Prupe.1G326100_v2.0.a1

SEC12-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
31053431 .. 31057119
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G326100.2

Sequence Viewer

Length: 1182 bp
ATGGCAATGGAGCCTCCCAGCAACTACCAGAAGTACGGCGTCCCTTTCTACGTCGCCGCTTGGGCTCCCGACGTCCGTAAGTCCCAACCACGCGACCAAGACGATGACGACGATCATCAAAGCACAGCTCCGACTGAGACTGAATCAGCCCAATCCCATCCCAACCAAAACCACGTCGTTTTGGCCGGCGGTGGTGGCGAGGGTCGCAGCGGGGTCCCAAACGCCATCCTTGTCGCCCAATTCGATCCCGCCTCCGTTTCTCTCTCTCATCAACCCGTGGCTAAGCTGGACACTGGCTCGGATTTGCCTTATAGAATGGCGGTTCACCCCGGTGGTGACGGTCTCATTTGCTCTTTTCCTAATAGTTGCAGATGGTTTGAATGGGACGAAGAAAGCGGTGAGGATCCTAAACTGGGTTTGAAGCAGTCGGACAGAGTGCTCGACCAGTTGGTAGATGTTGGACAACAGTTGGCCTTGGCATTTAACAAAGAAGGTTCCGTTCTTGCTGCTGGAGGCGAGGATGGCAAATTAAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTCTCAATGAAGCTCCAGCTCATACTACAGTGAAGCAATTAGATTTCAGTCCTGATGGGAAATTTCTTGTCTCCTTGGGAAGTCGTGGCCCTGGTAGGGTGTGGGACATAACTTCGTCTACTGTTGCAGCTTCTCTACCACCAGAAAAGGACGAGGTTTTTTGTGCATGCAGATTTTCTTTGATTAGTGATGGGAATTACATTCTATATATTGCAGATAAATCTGGAAGCATTGTGACATGGAACACAACCACTTGGAAGAGGATTGGATCAAAGACTATTGCACGTGACATTATTTGTGCCTTTGATGTTTCAGCTGATGGAAAGCTCCTTGCTTGTGGGACTACTCAAGGAGATCTTGTGATAGTAAATTCAACTAGAATGCAAATTCAAAAAGTGGTTAAGAAAGCACACCTTGGCTTTGTAACTGCATTGAGTTTCTCTCGTGATTCAAGAGCTTTGGCTTCCGCATCCCTGGACTCAAGTGCAAGGGTGTCCACACTTGAGGATGAGAAGAAAACTGGAGGATTGAACATATGGATCATTATATTCATCATTCTAGTCGCCATTGCTGCATATTTCTTGAACAATCCTGAGAAGTTGCCGTCGTTTAATTCTTAA

Protein Analysis

394

Amino Acids

42.53

Weight (kDa)

