, 658
AlwI GGATC 3 cut(s) 102, 260, 859
AoxI GGCC 4 cut(s) 64, 223, 566, 670
ApeKI GCWGC 3 cut(s) 228, 527, 1160
ApoI RAATTY 1 cut(s) 644
AspS9I GGNCC 3 cut(s) 4, 223, 671
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 658
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 240, 514, 1147
BccI CCATC 4 cut(s) 254, 536, 632, 767
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 786, 820
BciT130I CCWGG 3 cut(s) 92, 675, 1058
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 4 cut(s) 125, 146, 368, 658
BfaI CTAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 381
BglI GCCNNNNNGGC 1 cut(s) 231
BglII AGATCT 1 cut(s) 937
BisI GCNGC 7 cut(s) 48, 51, 226, 229, 232, 528, 1161
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 7 cut(s) 49, 52, 227, 230, 233, 529, 1162
Bme1390I CCNGG 4 cut(s) 63, 92, 675, 1058
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 3 cut(s) 4, 223, 671
BmiI GGNNCC 2 cut(s) 59, 517
BmrFI CCNGG 4 cut(s) 63, 92, 675, 1058
BmsI GCATC 1 cut(s) 1061
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 1009, 1041
BpmI CTGGAG 3 cut(s) 271, 482, 552
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 1106
BpuMI CCSGG 1 cut(s) 63
BsaHI GRCGYC 2 cut(s) 105, 234
BsaI GGTCTC 2 cut(s) 146, 368
BsaJI CCNNGG 5 cut(s) 61, 67, 495, 673, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 927, 957
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 68, 298, 679, 966
Bse118I RCCGGY 4 cut(s) 107, 295, 314, 353
Bse1I ACTGG 2 cut(s) 438, 934
Bse21I CCTNAGG 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 1155
BseBI CCWGG 3 cut(s) 92, 675, 1058
BseDI CCNNGG 5 cut(s) 61, 67, 495, 673, 1056
BseGI GGATG 4 cut(s) 547, 694, 739, 1052
BseLI CCNNNNNNNGG 5 cut(s) 54, 68, 298, 679, 966
BseMI GCAATG 1 cut(s) 1155
BseMII CTCAG 3 cut(s) 141, 149, 441
BseNI ACTGG 2 cut(s) 438, 934
BseRI GAGGAG 2 cut(s) 1103, 1125
BseXI GCAGC 3 cut(s) 240, 514, 1147
BshFI GGCC 4 cut(s) 66, 225, 568, 672
BsiSI CCGG 6 cut(s) 63, 108, 207, 296, 315, 354
BslFI GGGAC 3 cut(s) 20, 221, 937
BslI CCNNNNNNNGG 5 cut(s) 54, 68, 298, 679, 966
BsmAI GTCTC 4 cut(s) 125, 146, 368, 658
BsmBI CGTCTC 1 cut(s) 658
BsmFI GGGAC 3 cut(s) 20, 221, 937
BsmI GAATGC 1 cut(s) 969
BsnI GGCC 4 cut(s) 66, 225, 568, 672
Bso31I GGTCTC 2 cut(s) 146, 368
Bsp143I GATC 4 cut(s) 94, 265, 851, 937
Bsp1720I GCTNAGC 1 cut(s) 303
BspANI GGCC 4 cut(s) 66, 225, 568, 672
BspCNI CTCAG 3 cut(s) 142, 148, 442
BspHI TCATGA 1 cut(s) 1027
BspLI GGNNCC 2 cut(s) 59, 517
BspMI ACCTGC 1 cut(s) 381
BspPI GGATC 3 cut(s) 102, 260, 859
BspTNI GGTCTC 2 cut(s) 146, 368
BsrDI GCAATG 1 cut(s) 1155
BsrFI RCCGGY 4 cut(s) 107, 295, 314, 353
BsrI ACTGG 2 cut(s) 438, 934
BssAI RCCGGY 4 cut(s) 107, 295, 314, 353
BssECI CCNNGG 5 cut(s) 61, 67, 495, 673, 1056
BssMI GATC 4 cut(s) 94, 265, 851, 937
BssNI GRCGYC 2 cut(s) 105, 234
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 3 cut(s) 92, 675, 1058
Bst4CI ACNGT 3 cut(s) 489, 515, 706
