Rw4G033280

SEC12-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
60363342 .. 60366945
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033280.1

Sequence Viewer

Length: 927 bp
ATGGAAGCAGAAGCTCTGAATCACATAAAGTACGGCATCCCTTTCTACGGCATCGGTTGGGTTCCCGACGGCATCCCTCTCACCTCCTCGGAACGACCGGAGCAGGAGAACAGCGATCAGAAAACCGAGACTCGGACCGAGTCGACTCAGTCGGTTCCCGATTCGAACCATATAGTATTGGCCGGCGGTGGCGGCGAGGGCAACAGCGGCGTCAAAAACGCCGTCGTTCTCATCCAGTTCGATCCCGCCTCGACTTCTATCTCCCATGAGCCGGTGGCTAAGCTCGGGTTAGGCTCTGATTTGCCTTACAGAATGGCGGTTCATCCCGGTGCTGACGGTCTGATTTGTTCGTTTCCTGAAAGCTGCAGTTGGTTTGAATGGGAGAAGGAATTGAGGGAGGGAGCTCATAAGCTAAGTGTGAAGCAATCTGATAGAGTACTTAAACAATTGCAAGATGTAGGGCAACAGTTAGCGCTGGCATTTAACAAAGAAGGTTCGGTGCTTGCTACCGGAGGCGAGGATGGCAATTTAAGGGTTTTCAAGTGGCCCAGCATGGAAATTATGTTCACTGAAGCTCAAGCTCATAGAACAGTCAAGCAGTTAGATTTCAGCCATGACGGGAAATTTCTTGTCTCCTTGGGACAAAGTGGCCCTGGTAGAGTCTGGGATGTGACTTCAGCTGCAGTTGTAGCTACTTTACCAACGGAAAAGGATGAGGTATTTTGTGCATGCAAATTTTCTCTAGTGAACAATGGGATTGAAGTTCTACATCTTGCAGATAAAGATGGAATCATTGTAACATGGAACACAACCACATGGAGGAGGGTTCGATCCAAGCGAATTACTCGAGATGGCATCACCGCCTTTGATGTTTCGGCTGATGGAAAGCTCCTTGCATGGTCTGTTCATCTTGGATGCTTCTATTAA

Protein Analysis

308

Amino Acids

33.69

Weight (kDa)