5.25

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 680
AccII CGCG 1 cut(s) 93
AciI CCGC 7 cut(s) 57, 189, 210, 249, 320, 396, 1029
AclWI GGATC 5 cut(s) 239, 398, 411, 838, 1109
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 3 cut(s) 623, 931, 948
AcvI CACGTG 1 cut(s) 848
AcyI GRCGYC 2 cut(s) 39, 72
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 413, 658
AgsI TTSAA 8 cut(s) 380, 421, 541, 936, 953, 1014, 1093, 1147
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 652, 1035
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 8 cut(s) 128, 286, 575, 581, 692, 878, 889, 1019
AluI AGCT 8 cut(s) 128, 286, 575, 581, 692, 878, 889, 1019
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 3 cut(s) 131, 347, 637
AlwI GGATC 5 cut(s) 239, 398, 411, 838, 1109
AoxI GGCC 4 cut(s) 183, 471, 545, 649
ApeKI GCWGC 4 cut(s) 207, 506, 689, 1133
ApoI RAATTY 3 cut(s) 623, 931, 948
Asp700I GAANNNNTTC 1 cut(s) 561
AspS9I GGNCC 2 cut(s) 214, 650
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 3 cut(s) 317, 347, 410
AvaII GGWCC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 1005
BbrPI CACGTG 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 4 cut(s) 219, 493, 701, 1120
BccI CCATC 7 cut(s) 165, 233, 366, 515, 611, 746, 875
BceAI ACGGC 2 cut(s) 52, 1150
BciT130I CCWGG 2 cut(s) 654, 1037
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 3 cut(s) 131, 347, 637
BfaI CTAG 3 cut(s) 549, 939, 1121
BfmI CTRYAG 1 cut(s) 588
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 916
BisI GCNGC 5 cut(s) 57, 208, 507, 690, 1134
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 5 cut(s) 58, 209, 508, 691, 1135
Bme1390I CCNGG 3 cut(s) 330, 654, 1037
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 214, 650
BmiI GGNNCC 6 cut(s) 12, 66, 215, 216, 405, 496
BmrFI CCNGG 3 cut(s) 330, 654, 1037
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 1040
BmuI ACTGGG 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
BpmI CTGGAG 3 cut(s) 531, 561, 1104
Bpu1102I GCTNAGC 1 cut(s) 282
BpuEI CTTGAG 3 cut(s) 894, 1027, 1085
BpuMI CCSGG 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 848
BsaHI GRCGYC 2 cut(s) 39, 72
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 7 cut(s) 276, 328, 474, 636, 652, 976, 1035
BsaXI ACNNNNNCTCC 2 cut(s) 906, 936
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 658
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 4 cut(s) 298, 417, 445, 1087
Bse3DI GCAATG 2 cut(s) 12, 1128
BseBI CCWGG 2 cut(s) 654, 1037
BseDI CCNNGG 7 cut(s) 276, 328, 474, 636, 652, 976, 1035
BseGI GGATG 5 cut(s) 157, 225, 526, 1031, 1075
BseLI CCNNNNNNNGG 2 cut(s) 413, 658
BseMI GCAATG 2 cut(s) 12, 1128
BseMII CTCAG 2 cut(s) 126, 1146
BseNI ACTGG 4 cut(s) 298, 417, 445, 1087
BseXI GCAGC 4 cut(s) 219, 493, 701, 1120
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 4 cut(s) 185, 473, 547, 651
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 2 cut(s) 186, 330
BslFI GGGAC 6 cut(s) 26, 67, 200, 398, 680, 916
BslI CCNNNNNNNGG 2 cut(s) 413, 658
BsmAI GTCTC 3 cut(s) 131, 347, 637
BsmFI GGGAC 6 cut(s) 26, 67, 200, 398, 680, 916
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 4 cut(s) 185, 473, 547, 651
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 67, 441
Bsp143I GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 7 cut(s) 57, 189, 210, 249, 320, 396, 1029
BspANI GGCC 4 cut(s) 185, 473, 547, 651
BspCNI CTCAG 2 cut(s) 127, 1147
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 6 cut(s) 12, 66, 215, 216, 405, 496