Bst6I CTCTTC 1 cut(s) 836
BstACI GRCGYC 2 cut(s) 105, 234
BstC8I GCNNGC 3 cut(s) 109, 293, 525
BstDEI CTNAG 5 cut(s) 135, 150, 303, 450, 658
BstF5I GGATG 4 cut(s) 547, 694, 739, 1052
BstKTI GATC 4 cut(s) 97, 268, 854, 940
BstMAI GTCTC 4 cut(s) 125, 146, 368, 658
BstMBI GATC 4 cut(s) 94, 265, 851, 937
BstMWI GCNNNNNNNGC 4 cut(s) 222, 231, 543, 1160
BstNI CCWGG 3 cut(s) 92, 675, 1058
BstNSI RCATGY 1 cut(s) 921
BstSCI CCNGG 4 cut(s) 61, 90, 673, 1056
BstV1I GCAGC 3 cut(s) 240, 514, 1147
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 937
BstYI RGATCY 1 cut(s) 937
Bsu36I CCTNAGG 1 cut(s) 658
BsuRI GGCC 4 cut(s) 66, 225, 568, 672
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 4 cut(s) 547, 694, 739, 1052
BveI ACCTGC 1 cut(s) 381
Cac8I GCNNGC 3 cut(s) 109, 293, 525
CciI TCATGA 1 cut(s) 1027
Cfr10I RCCGGY 4 cut(s) 107, 295, 314, 353
Cfr13I GGNCC 3 cut(s) 4, 223, 671
CseI GACGC 3 cut(s) 113, 148, 223
Csp6I GTAC 1 cut(s) 28
CviAII CATG 5 cut(s) 574, 822, 918, 997, 1028
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 5 cut(s) 135, 150, 303, 450, 658
DpnI GATC 4 cut(s) 96, 267, 853, 939
DpnII GATC 4 cut(s) 94, 265, 851, 937
Eam1104I CTCTTC 1 cut(s) 836
EarI CTCTTC 1 cut(s) 836
EciI GGCGGA 2 cut(s) 231, 871
Eco130I CCWWGG 1 cut(s) 495
Eco31I GGTCTC 2 cut(s) 146, 368
Eco47I GGWCC 1 cut(s) 4
Eco81I CCTNAGG 1 cut(s) 658
EcoO109I RGGNCCY 1 cut(s) 671
EcoRII CCWGG 3 cut(s) 90, 673, 1056
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
Esp3I CGTCTC 1 cut(s) 658
FaeI CATG 5 cut(s) 577, 825, 921, 1000, 1031
FaqI GGGAC 3 cut(s) 20, 221, 937
FatI CATG 5 cut(s) 573, 821, 917, 996, 1027
FauI CCCGC 2 cut(s) 277, 358
Fnu4HI GCNGC 7 cut(s) 48, 51, 226, 229, 232, 528, 1161
FokI GGATG 4 cut(s) 554, 701, 746, 1039
Fsp4HI GCNGC 7 cut(s) 48, 51, 226, 229, 232, 528, 1161
FspBI CTAG 1 cut(s) 570
GluI GCNGC 7 cut(s) 48, 51, 226, 229, 232, 528, 1161
GsuI CTGGAG 3 cut(s) 271, 482, 552
HaeIII GGCC 4 cut(s) 66, 225, 568, 672
HapII CCGG 6 cut(s) 63, 108, 207, 296, 315, 354
HgaI GACGC 3 cut(s) 113, 148, 223
Hin1I GRCGYC 2 cut(s) 105, 234
Hin1II CATG 5 cut(s) 577, 825, 921, 1000, 1031
HinfI GANTC 7 cut(s) 33, 133, 179, 970, 1031, 1061, 1177
HpaII CCGG 6 cut(s) 63, 108, 207, 296, 315, 354
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 346, 1080
Hpy188I TCNGA 3 cut(s) 138, 451, 1149
Hpy188III TCNNGA 7 cut(s) 98, 587, 807, 1028, 1035, 1171, 1181
Hpy8I GTNNAC 2 cut(s) 346, 1080
Hpy99I CGWCG 6 cut(s) 107, 116, 200, 254, 257, 593
HpyAV CCTTC 3 cut(s) 17, 385, 1203
HpyCH4III ACNGT 3 cut(s) 489, 515, 706
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 8 cut(s) 390, 472, 753, 797, 917, 1013, 1070, 1163
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 231, 543, 1160
HpyF3I CTNAG 5 cut(s) 135, 150, 303, 450, 658
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 2 cut(s) 105, 234
Hsp92II CATG 5 cut(s) 577, 825, 921, 1000, 1031