5.51

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 146 - 299 2e-14 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 146 - 298 5.4e-09 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 147 - 301 1.2e-13 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 155 - 229 1.8e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 157 - 299 2.5e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 158 - 300 7.8e-13 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 158 - 301 5.1e-10 WDHD1 first WD40 domain
WDR55 PF24796 158 - 305 4.3e-07 WDR55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AciI CCGC 6 cut(s) 186, 192, 207, 246, 317, 861
AclWI GGATC 2 cut(s) 236, 825
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 2 cut(s) 623, 734
AcuI CTGAAG 2 cut(s) 591, 660
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 2 cut(s) 32, 438
AfeI AGCGCT 1 cut(s) 474
AfiI CCNNNNNNNGG 4 cut(s) 47, 132, 271, 819
AgsI TTSAA 3 cut(s) 377, 541, 761
AjnI CCWGG 1 cut(s) 652
AloI GAACNNNNNNTCC 2 cut(s) 548, 580
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 122, 637
AlwI GGATC 2 cut(s) 236, 825
Ama87I CYCGRG 2 cut(s) 284, 846
Aor51HI AGCGCT 1 cut(s) 474
AoxI GGCC 3 cut(s) 180, 545, 649
ApeKI GCWGC 2 cut(s) 363, 680
ApoI RAATTY 2 cut(s) 623, 734
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 135, 546, 650
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 2 cut(s) 73, 850
AsuII TTCGAA 1 cut(s) 164
AvaI CYCGRG 2 cut(s) 284, 846
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 350, 667
BccI CCATC 4 cut(s) 515, 779, 845, 875
BceAI ACGGC 4 cut(s) 49, 64, 85, 206
BciT130I CCWGG 1 cut(s) 654
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 122, 637
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 2 cut(s) 364, 681
BfoI RGCGCY 1 cut(s) 476
BisI GCNGC 4 cut(s) 193, 208, 364, 681
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 4 cut(s) 194, 209, 365, 682
BmcAI AGTACT 1 cut(s) 438
Bme1390I CCNGG 2 cut(s) 327, 654
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 2 cut(s) 284, 846
BmgT120I GGNCC 3 cut(s) 135, 546, 650
BmiI GGNNCC 2 cut(s) 63, 156
BmrFI CCNGG 2 cut(s) 327, 654
BmsI GCATC 5 cut(s) 45, 60, 81, 864, 905
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 87, 636, 652
BsaWI WCCGGW 2 cut(s) 97, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 132, 271, 819
Bse118I RCCGGY 2 cut(s) 182, 271
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 87, 636, 652
BseGI GGATG 8 cut(s) 36, 72, 231, 322, 526, 673, 718, 920
BseLI CCNNNNNNNGG 4 cut(s) 47, 132, 271, 819
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 76, 835
BseXI GCAGC 2 cut(s) 350, 667
BseYI CCCAGC 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 182, 547, 651
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 2 cut(s) 284, 846
BsiSI CCGG 5 cut(s) 98, 183, 272, 327, 510
BslFI GGGAC 1 cut(s) 654
BslI CCNNNNNNNGG 4 cut(s) 47, 132, 271, 819
BsmAI GTCTC 2 cut(s) 122, 637
BsmFI GGGAC 1 cut(s) 654
BsnI GGCC 3 cut(s) 182, 547, 651
BsoBI CYCGRG 2 cut(s) 284, 846
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 3 cut(s) 115, 241, 830
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 6 cut(s) 186, 192, 207, 246, 317, 861
BspANI GGCC 3 cut(s) 182, 547, 651
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 63, 156
BspMAI CTGCAG 2 cut(s) 368, 685
BspPI GGATC 2 cut(s) 236, 825
BspT104I TTCGAA 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 182, 271
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 2 cut(s) 182, 271
BssECI CCNNGG 3 cut(s) 87, 636, 652
BssMI GATC 3 cut(s) 115, 241, 830
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 338, 468, 592
BstACI GRCGYC 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 4 cut(s) 184, 477, 504, 730
BstDEI CTNAG 3 cut(s) 147, 279, 413
BstF5I GGATG 8 cut(s) 36, 72, 231, 322, 526, 673, 718, 920
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 3 cut(s) 118, 244, 833
BstMAI GTCTC 2 cut(s) 122, 637
BstMBI GATC 3 cut(s) 115, 241, 830
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 5 cut(s) 192, 198, 207, 522, 689
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 325, 652
BstSFI CTRYAG 2 cut(s) 364, 681
BstV1I GCAGC 2 cut(s) 350, 667
BsuRI GGCC 3 cut(s) 182, 547, 651
BtsCI GGATG 8 cut(s) 36, 72, 231, 322, 526, 673, 718, 920
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 4 cut(s) 184, 477, 504, 730
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 2 cut(s) 182, 271
Cfr13I GGNCC 3 cut(s) 135, 546, 650
CpoI CGGWCCG 1 cut(s) 135
CseI GACGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 31, 437
CspI CGGWCCG 1 cut(s) 135
CviAII CATG 7 cut(s) 266, 553, 614, 729, 801, 816, 897
CviQI GTAC 2 cut(s) 31, 437
DdeI CTNAG 3 cut(s) 147, 279, 413
DpnI GATC 3 cut(s) 117, 243, 832
DpnII GATC 3 cut(s) 115, 241, 830
EaeI YGGCCR 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 591, 660