BspPI GGATC 5 cut(s) 239, 398, 411, 838, 1109
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 12, 1128
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 4 cut(s) 298, 417, 445, 1087
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 7 cut(s) 276, 328, 474, 636, 652, 976, 1035
BssMI GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
BssNI GRCGYC 2 cut(s) 39, 72
BssSI CACGAG 1 cut(s) 1005
BssT1I CCWWGG 3 cut(s) 474, 636, 976
Bst2BI CACGAG 1 cut(s) 1005
Bst2UI CCWGG 2 cut(s) 654, 1037
Bst4CI ACNGT 4 cut(s) 341, 468, 592, 685
Bst6I CTCTTC 1 cut(s) 815
BstACI GRCGYC 2 cut(s) 39, 72
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 2 cut(s) 187, 730
BstDEI CTNAG 3 cut(s) 135, 282, 1155
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 5 cut(s) 157, 225, 526, 1031, 1075
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 6 cut(s) 115, 247, 406, 833, 919, 1104
BstMAI GTCTC 3 cut(s) 131, 347, 637
BstMBI GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
BstMWI GCNNNNNNNGC 5 cut(s) 62, 195, 204, 522, 1133
BstNI CCWGG 2 cut(s) 654, 1037
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 3 cut(s) 328, 652, 1035
BstSFI CTRYAG 1 cut(s) 588
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 219, 493, 701, 1120
BstX2I RGATCY 2 cut(s) 403, 916
BstYI RGATCY 2 cut(s) 403, 916
BsuRI GGCC 4 cut(s) 185, 473, 547, 651
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 5 cut(s) 157, 225, 526, 1031, 1075
BtsIMutI CAGTG 2 cut(s) 291, 597
Cac8I GCNNGC 2 cut(s) 187, 730
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 214, 650
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 553, 729, 801
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 3 cut(s) 135, 282, 1155
DpnI GATC 6 cut(s) 114, 246, 405, 832, 918, 1103
DpnII GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 815
EarI CTCTTC 1 cut(s) 815
Eco130I CCWWGG 3 cut(s) 474, 636, 976
Eco24I GRGCYC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 214
Eco72I CACGTG 1 cut(s) 848
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 652, 1035
EcoT14I CCWWGG 3 cut(s) 474, 636, 976
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 3 cut(s) 474, 636, 976
FaeI CATG 3 cut(s) 556, 732, 804
FalI AAGNNNNNCTT 4 cut(s) 903, 935, 960, 992
FaqI GGGAC 6 cut(s) 26, 67, 200, 398, 680, 916
FatI CATG 3 cut(s) 552, 728, 800
FauI CCCGC 2 cut(s) 203, 256
FauNDI CATATG 1 cut(s) 1097
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 5 cut(s) 57, 208, 507, 690, 1134
FokI GGATG 5 cut(s) 144, 212, 533, 1018, 1082
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 5 cut(s) 57, 208, 507, 690, 1134
FspBI CTAG 3 cut(s) 549, 939, 1121
GluI GCNGC 5 cut(s) 57, 208, 507, 690, 1134
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 3 cut(s) 531, 561, 1104
HaeIII GGCC 4 cut(s) 185, 473, 547, 651
HapII CCGG 2 cut(s) 186, 330
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 2 cut(s) 39, 72
Hin1II CATG 3 cut(s) 556, 732, 804
HinfI GANTC 3 cut(s) 143, 1010, 1040
HpaII CCGG 2 cut(s) 186, 330
HphI GGTGA 3 cut(s) 317, 347, 410
Hpy166II GTNNAC 3 cut(s) 325, 681, 1059
Hpy188I TCNGA 3 cut(s) 132, 301, 430
Hpy188III TCNNGA 7 cut(s) 68, 614, 786, 1007, 1014, 1144, 1154
Hpy8I GTNNAC 3 cut(s) 325, 681, 1059
Hpy99I CGWCG 5 cut(s) 56, 74, 113, 179, 1171
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 4 cut(s) 341, 468, 592, 685
HpyCH4IV ACGT 4 cut(s) 51, 72, 174, 847
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 195, 204, 522, 1133
HpyF3I CTNAG 3 cut(s) 135, 282, 1155
HpySE526I ACGT 4 cut(s) 51, 72, 174, 847