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 4 cut(s) 94, 265, 851, 937
LmnI GCTCC 3 cut(s) 63, 377, 463
Lsp1109I GCAGC 3 cut(s) 240, 514, 1147
LweI GCATC 1 cut(s) 1061
MaeI CTAG 1 cut(s) 570
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 4 cut(s) 691, 763, 817, 1006
MalI GATC 4 cut(s) 96, 267, 853, 939
MboI GATC 4 cut(s) 94, 265, 851, 937
MboII GAAGA 5 cut(s) 157, 422, 605, 853, 1111
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 1 cut(s) 937
MluCI AATT 6 cut(s) 164, 173, 260, 467, 620, 644
MlyI GAGTC 2 cut(s) 42, 127
MmeI TCCRAC 4 cut(s) 207, 384, 460, 980
MreI CGCCGGCG 1 cut(s) 107
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 4 cut(s) 551, 950, 984, 1213
MspA1I CMGCKG 2 cut(s) 231, 899
MspI CCGG 6 cut(s) 63, 108, 207, 296, 315, 354
MspR9I CCNGG 4 cut(s) 63, 92, 675, 1058
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 969
MvaI CCWGG 3 cut(s) 92, 675, 1058
MwoI GCNNNNNNNGC 4 cut(s) 222, 231, 543, 1160
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 1 cut(s) 63
NdeII GATC 4 cut(s) 94, 265, 851, 937
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 5 cut(s) 577, 825, 921, 1000, 1031
NlaIV GGNNCC 2 cut(s) 59, 517
NmeAIII GCCGAG 1 cut(s) 48
NspI RCATGY 1 cut(s) 921
PagI TCATGA 1 cut(s) 1027
PaqCI CACCTGC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 4 cut(s) 108, 111, 249, 261
PctI GAATGC 1 cut(s) 969
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 5 cut(s) 179, 970, 1031, 1061, 1177
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 7 cut(s) 49, 52, 227, 230, 233, 529, 1162
PleI GAGTC 2 cut(s) 41, 127
PpsI GAGTC 2 cut(s) 41, 127
Psp6I CCWGG 3 cut(s) 90, 673, 1056
PspGI CCWGG 3 cut(s) 90, 673, 1056
PspN4I GGNNCC 2 cut(s) 59, 517
PspPI GGNCC 3 cut(s) 4, 223, 671
PsuI RGATCY 1 cut(s) 937
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 4 cut(s) 551, 950, 984, 1213
SatI GCNGC 7 cut(s) 48, 51, 226, 229, 232, 528, 1161
Sau3AI GATC 4 cut(s) 94, 265, 851, 937
Sau96I GGNCC 3 cut(s) 4, 223, 671
SchI GAGTC 2 cut(s) 42, 127
ScrFI CCNGG 4 cut(s) 63, 92, 675, 1058
SetI ASST 9 cut(s) 9, 198, 309, 395, 604, 715, 901, 1042, 1124
SfaNI GCATC 1 cut(s) 1061
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
Sse9I AATT 6 cut(s) 164, 173, 260, 467, 620, 644
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 4 cut(s) 61, 90, 673, 1056
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 3 cut(s) 489, 515, 706
TaiI ACGT 1 cut(s) 198
TaqI TCGA 4 cut(s) 177, 264, 504, 588
TasI AATT 6 cut(s) 164, 173, 260, 467, 620, 644
TauI GCSGC 4 cut(s) 50, 53, 228, 234
TfiI GAWTC 5 cut(s) 179, 970, 1031, 1061, 1177
Tru1I TTAA 4 cut(s) 551, 950, 984, 1213
Tru9I TTAA 4 cut(s) 551, 950, 984, 1213
TseI GCWGC 3 cut(s) 228, 527, 1160
TspDTI ATGAA 5 cut(s) 629, 687, 750, 962, 1190
TspGWI ACGGA 3 cut(s) 45, 265, 918
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 644
XceI RCATGY 1 cut(s) 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.