Eco88I CYCGRG 2 cut(s) 284, 846
EcoICRI GAGCTC 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 7 cut(s) 269, 556, 617, 732, 804, 819, 900
FaqI GGGAC 1 cut(s) 654
FatI CATG 7 cut(s) 265, 552, 613, 728, 800, 815, 896
FauI CCCGC 1 cut(s) 253
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 193, 208, 364, 681
FokI GGATG 7 cut(s) 23, 59, 218, 309, 533, 680, 725
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 4 cut(s) 193, 208, 364, 681
FspBI CTAG 1 cut(s) 743
GlaI GCGC 1 cut(s) 474
GluI GCNGC 4 cut(s) 193, 208, 364, 681
GsaI CCCAGC 1 cut(s) 552
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 3 cut(s) 182, 547, 651
HapII CCGG 5 cut(s) 98, 183, 272, 327, 510
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 7 cut(s) 269, 556, 617, 732, 804, 819, 900
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 7 cut(s) 19, 130, 140, 145, 161, 660, 789
HpaII CCGG 5 cut(s) 98, 183, 272, 327, 510
HphI GGTGA 2 cut(s) 73, 850
Hpy166II GTNNAC 3 cut(s) 144, 567, 748
Hpy188I TCNGA 7 cut(s) 18, 91, 120, 135, 298, 342, 430
Hpy188III TCNNGA 4 cut(s) 65, 158, 356, 848
Hpy8I GTNNAC 3 cut(s) 144, 567, 748
Hpy99I CGWCG 2 cut(s) 71, 227
HpyAV CCTTC 2 cut(s) 379, 485
HpyCH4III ACNGT 3 cut(s) 338, 468, 592
HpyCH4V TGCA 7 cut(s) 366, 451, 683, 728, 732, 776, 896
HpyF10VI GCNNNNNNNGC 5 cut(s) 192, 198, 207, 522, 689
HpyF3I CTNAG 3 cut(s) 147, 279, 413
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 7 cut(s) 269, 556, 617, 732, 804, 819, 900
HspAI GCGC 1 cut(s) 473
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 115, 241, 830
LmnI GCTCC 3 cut(s) 100, 401, 894
Lsp1109I GCAGC 2 cut(s) 350, 667
LweI GCATC 5 cut(s) 45, 60, 81, 864, 905
MaeI CTAG 1 cut(s) 743
MaeIII GTNAC 2 cut(s) 670, 796
MalI GATC 3 cut(s) 117, 243, 832
MboI GATC 3 cut(s) 115, 241, 830
MfeI CAATTG 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 7 cut(s) 389, 446, 526, 558, 623, 734, 840
MlyI GAGTC 4 cut(s) 124, 139, 149, 669
MroNI GCCGGC 1 cut(s) 182
MseI TTAA 4 cut(s) 441, 483, 530, 925
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 2 cut(s) 207, 680
MspI CCGG 5 cut(s) 98, 183, 272, 327, 510
MspR9I CCNGG 2 cut(s) 327, 654
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 192, 198, 207, 522, 689
NaeI GCCGGC 1 cut(s) 184
NciI CCSGG 1 cut(s) 327
NdeII GATC 3 cut(s) 115, 241, 830
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 7 cut(s) 269, 556, 617, 732, 804, 819, 900
NlaIV GGNNCC 2 cut(s) 63, 156
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 1 cut(s) 732
NspV TTCGAA 1 cut(s) 164
PaeI GCATGC 1 cut(s) 732
PaeR7I CTCGAG 1 cut(s) 846
PcsI WCGNNNNNNNCGW 1 cut(s) 835
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 3 cut(s) 19, 161, 789
PflFI GACNNNGTC 2 cut(s) 139, 148
PkrI GCNGC 4 cut(s) 194, 209, 365, 682
PleI GAGTC 4 cut(s) 124, 139, 148, 668
PpsI GAGTC 4 cut(s) 124, 139, 148, 668
Psp124BI GAGCTC 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 2 cut(s) 63, 156
PspPI GGNCC 3 cut(s) 135, 546, 650
PstI CTGCAG 2 cut(s) 368, 685
PsyI GACNNNGTC 2 cut(s) 139, 148
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 32, 438
RsaNI GTAC 2 cut(s) 31, 437
RseI CAYNNNNRTG 1 cut(s) 327
Rsr2I CGGWCCG 1 cut(s) 135
RsrII CGGWCCG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 406
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 4 cut(s) 441, 483, 530, 925
SatI GCNGC 4 cut(s) 193, 208, 364, 681
Sau3AI GATC 3 cut(s) 115, 241, 830
Sau96I GGNCC 3 cut(s) 135, 546, 650
ScaI AGTACT 1 cut(s) 438
SchI GAGTC 4 cut(s) 124, 139, 149, 669
ScrFI CCNGG 2 cut(s) 327, 654
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 5 cut(s) 45, 60, 81, 864, 905
SfcI CTRYAG 2 cut(s) 364, 681
Sfr274I CTCGAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 846
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 576, 846
SmoI CTYRAG 2 cut(s) 576, 846
SphI GCATGC 1 cut(s) 732
Sse9I AATT 7 cut(s) 389, 446, 526, 558, 623, 734, 840
SsiI CCGC 6 cut(s) 186, 192, 207, 246, 317, 861
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 325, 652
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 3 cut(s) 338, 468, 592
TaqI TCGA 6 cut(s) 143, 164, 240, 251, 829, 847
TaqII GACCGA 1 cut(s) 152
TasI AATT 7 cut(s) 389, 446, 526, 558, 623, 734, 840
TatI WGTACW 1 cut(s) 436
TauI GCSGC 2 cut(s) 195, 210
TfiI GAWTC 3 cut(s) 19, 161, 789
Tru1I TTAA 4 cut(s) 441, 483, 530, 925
Tru9I TTAA 4 cut(s) 441, 483, 530, 925
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 2 cut(s) 363, 680
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 2 cut(s) 311, 896
TspGWI ACGGA 1 cut(s) 719
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 2 cut(s) 139, 148
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 2 cut(s) 623, 734
XceI RCATGY 1 cut(s) 732
XhoI CTCGAG 1 cut(s) 846
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 1 cut(s) 743
ZrmI AGTACT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.