Hsp92I GRCGYC 2 cut(s) 39, 72
Hsp92II CATG 3 cut(s) 556, 732, 804
KflI GGGWCCC 1 cut(s) 214
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
LmnI GCTCC 5 cut(s) 10, 70, 133, 580, 894
Lsp1109I GCAGC 4 cut(s) 219, 493, 701, 1120
LweI GCATC 1 cut(s) 1040
MaeI CTAG 3 cut(s) 549, 939, 1121
MaeII ACGT 4 cut(s) 51, 72, 174, 847
MaeIII GTNAC 4 cut(s) 335, 796, 848, 985
MalI GATC 6 cut(s) 114, 246, 405, 832, 918, 1103
MboI GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
MboII GAAGA 3 cut(s) 401, 832, 1087
MflI RGATCY 2 cut(s) 403, 916
MhlI GDGCHC 2 cut(s) 67, 441
MluCI AATT 9 cut(s) 239, 527, 558, 599, 623, 757, 931, 948, 1174
MlyI GAGTC 1 cut(s) 1034
MmeI TCCRAC 3 cut(s) 155, 408, 439
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 5 cut(s) 483, 530, 963, 1173, 1180
MslI CAYNNNNRTG 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 210, 878
MspI CCGG 2 cut(s) 186, 330
MspR9I CCNGG 3 cut(s) 330, 654, 1037
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 2 cut(s) 654, 1037
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 5 cut(s) 62, 195, 204, 522, 1133
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 1097
NdeII GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 3 cut(s) 556, 732, 804
NlaIV GGNNCC 6 cut(s) 12, 66, 215, 216, 405, 496
NmuCI GTSAC 3 cut(s) 335, 796, 848
NspI RCATGY 1 cut(s) 732
OliI CACNNNNGTG 1 cut(s) 330
PaeI GCATGC 1 cut(s) 732
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 240
PctI GAATGC 1 cut(s) 948
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 143, 1010
PkrI GCNGC 5 cut(s) 58, 209, 508, 691, 1135
PleI GAGTC 1 cut(s) 1034
PmaCI CACGTG 1 cut(s) 848
PmlI CACGTG 1 cut(s) 848
PpsI GAGTC 1 cut(s) 1034
Ppu21I YACGTR 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 652, 1035
PspCI CACGTG 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 2 cut(s) 652, 1035
PspN4I GGNNCC 6 cut(s) 12, 66, 215, 216, 405, 496
PspPI GGNCC 2 cut(s) 214, 650
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 2 cut(s) 403, 916
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 5 cut(s) 483, 530, 963, 1173, 1180
SatI GCNGC 5 cut(s) 57, 208, 507, 690, 1134
Sau3AI GATC 6 cut(s) 112, 244, 403, 830, 916, 1101
Sau96I GGNCC 2 cut(s) 214, 650
SchI GAGTC 1 cut(s) 1034
ScrFI CCNGG 3 cut(s) 330, 654, 1037
SduI GDGCHC 2 cut(s) 67, 441
SfaNI GCATC 1 cut(s) 1040
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 3 cut(s) 909, 1042, 1064
SmoI CTYRAG 3 cut(s) 909, 1042, 1064
SphI GCATGC 1 cut(s) 732
Sse9I AATT 9 cut(s) 239, 527, 558, 599, 623, 757, 931, 948, 1174
SsiI CCGC 7 cut(s) 57, 189, 210, 249, 320, 396, 1029
SspMI CTAG 3 cut(s) 549, 939, 1121
StyD4I CCNGG 3 cut(s) 328, 652, 1035
StyI CCWWGG 3 cut(s) 474, 636, 976
TaaI ACNGT 4 cut(s) 341, 468, 592, 685
TaiI ACGT 4 cut(s) 54, 75, 177, 850
TaqI TCGA 2 cut(s) 243, 441
TasI AATT 9 cut(s) 239, 527, 558, 599, 623, 757, 931, 948, 1174
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 2 cut(s) 143, 1010
Tru1I TTAA 5 cut(s) 483, 530, 963, 1173, 1180
Tru9I TTAA 5 cut(s) 483, 530, 963, 1173, 1180
TscAI CASTG 2 cut(s) 298, 597
TseFI GTSAC 3 cut(s) 335, 796, 848
TseI GCWGC 4 cut(s) 207, 506, 689, 1133
Tsp45I GTSAC 3 cut(s) 335, 796, 848
TspDTI ATGAA 2 cut(s) 585, 1102
TspGWI ACGGA 3 cut(s) 65, 244, 487
TspRI CASTG 2 cut(s) 298, 597
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 3 cut(s) 623, 931, 948
XceI RCATGY 1 cut(s) 732
XmiI GTMKAC 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 3 cut(s) 549, 939, 1121
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.